List of publications
2012
Tseng YY, Hunt SM, Heintzen C, Crosthwaite SK, Schwartz JM (2012). Comprehensive modelling of the Neurospora circadian clock and its temperature compensation. PLoS Computational Biology 8: e1002437.
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Nacher JC, Schwartz JM (2012). Modularity in protein complex and drug interactions reveals new polypharmacological properties. PLoS ONE 7: e30028.
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2011
Schwartz JM, Gaugain C (2011). Genome-scale integrative data analysis and modeling of dynamic processes in yeast. Methods in Molecular Biology 759: 427-43.
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2010
Chen DW, Lynch JT, Demonacos C, Krstic-Demonacos M, Schwartz JM (2010). Quantitative analysis and modeling of glucocorticoid-controlled gene expression. Pharmacogenomics 11: 1545-60.
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Radrich K, Tsuruoka Y, Dobson P, Gevorgyan A, Swainston N, Baart G, Schwartz JM (2010). Integration of metabolic databases for the reconstruction of genome-scale metabolic networks. BMC Systems Biology 4: 114.
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Kritz MV, Trindade dos Santos M, Urrutia S, Schwartz JM (2010). Organising metabolic networks: cycles in flux distributions. Journal of Theoretical Biology 265: 250-60.
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Adiamah DA, Handl J, Schwartz JM (2010). Streamlining the construction of large-scale dynamic models using generic kinetic equations. Bioinformatics 26: 1324-31.
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2009
Williamson T, Schwartz JM, Kell DB, Stateva L (2009). Deterministic mathematical models of the cAMP pathway in Saccharomyces cerevisiae. BMC Systems Biology 3: 70.
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Schwartz JM, Nacher JC (2009). Local and global modes of drug action in biochemical networks. BMC Chemical Biology 9: 4.
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2008
Nacher JC, Schwartz JM (2008). A global view of drug-therapy interactions. BMC Pharmacology 8: 5.
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2007
Schwartz JM, Gaugain C, Nacher JC, de Daruvar A, Kanehisa M (2007). Observing metabolic functions at the genome scale. Genome Biology 8: R123.
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2006
Nacher JC, Schwartz JM, Kanehisa M, Akutsu T (2006). Identification of metabolic units induced by environmental signals. Bioinformatics 22: e375-83.
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Schwartz JM, Kanehisa M (2006). Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis. BMC Bioinformatics 7: 186.
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2005
Schwartz JM, Kanehisa M (2005). A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes. Bioinformatics 21: ii204-5.
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Schwartz JM, Denninger M, Rancourt D, Moisan C, Laurendeau D (2005). Modelling liver tissue properties using a non-linear visco-elastic model for surgery simulation. Medical Image Analysis 9: 103-12.
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2004
Schwartz JM, Laurendeau D, Denninger M, Rancourt D (2004). Geometrically and physically non-linear models for soft tissue simulation. Proceedings of the 6th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering (CMBBE 2004): 48C.
2003
Branzan Albu A, Schwartz JM, Laurendeau D, Moisan C (2003). Integrating geometric and biomechanical models of a liver tumour for cryosurgery simulation. Lecture Notes in Computer Science 2673: 121-31.
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2002
Schwartz JM, Denninger M, Rancourt D, Moisan C, Laurendeau D (2002). Modelling liver tissue properties using a non-linear viscoelastic model for surgery simulation. ESAIM Proceedings 12: 146-53.
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2001
Schwartz JM, Langelier È, Moisan C, Laurendeau D (2001). Non-linear soft tissue deformations for the simulation of percutaneous surgeries. Lecture Notes in Computer Science 2208: 1271-2.
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2000
Schneider N, Schwartz JM, Köhler J, Becker M, Schwarz H, Gerisch G (2000). Golvesin-GFP fusions as distinct markers for Golgi and post-Golgi vesicles in Dictyostelium cells. Biology of the Cell 92: 495-511.
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1999
Koonce MP, Köhler J, Neujahr R, Schwartz JM, Tikhonenko I, Gerisch G (1999). Dynein motor regulation stabilizes interphase microtubule arrays and determines centrosome position. EMBO Journal 18: 6786-92.
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Gabriel D, Hacker U, Köhler J, Müller-Taubenberger A, Schwartz JM, Westphal M, Gerisch G (1999). The contractile vacuole network of Dictyostelium as a distinct organelle: its dynamics visualized by a GFP marker protein. Journal of Cell Science 112: 3995-4005.
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Weber I, Gerisch G, Heizer C, Murphy J, Badelt K, Stock A, Schwartz JM, Faix J (1999). Cytokinesis mediated through the recruitment of cortexillins into the cleavage furrow. EMBO Journal 18: 586-94.
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1998
Peracino B, Borleis J, Jin T, Westphal M, Schwartz JM, Wu L, Bracco E, Gerisch G, Devreotes P, Bozzaro S (1998). G protein beta subunit-null mutants are impaired in phagocytosis and chemotaxis due to inappropriate regulation of the actin cytoskeleton. Journal of Cell Biology 141: 1529-37.
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Neujahr R, Albrecht R, Köhler J, Matzner M, Schwartz JM, Westphal M, Gerisch G (1998). Microtubule-mediated centrosome motility and the positioning of cleavage furrows in multinucleate myosin II-null cells. Journal of Cell Science 111: 1227-40.
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1997
Neujahr R, Heizer C, Albrecht R, Ecke M, Schwartz JM, Weber I, Gerisch G (1997). Three-dimensional patterns and redistribution of myosin II and actin in mitotic Dictyostelium cells. Journal of Cell Biology 139: 1793-804.
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Westphal M, Jungbluth A, Heidecker M, Mühlbauer B, Heizer C, Schwartz JM, Marriott G, Gerisch G (1997). Microfilament dynamics during cell movement and chemotaxis monitored using a GFP-actin fusion protein. Current Biology 7: 176-83.
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