Interaction networks and node/edge groups are specified in a text file using a simple tab-delimited format:
node1 groupA
node2 groupA
node3 groupB
...
//
node1 node2 groupA 0
node2 node3 groupC 2
node3 node1 groupD 1
...
//
The first section of the file specifies
- the node IDs (column 1)
- (optionally) the IDs of the groups to which they belong (column 2).
This section is terminated with "//".
The second section describes
- interactions between pairs of nodes (columns 1 and 2)
- (optionally) the groups to which these interactions belong (column 3)
- (optionally) whether each interaction is undirected (0), directed (1) or bidirectional (2) (column 4).
This section is also terminated with "//".
instructions
help on data formats
example data files
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