Control file for simulate (1)

######################## The Evolutionary Model Section ############
{MODEL}
#the name of your model
Model = MIXED

#since we are using the mixed model we provide the number of models
Number of models = 2

{MODEL1}
    #DNA model : REV + dg3
    Model = REV
    Discrete gamma distribution of rates = yes
    Number of gamma categories  = 3
{\MODEL1}
{MODEL2}
    #RNA model : RNA7A + dg4 + I
    Model = RNA7A
    Discrete gamma distribution of rates = yes
    Number of gamma categories  = 4
    Invariant sites             = yes
{\MODEL2}
{\MODEL}

######################## The Simulate Section ############

#to produce an example of '.model' file for the specified model set this field
#to 'yes'
Retrieve the name of the model's parameters = yes

#the following field is the name of the '.model' file to create
Model parameters file = data/simulate.model