Supplemental results for BASEML

seqf:  brown.nuc
treef: brown.trees


TREE #  1

Ancestral reconstruction by BASEML.

(((Human: 0.041755, Chimpanzee: 0.053312): 0.016472, Gorilla: 0.058177): 0.052919, Orangutan: 0.100079, Gibbon: 0.139397);

(((1, 2), 3), 4, 5);

   6..7     7..8     8..1     8..2     7..3     6..4     6..5  

tree with node labels for Rod Page's TreeView
(((1_Human, 2_Chimpanzee) 8 , 3_Gorilla) 7 , 4_Orangutan, 5_Gibbon) 6 ;

Nodes 6 to 8 are ancestral
Constant sites not listed for verbose=0

(1) Marginal reconstruction of ancestral sequences
(eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650).

Prob of best state at each node, listed by site

   site   Freq   Data: 

   1    202   AAAAA: A(1.000) A(1.000) A(1.000) 
   2    202   AAAAA: A(1.000) A(1.000) A(1.000) 
   3     71   GGGGG: G(1.000) G(1.000) G(1.000) 
   4    184   CCCCC: C(0.999) C(1.000) C(1.000) 
   5    156   TTTTT: T(0.999) T(1.000) T(1.000) 
   6    156   TTTTT: T(0.999) T(1.000) T(1.000) 
   7     24   CCCCT: C(0.958) C(0.999) C(1.000) 
   8    202   AAAAA: A(1.000) A(1.000) A(1.000) 
   9    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  10      5   CCCCA: C(0.989) C(1.000) C(1.000) 
  11     71   GGGGG: G(1.000) G(1.000) G(1.000) 
  12     71   GGGGG: G(1.000) G(1.000) G(1.000) 
  13     24   CCCCT: C(0.958) C(0.999) C(1.000) 
  14     71   GGGGG: G(1.000) G(1.000) G(1.000) 
  15    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  16    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  17      2   GAGAA: A(0.828) G(0.800) G(0.800) 
  18     12   TTTCC: C(0.777) T(0.986) T(0.998) 
  19      8   CTTCC: C(0.877) T(0.541) T(0.537) 
  20      2   AAGAG: A(0.611) A(0.624) A(0.951) 
  21     10   TTTCT: T(0.937) T(0.999) T(1.000) 
  22      2   TCTCC: C(0.852) T(0.654) T(0.654) 
  23    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  24    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  25      8   CCTCC: C(0.994) C(0.975) C(0.997) 
  26    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  27    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  28     13   AAAGA: A(0.927) A(0.998) A(1.000) 
  29    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  30    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  31      4   CCTTC: C(0.610) C(0.647) C(0.953) 
  32     71   GGGGG: G(1.000) G(1.000) G(1.000) 
  33    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  34    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  35    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  36    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  37     14   CCCTC: C(0.923) C(0.998) C(1.000) 
  38     71   GGGGG: G(1.000) G(1.000) G(1.000) 
  39     71   GGGGG: G(1.000) G(1.000) G(1.000) 
  40    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  41    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  42    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  43      1   TTTCA: T(0.507) T(0.992) T(0.999) 
  44    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  45    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  46      4   AAAAC: A(0.992) A(1.000) A(1.000) 
  47    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  48    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  49      1   CCACT: C(0.950) C(0.987) C(0.999) 
  50    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  51    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  52      2   AAACC: C(0.942) A(0.997) A(1.000) 
  53     12   TTTCC: C(0.777) T(0.986) T(0.998) 
  54    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  55     15   AAAAG: A(0.961) A(0.999) A(1.000) 
  56      8   CTTCC: C(0.877) T(0.541) T(0.537) 
  57    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  58     13   AAAGA: A(0.927) A(0.998) A(1.000) 
  59    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  60    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  61    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  62    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  63     71   GGGGG: G(1.000) G(1.000) G(1.000) 
  64    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  65    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  66    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  67      1   AAAAT: A(0.995) A(1.000) A(1.000) 
  68     71   GGGGG: G(1.000) G(1.000) G(1.000) 
  69    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  70    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  71    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  72    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  73    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  74    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  75    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  76    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  77    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  78    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  79     11   CTCCC: C(0.998) C(0.996) C(0.982) 
  80    156   TTTTT: T(0.999) T(1.000) T(1.000) 
  81    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  82     11   CTCCC: C(0.998) C(0.996) C(0.982) 
  83     71   GGGGG: G(1.000) G(1.000) G(1.000) 
  84    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  85    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  86    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  87     71   GGGGG: G(1.000) G(1.000) G(1.000) 
  88      3   CCAAA: A(0.998) A(0.967) C(0.975) 
  89    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  90    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  91      4   TCCCT: C(0.895) C(0.929) C(0.908) 
  92    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  93    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  94    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  95    202   AAAAA: A(1.000) A(1.000) A(1.000) 
  96     71   GGGGG: G(1.000) G(1.000) G(1.000) 
  97      3   TTCCC: C(0.955) C(0.804) T(0.914) 
  98    184   CCCCC: C(0.999) C(1.000) C(1.000) 
  99     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 100    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 101    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 102    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 103    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 104    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 105    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 106    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 107    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 108    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 109      8   CTTCC: C(0.877) T(0.541) T(0.537) 
 110    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 111    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 112      5   CCCCA: C(0.989) C(1.000) C(1.000) 
 113    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 114    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 115      3   TCTTT: T(0.999) T(0.998) T(0.986) 
 116    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 117     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 118    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 119     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 120     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 121      1   AAACG: A(0.802) A(0.996) A(1.000) 
 122    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 123    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 124      3   TTCTC: T(0.825) T(0.840) T(0.983) 
 125    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 126    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 127    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 128     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 129    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 130      3   TTCTC: T(0.825) T(0.840) T(0.983) 
 131     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 132    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 133    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 134    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 135    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 136    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 137    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 138    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 139      4   AAACA: A(0.986) A(1.000) A(1.000) 
 140    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 141    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 142     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 143    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 144    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 145    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 146     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 147    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 148      8   TCCCC: C(0.998) C(0.994) C(0.971) 
 149      3   TTCCT: T(0.709) T(0.745) T(0.973) 
 150    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 151     12   TTTCC: C(0.777) T(0.986) T(0.998) 
 152    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 153     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 154    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 155    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 156     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 157    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 158    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 159    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 160      1   TCTTC: T(0.946) T(0.976) T(0.966) 
 161      4   CCCCG: C(0.994) C(1.000) C(1.000) 
 162      9   TTTTC: T(0.966) T(0.999) T(1.000) 
 163      9   AAGAA: A(0.995) A(0.977) A(0.997) 
 164     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 165    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 166    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 167    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 168     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 169    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 170    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 171    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 172    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 173      2   GGGAG: G(0.970) G(1.000) G(1.000) 
 174    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 175      3   TTCTT: T(0.996) T(0.982) T(0.998) 
 176    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 177    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 178    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 179    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 180    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 181     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 182     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 183    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 184    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 185      2   TCTCC: C(0.852) T(0.654) T(0.654) 
 186    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 187    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 188    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 189    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 190      5   CCCAC: C(0.981) C(1.000) C(1.000) 
 191    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 192    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 193     11   CTCCC: C(0.998) C(0.996) C(0.982) 
 194    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 195    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 196      4   TCCCT: C(0.895) C(0.929) C(0.908) 
 197    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 198    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 199     10   TTTCT: T(0.937) T(0.999) T(1.000) 
 200    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 201    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 202     11   CTCCC: C(0.998) C(0.996) C(0.982) 
 203    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 204    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 205      1   ACATC: C(0.606) A(0.702) A(0.702) 
 206    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 207    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 208      7   GAAAA: A(0.998) A(0.994) A(0.972) 
 209     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 210     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 211      1   AGAAT: A(0.994) A(0.996) A(0.982) 
 212     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 213    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 214      9   AAGAA: A(0.995) A(0.977) A(0.997) 
 215    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 216    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 217    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 218    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 219     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 220      8   TCCCC: C(0.998) C(0.994) C(0.971) 
 221     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 222    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 223      3   GGAAA: A(0.957) A(0.801) G(0.959) 
 224    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 225    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 226    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 227      5   GGGAA: A(0.786) G(0.994) G(1.000) 
 228    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 229     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 230      3   AAAGG: G(0.902) A(0.980) A(0.997) 
 231    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 232    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 233      1   ATAAT: A(0.991) A(0.996) A(0.995) 
 234     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 235      1   GAAAC: A(0.988) A(0.990) A(0.968) 
 236    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 237    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 238    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 239    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 240    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 241     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 242    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 243     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 244     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 245      1   TTTTG: T(0.966) T(0.999) T(1.000) 
 246    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 247      4   AAATA: A(0.990) A(1.000) A(1.000) 
 248    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 249    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 250      3   TTCCC: C(0.955) C(0.804) T(0.914) 
 251    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 252      1   TCCTC: C(0.816) C(0.878) C(0.859) 
 253     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 254    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 255    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 256      3   TTCCT: T(0.709) T(0.745) T(0.973) 
 257      2   CCCAA: A(0.954) C(0.996) C(1.000) 
 258    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 259      3   CCTCT: C(0.751) C(0.768) C(0.969) 
 260      2   CCTCA: C(0.968) C(0.959) C(0.995) 
 261      9   TTTTC: T(0.966) T(0.999) T(1.000) 
 262    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 263    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 264    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 265      1   TCTAC: C(0.502) T(0.792) T(0.788) 
 266    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 267    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 268      4   AAAAC: A(0.992) A(1.000) A(1.000) 
 269     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 270     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 271     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 272      8   CTTCC: C(0.877) T(0.541) T(0.537) 
 273      3   TTCTT: T(0.996) T(0.982) T(0.998) 
 274      8   CCTCC: C(0.994) C(0.975) C(0.997) 
 275    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 276    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 277    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 278     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 279    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 280    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 281    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 282    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 283    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 284      7   GAAAA: A(0.998) A(0.994) A(0.972) 
 285    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 286      8   CCTCC: C(0.994) C(0.975) C(0.997) 
 287    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 288    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 289     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 290      2   GGGAG: G(0.970) G(1.000) G(1.000) 
 291    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 292    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 293    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 294    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 295      1   AGGAA: A(0.846) G(0.712) G(0.710) 
 296    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 297    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 298    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 299    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 300    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 301     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 302    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 303    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 304      3   CCTCT: C(0.751) C(0.768) C(0.969) 
 305    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 306    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 307      4   CCTTC: C(0.610) C(0.647) C(0.953) 
 308    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 309    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 310      4   AGAAA: A(0.999) A(0.996) A(0.982) 
 311    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 312    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 313     10   TTTCT: T(0.937) T(0.999) T(1.000) 
 314    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 315     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 316    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 317    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 318     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 319    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 320    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 321    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 322    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 323    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 324    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 325    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 326     12   TTTCC: C(0.777) T(0.986) T(0.998) 
 327     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 328      7   GAAAA: A(0.998) A(0.994) A(0.972) 
 329     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 330     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 331     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 332      1   TTCAA: A(0.964) T(0.619) T(0.962) 
 333    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 334    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 335    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 336     10   TTTCT: T(0.937) T(0.999) T(1.000) 
 337     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 338    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 339    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 340      3   CCAAA: A(0.998) A(0.967) C(0.975) 
 341    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 342    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 343    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 344    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 345    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 346    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 347    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 348    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 349      3   TTCCT: T(0.709) T(0.745) T(0.973) 
 350    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 351      2   AACAA: A(0.999) A(0.997) A(1.000) 
 352      3   CTCCA: C(0.986) C(0.993) C(0.979) 
 353    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 354    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 355    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 356    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 357    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 358    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 359    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 360    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 361      4   AGAAA: A(0.999) A(0.996) A(0.982) 
 362    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 363    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 364     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 365    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 366    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 367      4   AAATA: A(0.990) A(1.000) A(1.000) 
 368      9   TTTTC: T(0.966) T(0.999) T(1.000) 
 369    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 370      8   CCTCC: C(0.994) C(0.975) C(0.997) 
 371    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 372    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 373    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 374    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 375     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 376      4   AAACA: A(0.986) A(1.000) A(1.000) 
 377     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 378    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 379    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 380    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 381    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 382      2   CTCTC: C(0.853) C(0.921) C(0.909) 
 383    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 384      3   CCTCT: C(0.751) C(0.768) C(0.969) 
 385      3   CTCCA: C(0.986) C(0.993) C(0.979) 
 386     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 387    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 388      5   CCCCA: C(0.989) C(1.000) C(1.000) 
 389    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 390    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 391      1   GAAGA: A(0.732) A(0.785) A(0.768) 
 392     12   TTTCC: C(0.777) T(0.986) T(0.998) 
 393    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 394      2   CTCCT: C(0.918) C(0.954) C(0.941) 
 395      1   ATAAA: A(1.000) A(1.000) A(0.999) 
 396    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 397      2   AAGAG: A(0.611) A(0.624) A(0.951) 
 398    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 399    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 400    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 401    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 402    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 403      4   AAAAC: A(0.992) A(1.000) A(1.000) 
 404    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 405     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 406    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 407    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 408    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 409    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 410      4   AAAAC: A(0.992) A(1.000) A(1.000) 
 411    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 412      8   TCCCC: C(0.998) C(0.994) C(0.971) 
 413    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 414    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 415    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 416    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 417    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 418     11   CTCCC: C(0.998) C(0.996) C(0.982) 
 419     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 420    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 421    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 422      1   TTTTA: T(0.988) T(1.000) T(1.000) 
 423    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 424    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 425    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 426    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 427    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 428    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 429    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 430     11   CTCCC: C(0.998) C(0.996) C(0.982) 
 431    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 432    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 433      2   CTCCT: C(0.918) C(0.954) C(0.941) 
 434      5   GGGAA: A(0.786) G(0.994) G(1.000) 
 435     13   AAAGA: A(0.927) A(0.998) A(1.000) 
 436      8   CTTCC: C(0.877) T(0.541) T(0.537) 
 437    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 438    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 439      8   CCTCC: C(0.994) C(0.975) C(0.997) 
 440    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 441    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 442      4   TCCCT: C(0.895) C(0.929) C(0.908) 
 443     13   AAAGA: A(0.927) A(0.998) A(1.000) 
 444    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 445      1   CTCTT: T(0.899) C(0.528) C(0.529) 
 446     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 447     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 448      1   GAGGC: G(0.993) G(0.998) G(0.993) 
 449    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 450    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 451      4   TCCCT: C(0.895) C(0.929) C(0.908) 
 452      1   TAAGA: A(0.927) A(0.998) A(0.997) 
 453    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 454     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 455      9   TTTTC: T(0.966) T(0.999) T(1.000) 
 456      5   CCCAC: C(0.981) C(1.000) C(1.000) 
 457      8   TCCCC: C(0.998) C(0.994) C(0.971) 
 458    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 459     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 460    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 461    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 462    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 463    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 464      9   TTTTC: T(0.966) T(0.999) T(1.000) 
 465    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 466    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 467    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 468     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 469    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 470    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 471    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 472    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 473    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 474     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 475    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 476    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 477    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 478    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 479    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 480    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 481    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 482    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 483      3   CCCTT: T(0.813) C(0.981) C(0.997) 
 484    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 485     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 486    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 487    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 488    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 489     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 490    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 491     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 492    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 493    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 494    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 495    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 496    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 497      5   GGGAA: A(0.786) G(0.994) G(1.000) 
 498    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 499      4   CCTTC: C(0.610) C(0.647) C(0.953) 
 500    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 501    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 502      3   CCCTT: T(0.813) C(0.981) C(0.997) 
 503    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 504     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 505     13   AAAGA: A(0.927) A(0.998) A(1.000) 
 506     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 507      1   GGGCG: G(0.991) G(1.000) G(1.000) 
 508    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 509     10   TTTCT: T(0.937) T(0.999) T(1.000) 
 510      8   TCCCC: C(0.998) C(0.994) C(0.971) 
 511     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 512      5   CCCCA: C(0.989) C(1.000) C(1.000) 
 513      3   GGAAA: A(0.957) A(0.801) G(0.959) 
 514    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 515    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 516    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 517     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 518    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 519    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 520    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 521     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 522      9   TTTTC: T(0.966) T(0.999) T(1.000) 
 523    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 524    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 525    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 526    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 527    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 528     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 529    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 530     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 531    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 532    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 533    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 534     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 535    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 536      9   TTTTC: T(0.966) T(0.999) T(1.000) 
 537     11   CTCCC: C(0.998) C(0.996) C(0.982) 
 538      9   AAGAA: A(0.995) A(0.977) A(0.997) 
 539      8   CTTCC: C(0.877) T(0.541) T(0.537) 
 540    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 541    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 542     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 543    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 544      9   AAGAA: A(0.995) A(0.977) A(0.997) 
 545    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 546    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 547     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 548    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 549    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 550    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 551    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 552     11   CTCCC: C(0.998) C(0.996) C(0.982) 
 553    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 554    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 555      4   AAATA: A(0.990) A(1.000) A(1.000) 
 556     12   TTTCC: C(0.777) T(0.986) T(0.998) 
 557      1   GAAAT: A(0.993) A(0.994) A(0.971) 
 558      3   CTCCA: C(0.986) C(0.993) C(0.979) 
 559     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 560    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 561    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 562      9   AAGAA: A(0.995) A(0.977) A(0.997) 
 563    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 564     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 565      1   TCCTT: T(0.921) T(0.589) T(0.592) 
 566      1   CCTGA: A(0.560) C(0.885) C(0.986) 
 567    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 568      7   GAAAA: A(0.998) A(0.994) A(0.972) 
 569    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 570    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 571    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 572    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 573    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 574    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 575    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 576     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 577     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 578    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 579    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 580    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 581    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 582    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 583    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 584    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 585    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 586     13   AAAGA: A(0.927) A(0.998) A(1.000) 
 587    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 588    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 589    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 590    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 591    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 592    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 593    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 594    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 595     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 596     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 597    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 598    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 599    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 600    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 601    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 602    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 603     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 604    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 605      3   TCTTT: T(0.999) T(0.998) T(0.986) 
 606    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 607    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 608    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 609    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 610      1   AGACA: A(0.982) A(0.993) A(0.979) 
 611    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 612    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 613     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 614     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 615    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 616    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 617    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 618    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 619    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 620     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 621     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 622      3   CCAAA: A(0.998) A(0.967) C(0.975) 
 623     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 624    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 625    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 626    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 627    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 628    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 629    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 630    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 631    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 632    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 633    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 634    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 635     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 636     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 637    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 638     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 639    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 640    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 641    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 642    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 643    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 644    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 645    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 646    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 647    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 648    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 649    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 650    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 651    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 652    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 653    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 654     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 655    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 656    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 657    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 658     10   TTTCT: T(0.937) T(0.999) T(1.000) 
 659    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 660      3   AAAGG: G(0.902) A(0.980) A(0.997) 
 661    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 662      2   CCTCA: C(0.968) C(0.959) C(0.995) 
 663    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 664    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 665     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 666      1   CTTTT: T(0.999) T(0.996) T(0.978) 
 667      4   AAATA: A(0.990) A(1.000) A(1.000) 
 668      2   CTCTC: C(0.853) C(0.921) C(0.909) 
 669      9   AAGAA: A(0.995) A(0.977) A(0.997) 
 670    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 671     12   TTTCC: C(0.777) T(0.986) T(0.998) 
 672    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 673    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 674      8   TCCCC: C(0.998) C(0.994) C(0.971) 
 675    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 676    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 677    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 678     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 679    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 680     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 681     13   AAAGA: A(0.927) A(0.998) A(1.000) 
 682     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 683     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 684      8   CTTCC: C(0.877) T(0.541) T(0.537) 
 685    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 686      4   AAACA: A(0.986) A(1.000) A(1.000) 
 687      9   AAGAA: A(0.995) A(0.977) A(0.997) 
 688    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 689      4   CCCCG: C(0.994) C(1.000) C(1.000) 
 690     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 691    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 692      7   GAAAA: A(0.998) A(0.994) A(0.972) 
 693    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 694    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 695      9   TTTTC: T(0.966) T(0.999) T(1.000) 
 696      3   TCTTT: T(0.999) T(0.998) T(0.986) 
 697    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 698    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 699      8   CTTCC: C(0.877) T(0.541) T(0.537) 
 700    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 701    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 702    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 703    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 704     10   TTTCT: T(0.937) T(0.999) T(1.000) 
 705    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 706     11   CTCCC: C(0.998) C(0.996) C(0.982) 
 707    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 708    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 709    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 710      8   CCTCC: C(0.994) C(0.975) C(0.997) 
 711    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 712    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 713      3   CCCTT: T(0.813) C(0.981) C(0.997) 
 714      2   CCCAA: A(0.954) C(0.996) C(1.000) 
 715     12   TTTCC: C(0.777) T(0.986) T(0.998) 
 716      1   TCTCA: C(0.585) T(0.760) T(0.757) 
 717      3   AAAGG: G(0.902) A(0.980) A(0.997) 
 718    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 719     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 720    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 721    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 722    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 723      8   CCTCC: C(0.994) C(0.975) C(0.997) 
 724    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 725     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 726      7   GAAAA: A(0.998) A(0.994) A(0.972) 
 727    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 728      3   TTCTT: T(0.996) T(0.982) T(0.998) 
 729    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 730    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 731      8   CCTCC: C(0.994) C(0.975) C(0.997) 
 732    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 733    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 734     12   TTTCC: C(0.777) T(0.986) T(0.998) 
 735    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 736    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 737     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 738    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 739    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 740    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 741    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 742    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 743     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 744    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 745      9   AAGAA: A(0.995) A(0.977) A(0.997) 
 746    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 747     10   TTTCT: T(0.937) T(0.999) T(1.000) 
 748     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 749    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 750    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 751    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 752     11   CTCCC: C(0.998) C(0.996) C(0.982) 
 753    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 754    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 755      4   CCCCG: C(0.994) C(1.000) C(1.000) 
 756    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 757    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 758     12   TTTCC: C(0.777) T(0.986) T(0.998) 
 759    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 760    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 761      3   TTCTC: T(0.825) T(0.840) T(0.983) 
 762     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 763    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 764      4   AGAAA: A(0.999) A(0.996) A(0.982) 
 765    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 766    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 767    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 768      1   TTTAA: A(0.968) T(0.997) T(1.000) 
 769     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 770      1   CCTGG: G(0.976) C(0.966) C(0.996) 
 771     13   AAAGA: A(0.927) A(0.998) A(1.000) 
 772     12   TTTCC: C(0.777) T(0.986) T(0.998) 
 773      3   TTCCC: C(0.955) C(0.804) T(0.914) 
 774      2   GAGAA: A(0.828) G(0.800) G(0.800) 
 775    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 776     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 777     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 778    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 779      1   AGAAC: A(0.989) A(0.994) A(0.980) 
 780    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 781    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 782     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 783     13   AAAGA: A(0.927) A(0.998) A(1.000) 
 784    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 785    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 786    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 787    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 788    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 789    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 790     10   TTTCT: T(0.937) T(0.999) T(1.000) 
 791      1   TCCTA: C(0.525) C(0.706) C(0.693) 
 792    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 793    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 794     11   CTCCC: C(0.998) C(0.996) C(0.982) 
 795    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 796     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 797      8   TCCCC: C(0.998) C(0.994) C(0.971) 
 798    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 799    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 800      1   CTCTA: C(0.589) C(0.794) C(0.786) 
 801      2   TTTAT: T(0.981) T(1.000) T(1.000) 
 802    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 803     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 804    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 805    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 806      5   CCCAC: C(0.981) C(1.000) C(1.000) 
 807    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 808    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 809    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 810    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 811     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 812    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 813    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 814    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 815    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 816    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 817    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 818      4   CCTTC: C(0.610) C(0.647) C(0.953) 
 819      2   AACAA: A(0.999) A(0.997) A(1.000) 
 820    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 821      1   GAACG: A(0.503) A(0.622) A(0.610) 
 822    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 823     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 824    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 825      5   CCCCA: C(0.989) C(1.000) C(1.000) 
 826      9   TTTTC: T(0.966) T(0.999) T(1.000) 
 827    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 828     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 829     13   AAAGA: A(0.927) A(0.998) A(1.000) 
 830      5   CCCAC: C(0.981) C(1.000) C(1.000) 
 831    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 832    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 833    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 834     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 835    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 836    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 837      5   GGGAA: A(0.786) G(0.994) G(1.000) 
 838      8   TCCCC: C(0.998) C(0.994) C(0.971) 
 839     12   TTTCC: C(0.777) T(0.986) T(0.998) 
 840    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 841    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 842     10   TTTCT: T(0.937) T(0.999) T(1.000) 
 843     13   AAAGA: A(0.927) A(0.998) A(1.000) 
 844    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 845     24   CCCCT: C(0.958) C(0.999) C(1.000) 
 846      2   TTTAT: T(0.981) T(1.000) T(1.000) 
 847    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 848      7   GAAAA: A(0.998) A(0.994) A(0.972) 
 849    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 850      9   AAGAA: A(0.995) A(0.977) A(0.997) 
 851    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 852    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 853     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 854      4   AGAAA: A(0.999) A(0.996) A(0.982) 
 855     14   CCCTC: C(0.923) C(0.998) C(1.000) 
 856     13   AAAGA: A(0.927) A(0.998) A(1.000) 
 857    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 858    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 859     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 860    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 861      5   GGGAA: A(0.786) G(0.994) G(1.000) 
 862    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 863      1   CAAAT: A(0.992) A(0.997) A(0.993) 
 864     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 865    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 866      4   AAACA: A(0.986) A(1.000) A(1.000) 
 867    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 868    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 869    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 870    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 871    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 872     13   AAAGA: A(0.927) A(0.998) A(1.000) 
 873    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 874    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 875     15   AAAAG: A(0.961) A(0.999) A(1.000) 
 876      2   AAACC: C(0.942) A(0.997) A(1.000) 
 877      1   CCTTT: T(0.971) T(0.849) C(0.887) 
 878      1   CCTAA: A(0.957) C(0.825) C(0.979) 
 879      4   CCCCG: C(0.994) C(1.000) C(1.000) 
 880    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 881      3   GGAAA: A(0.957) A(0.801) G(0.959) 
 882    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 883    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 884    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 885    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 886    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 887      5   CCCAC: C(0.981) C(1.000) C(1.000) 
 888    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 889    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 890    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 891    202   AAAAA: A(1.000) A(1.000) A(1.000) 
 892     71   GGGGG: G(1.000) G(1.000) G(1.000) 
 893    184   CCCCC: C(0.999) C(1.000) C(1.000) 
 894    156   TTTTT: T(0.999) T(1.000) T(1.000) 
 895    156   TTTTT: T(0.999) T(1.000) T(1.000) 

Summary of changes along branches.
Check root of tree for directions of change.

Branch 1:    6..7 

	  17 A 0.828 -> G 0.800
	  18 C 0.777 -> T 0.986
	  19 C 0.877 -> T 0.541
	  22 C 0.852 -> T 0.654
	  52 C 0.942 -> A 0.997
	  53 C 0.777 -> T 0.986
	  56 C 0.877 -> T 0.541
	 109 C 0.877 -> T 0.541
	 151 C 0.777 -> T 0.986
	 185 C 0.852 -> T 0.654
	 205 C 0.606 -> A 0.702
	 227 A 0.786 -> G 0.994
	 230 G 0.902 -> A 0.980
	 257 A 0.954 -> C 0.996
	 265 C 0.502 -> T 0.792
	 272 C 0.877 -> T 0.541
	 295 A 0.846 -> G 0.712
	 326 C 0.777 -> T 0.986
	 332 A 0.964 -> T 0.619
	 392 C 0.777 -> T 0.986
	 434 A 0.786 -> G 0.994
	 436 C 0.877 -> T 0.541
	 445 T 0.899 -> C 0.528
	 483 T 0.813 -> C 0.981
	 497 A 0.786 -> G 0.994
	 502 T 0.813 -> C 0.981
	 539 C 0.877 -> T 0.541
	 556 C 0.777 -> T 0.986
	 566 A 0.560 -> C 0.885
	 660 G 0.902 -> A 0.980
	 671 C 0.777 -> T 0.986
	 684 C 0.877 -> T 0.541
	 699 C 0.877 -> T 0.541
	 713 T 0.813 -> C 0.981
	 714 A 0.954 -> C 0.996
	 715 C 0.777 -> T 0.986
	 716 C 0.585 -> T 0.760
	 717 G 0.902 -> A 0.980
	 734 C 0.777 -> T 0.986
	 758 C 0.777 -> T 0.986
	 768 A 0.968 -> T 0.997
	 770 G 0.976 -> C 0.966
	 772 C 0.777 -> T 0.986
	 774 A 0.828 -> G 0.800
	 837 A 0.786 -> G 0.994
	 839 C 0.777 -> T 0.986
	 861 A 0.786 -> G 0.994
	 876 C 0.942 -> A 0.997
	 878 A 0.957 -> C 0.825


Branch 2:    7..8 

	  88 A 0.967 -> C 0.975
	  97 C 0.804 -> T 0.914
	 223 A 0.801 -> G 0.959
	 250 C 0.804 -> T 0.914
	 340 A 0.967 -> C 0.975
	 513 A 0.801 -> G 0.959
	 622 A 0.967 -> C 0.975
	 773 C 0.804 -> T 0.914
	 877 T 0.849 -> C 0.887
	 881 A 0.801 -> G 0.959


Branch 3:    8..1  (Human) 

	  19 T 0.537 -> C
	  56 T 0.537 -> C
	  91 C 0.908 -> T
	 109 T 0.537 -> C
	 148 C 0.971 -> T
	 196 C 0.908 -> T
	 208 A 0.972 -> G
	 220 C 0.971 -> T
	 235 A 0.968 -> G
	 252 C 0.859 -> T
	 272 T 0.537 -> C
	 284 A 0.972 -> G
	 295 G 0.710 -> A
	 328 A 0.972 -> G
	 391 A 0.768 -> G
	 412 C 0.971 -> T
	 436 T 0.537 -> C
	 442 C 0.908 -> T
	 451 C 0.908 -> T
	 452 A 0.997 -> T
	 457 C 0.971 -> T
	 510 C 0.971 -> T
	 539 T 0.537 -> C
	 557 A 0.971 -> G
	 568 A 0.972 -> G
	 666 T 0.978 -> C
	 674 C 0.971 -> T
	 684 T 0.537 -> C
	 692 A 0.972 -> G
	 699 T 0.537 -> C
	 726 A 0.972 -> G
	 791 C 0.693 -> T
	 797 C 0.971 -> T
	 821 A 0.610 -> G
	 838 C 0.971 -> T
	 848 A 0.972 -> G
	 863 A 0.993 -> C


Branch 4:    8..2  (Chimpanzee) 

	  17 G 0.800 -> A
	  22 T 0.654 -> C
	  79 C 0.982 -> T
	  82 C 0.982 -> T
	 115 T 0.986 -> C
	 160 T 0.966 -> C
	 185 T 0.654 -> C
	 193 C 0.982 -> T
	 202 C 0.982 -> T
	 205 A 0.702 -> C
	 211 A 0.982 -> G
	 233 A 0.995 -> T
	 265 T 0.788 -> C
	 310 A 0.982 -> G
	 352 C 0.979 -> T
	 361 A 0.982 -> G
	 382 C 0.909 -> T
	 385 C 0.979 -> T
	 394 C 0.941 -> T
	 395 A 0.999 -> T
	 418 C 0.982 -> T
	 430 C 0.982 -> T
	 433 C 0.941 -> T
	 445 C 0.529 -> T
	 448 G 0.993 -> A
	 537 C 0.982 -> T
	 552 C 0.982 -> T
	 558 C 0.979 -> T
	 565 T 0.592 -> C
	 605 T 0.986 -> C
	 610 A 0.979 -> G
	 668 C 0.909 -> T
	 696 T 0.986 -> C
	 706 C 0.982 -> T
	 716 T 0.757 -> C
	 752 C 0.982 -> T
	 764 A 0.982 -> G
	 774 G 0.800 -> A
	 779 A 0.980 -> G
	 794 C 0.982 -> T
	 800 C 0.786 -> T
	 854 A 0.982 -> G


Branch 5:    7..3  (Gorilla) 

	  20 A 0.624 -> G
	  25 C 0.975 -> T
	  31 C 0.647 -> T
	  49 C 0.987 -> A
	 124 T 0.840 -> C
	 130 T 0.840 -> C
	 149 T 0.745 -> C
	 163 A 0.977 -> G
	 175 T 0.982 -> C
	 214 A 0.977 -> G
	 256 T 0.745 -> C
	 259 C 0.768 -> T
	 260 C 0.959 -> T
	 273 T 0.982 -> C
	 274 C 0.975 -> T
	 286 C 0.975 -> T
	 304 C 0.768 -> T
	 307 C 0.647 -> T
	 332 T 0.619 -> C
	 349 T 0.745 -> C
	 351 A 0.997 -> C
	 370 C 0.975 -> T
	 384 C 0.768 -> T
	 397 A 0.624 -> G
	 439 C 0.975 -> T
	 499 C 0.647 -> T
	 538 A 0.977 -> G
	 544 A 0.977 -> G
	 562 A 0.977 -> G
	 565 T 0.589 -> C
	 566 C 0.885 -> T
	 662 C 0.959 -> T
	 669 A 0.977 -> G
	 687 A 0.977 -> G
	 710 C 0.975 -> T
	 723 C 0.975 -> T
	 728 T 0.982 -> C
	 731 C 0.975 -> T
	 745 A 0.977 -> G
	 761 T 0.840 -> C
	 770 C 0.966 -> T
	 818 C 0.647 -> T
	 819 A 0.997 -> C
	 850 A 0.977 -> G
	 878 C 0.825 -> T


Branch 6:    6..4  (Orangutan) 

	  21 T 0.937 -> C
	  28 A 0.927 -> G
	  31 C 0.610 -> T
	  37 C 0.923 -> T
	  43 T 0.507 -> C
	  58 A 0.927 -> G
	 121 A 0.802 -> C
	 139 A 0.986 -> C
	 149 T 0.709 -> C
	 173 G 0.970 -> A
	 181 C 0.923 -> T
	 190 C 0.981 -> A
	 199 T 0.937 -> C
	 205 C 0.606 -> T
	 234 C 0.923 -> T
	 241 C 0.923 -> T
	 247 A 0.990 -> T
	 252 C 0.816 -> T
	 256 T 0.709 -> C
	 265 C 0.502 -> A
	 290 G 0.970 -> A
	 301 C 0.923 -> T
	 307 C 0.610 -> T
	 313 T 0.937 -> C
	 331 C 0.923 -> T
	 336 T 0.937 -> C
	 349 T 0.709 -> C
	 364 C 0.923 -> T
	 367 A 0.990 -> T
	 376 A 0.986 -> C
	 382 C 0.853 -> T
	 391 A 0.732 -> G
	 419 C 0.923 -> T
	 435 A 0.927 -> G
	 443 A 0.927 -> G
	 452 A 0.927 -> G
	 456 C 0.981 -> A
	 499 C 0.610 -> T
	 505 A 0.927 -> G
	 507 G 0.991 -> C
	 509 T 0.937 -> C
	 555 A 0.990 -> T
	 559 C 0.923 -> T
	 566 A 0.560 -> G
	 586 A 0.927 -> G
	 610 A 0.982 -> C
	 623 C 0.923 -> T
	 658 T 0.937 -> C
	 667 A 0.990 -> T
	 668 C 0.853 -> T
	 680 C 0.923 -> T
	 681 A 0.927 -> G
	 686 A 0.986 -> C
	 690 C 0.923 -> T
	 704 T 0.937 -> C
	 719 C 0.923 -> T
	 747 T 0.937 -> C
	 771 A 0.927 -> G
	 783 A 0.927 -> G
	 790 T 0.937 -> C
	 791 C 0.525 -> T
	 800 C 0.589 -> T
	 801 T 0.981 -> A
	 806 C 0.981 -> A
	 818 C 0.610 -> T
	 821 A 0.503 -> C
	 829 A 0.927 -> G
	 830 C 0.981 -> A
	 842 T 0.937 -> C
	 843 A 0.927 -> G
	 846 T 0.981 -> A
	 855 C 0.923 -> T
	 856 A 0.927 -> G
	 866 A 0.986 -> C
	 872 A 0.927 -> G
	 887 C 0.981 -> A


Branch 7:    6..5  (Gibbon) 

	   7 C 0.958 -> T
	  10 C 0.989 -> A
	  13 C 0.958 -> T
	  20 A 0.611 -> G
	  43 T 0.507 -> A
	  46 A 0.992 -> C
	  49 C 0.950 -> T
	  55 A 0.961 -> G
	  67 A 0.995 -> T
	  91 C 0.895 -> T
	 112 C 0.989 -> A
	 117 A 0.961 -> G
	 121 A 0.802 -> G
	 124 T 0.825 -> C
	 128 A 0.961 -> G
	 130 T 0.825 -> C
	 131 C 0.958 -> T
	 142 A 0.961 -> G
	 160 T 0.946 -> C
	 161 C 0.994 -> G
	 162 T 0.966 -> C
	 196 C 0.895 -> T
	 211 A 0.994 -> T
	 219 C 0.958 -> T
	 229 A 0.961 -> G
	 233 A 0.991 -> T
	 235 A 0.988 -> C
	 244 A 0.961 -> G
	 245 T 0.966 -> G
	 253 C 0.958 -> T
	 259 C 0.751 -> T
	 260 C 0.968 -> A
	 261 T 0.966 -> C
	 268 A 0.992 -> C
	 271 A 0.961 -> G
	 278 A 0.961 -> G
	 289 A 0.961 -> G
	 304 C 0.751 -> T
	 315 C 0.958 -> T
	 318 C 0.958 -> T
	 337 C 0.958 -> T
	 352 C 0.986 -> A
	 368 T 0.966 -> C
	 384 C 0.751 -> T
	 385 C 0.986 -> A
	 386 C 0.958 -> T
	 388 C 0.989 -> A
	 394 C 0.918 -> T
	 397 A 0.611 -> G
	 403 A 0.992 -> C
	 405 C 0.958 -> T
	 410 A 0.992 -> C
	 422 T 0.988 -> A
	 433 C 0.918 -> T
	 442 C 0.895 -> T
	 448 G 0.993 -> C
	 451 C 0.895 -> T
	 454 C 0.958 -> T
	 455 T 0.966 -> C
	 464 T 0.966 -> C
	 474 C 0.958 -> T
	 511 A 0.961 -> G
	 512 C 0.989 -> A
	 517 C 0.958 -> T
	 521 A 0.961 -> G
	 522 T 0.966 -> C
	 536 T 0.966 -> C
	 557 A 0.993 -> T
	 558 C 0.986 -> A
	 662 C 0.968 -> A
	 678 A 0.961 -> G
	 682 C 0.958 -> T
	 683 C 0.958 -> T
	 689 C 0.994 -> G
	 695 T 0.966 -> C
	 716 C 0.585 -> A
	 725 C 0.958 -> T
	 737 C 0.958 -> T
	 743 A 0.961 -> G
	 748 C 0.958 -> T
	 755 C 0.994 -> G
	 761 T 0.825 -> C
	 769 C 0.958 -> T
	 776 C 0.958 -> T
	 779 A 0.989 -> C
	 782 C 0.958 -> T
	 791 C 0.525 -> A
	 800 C 0.589 -> A
	 803 C 0.958 -> T
	 811 C 0.958 -> T
	 821 A 0.503 -> G
	 825 C 0.989 -> A
	 826 T 0.966 -> C
	 845 C 0.958 -> T
	 863 A 0.992 -> T
	 864 A 0.961 -> G
	 875 A 0.961 -> G
	 879 C 0.994 -> G




List of extant and reconstructed sequences

     8    895

Human             AAGCTTCACC GGCGCAGTCA TTCTCATAAT CGCCCACGGA CTTACATCCT CATTACTATT CTGCCTAGCA AACTCAAACT ACGAACGCAC TCACAGTCGC ATCATAATCC TCTCTCAAGG ACTTCAAACT CTACTCCCAC TAATAGCTTT TTGATGACTT CTAGCAAGCC TCGCTAACCT CGCCTTACCC CCCACTATTA ACCTACTGGG AGAACTCTCT GTGCTAGTAA CCACGTTCTC CTGATCAAAT ATCACTCTCC TACTTACAGG ACTCAACATA CTAGTCACAG CCCTATACTC CCTCTACATA TTTACCACAA CACAATGGGG CTCACTCACC CACCACATTA ACAACATAAA ACCCTCATTC ACACGAGAAA ACACCCTCAT GTTCATACAC CTATCCCCCA TTCTCCTCCT ATCCCTCAAC CCCGACATCA TTACCGGGTT TTCCTCTTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA ACAGAGGCTT ACGACCCCTT ATTTACCGAG AAAGCTCACA AGAACTGCTA ACTCATGCCC CATGTCTGAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GCCCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAA CCATGCACAC TACTATAACC ACCCTAACCC TGACTTCCCT AATTCCCCCC ATCCTTACCA CCCTCGTTAA CCCTAACAAA AAAAACTCAT ACCCCCATTA TGTAAAATCC ATTGTCGCAT CCACCTTTAT TATCAGTCTC TTCCCCACAA CAATATTCAT GTGCCTAGAC CAAGAAGTTA TTATCTCGAA CTGACACTGA GCCACAACCC AAACAACCCA GCTCTCCCTA AGCTT
Chimpanzee        AAGCTTCACC GGCGCAATTA TCCTCATAAT CGCCCACGGA CTTACATCCT CATTATTATT CTGCCTAGCA AACTCAAATT ATGAACGCAC CCACAGTCGC ATCATAATTC TCTCCCAAGG ACTTCAAACT CTACTCCCAC TAATAGCCTT TTGATGACTC CTAGCAAGCC TCGCTAACCT CGCCCTACCC CCTACCATTA ATCTCCTAGG GGAACTCTCC GTGCTAGTAA CCTCATTCTC CTGATCAAAT ACCACTCTCC TACTCACAGG ATTCAACATA CTAATCACAG CCCTGTACTC CCTCTACATG TTTACCACAA CACAATGAGG CTCACTCACC CACCACATTA ATAACATAAA GCCCTCATTC ACACGAGAAA ATACTCTCAT ATTTTTACAC CTATCCCCCA TCCTCCTTCT ATCCCTCAAT CCTGATATCA TCACTGGATT CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA ACAGAGGCTC ACGACCCCTT ATTTACCGAG AAAGCTTATA AGAACTGCTA ATTCATATCC CATGCCTAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCCATCCG TTGGTCTTAG GCCCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAA CCATGTATAC TACCATAACC ACCTTAACCC TAACTCCCTT AATTCTCCCC ATCCTCACCA CCCTCATTAA CCCTAACAAA AAAAACTCAT ATCCCCATTA TGTGAAATCC ATTATCGCGT CCACCTTTAT CATTAGCCTT TTCCCCACAA CAATATTCAT ATGCCTAGAC CAAGAAGCTA TTATCTCAAA CTGGCACTGA GCAACAACCC AAACAACCCA GCTCTCCCTA AGCTT
Gorilla           AAGCTTCACC GGCGCAGTTG TTCTTATAAT TGCCCACGGA CTTACATCAT CATTATTATT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC ATCATAATTC TCTCTCAAGG ACTCCAAACC CTACTCCCAC TAATAGCCCT TTGATGACTT CTGGCAAGCC TCGCCAACCT CGCCTTACCC CCCACCATTA ACCTACTAGG AGAGCTCTCC GTACTAGTAA CCACATTCTC CTGATCAAAC ACCACCCTTT TACTTACAGG ATCTAACATA CTAATTACAG CCCTGTACTC CCTTTATATA TTTACCACAA CACAATGAGG CCCACTCACA CACCACATCA CCAACATAAA ACCCTCATTT ACACGAGAAA ACATCCTCAT ATTCATGCAC CTATCCCCCA TCCTCCTCCT ATCCCTCAAC CCCGATATTA TCACCGGGTT CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGATA ACAGAGGCTC ACAACCCCTT ATTTACCGAG AAAGCTCGTA AGAGCTGCTA ACTCATACCC CGTGCTTAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GACCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAA CTATGTACGC TACCATAACC ACCTTAGCCC TAACTTCCTT AATTCCCCCT ATCCTTACCA CCTTCATCAA TCCTAACAAA AAAAGCTCAT ACCCCCATTA CGTAAAATCT ATCGTCGCAT CCACCTTTAT CATCAGCCTC TTCCCCACAA CAATATTTCT ATGCCTAGAC CAAGAAGCTA TTATCTCAAG CTGACACTGA GCAACAACCC AAACAATTCA ACTCTCCCTA AGCTT
Orangutan         AAGCTTCACC GGCGCAACCA CCCTCATGAT TGCCCATGGA CTCACATCCT CCCTACTGTT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC ATCATAATCC TCTCTCAAGG CCTTCAAACT CTACTCCCCC TAATAGCCCT CTGATGACTT CTAGCAAGCC TCACTAACCT TGCCCTACCA CCCACCATCA ACCTTCTAGG AGAACTCTCC GTACTAATAG CCATATTCTC TTGATCTAAC ATCACCATCC TACTAACAGG ACTCAACATA CTAATCACAA CCCTATACTC TCTCTATATA TTCACCACAA CACAACGAGG TACACCCACA CACCACATCA ACAACATAAA ACCTTCTTTC ACACGCGAAA ATACCCTCAT GCTCATACAC CTATCCCCCA TCCTCCTCTT ATCCCTCAAC CCCAGCATCA TCGCTGGGTT CGCCTACTGT AAATATAGTT TAACCAAAAC ATTAGATTGT GAATCTAATA ATAGGGCCCC ACAACCCCTT ATTTACCGAG AAAGCTCACA AGAACTGCTA ACTCTCACTC CATGTGTAAC AACATGGCTT TCTCAGCTTT TAAAGGATAA CAGCTATCCC TTGGTCTTAG GATCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAACAG CCATGTTTAC CACCATAACT GCCCTCACCT TAACTTCCCT AATCCCCCCC ATTACCGCTA CCCTCATTAA CCCCAACAAA AAAAACCCAT ACCCCCACTA TGTAAAAACG GCCATCGCAT CCGCCTTTAC TATCAGCCTT ATCCCAACAA CAATATTTAT CTGCCTAGGA CAAGAAACCA TCGTCACAAA CTGATGCTGA ACAACCACCC AGACACTACA ACTCTCACTA AGCTT
Gibbon            AAGCTTTACA GGTGCAACCG TCCTCATAAT CGCCCACGGA CTAACCTCTT CCCTGCTATT CTGCCTTGCA AACTCAAACT ACGAACGAAC TCACAGCCGC ATCATAATCC TATCTCGAGG GCTCCAAGCC TTACTCCCAC TGATAGCCTT CTGATGACTC GCAGCAAGCC TCGCTAACCT CGCCCTACCC CCCACTATTA ACCTCCTAGG TGAACTCTTC GTACTAATGG CCTCCTTCTC CTGGGCAAAC ACTACTATTA CACTCACCGG GCTCAACGTA CTAATCACGG CCCTATACTC CCTTTACATA TTTATCATAA CACAACGAGG CACACTTACA CACCACATTA AAAACATAAA ACCCTCACTC ACACGAGAAA ACATATTAAT ACTTATGCAC CTCTTCCCCC TCCTCCTCCT AACCCTCAAC CCTAACATCA TTACTGGCTT TACTCCCTGT AAACATAGTT TAATCAAAAC ATTAGATTGT GAATCTAACA ATAGAGGCTC GAAACCTCTT GCTTACCGAG AAAGCCCACA AGAACTGCTA ACTCACTACC CATGTATAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GACCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAG CAATGTACAC CACCATAGCC ATTCTAACGC TAACCTCCCT AATTCCCCCC ATTACAGCCA CCCTTATTAA CCCCAATAAA AAGAACTTAT ACCCGCACTA CGTAAAAATG ACCATTGCCT CTACCTTTAT AATCAGCCTA TTTCCCACAA TAATATTCAT GTGCACAGAC CAAGAAACCA TTATTTCAAA CTGACACTGA ACTGCAACCC AAACGCTAGA ACTCTCCCTA AGCTT
node #6           AAGCTTCACC GGCGCAACCA TCCTCATAAT CGCCCACGGA CTTACATCCT CCCTACTATT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC ATCATAATCC TCTCTCAAGG ACTTCAAACT CTACTCCCAC TAATAGCCTT CTGATGACTT CTAGCAAGCC TCGCTAACCT CGCCCTACCC CCCACCATTA ACCTCCTAGG AGAACTCTCC GTACTAATAG CCACATTCTC CTGATCAAAC ACCACTATCC TACTCACAGG ACTCAACATA CTAATCACAG CCCTATACTC CCTCTACATA TTTACCACAA CACAACGAGG CACACTCACA CACCACATTA ACAACATAAA ACCCTCATTC ACACGAGAAA ACACCCTCAT ACTCATACAC CTATCCCCCA TCCTCCTCCT ATCCCTCAAC CCCAACATCA TCACTGGGTT CACCTCCTGT AAATATAGTT TAACCAAAAC ATTAGATTGT GAATCTAACA ATAGAGGCTC ACAACCCCTT ATTTACCGAG AAAGCTCACA AGAACTGCTA ACTCACACCC CATGTATAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GACCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAG CCATGTACAC CACCATAACC ACCCTAACCC TAACTTCCCT AATTCCCCCC ATTACCGCCA CCCTCATTAA CCCCAACAAA AAAAACTCAT ACCCCCACTA TGTAAAAACG ACCATCGCAT CCACCTTTAT CATCAGCCTC TTCCCCACAA CAATATTCAT ATGCCTAGAC CAAGAAACCA TTATCTCAAA CTGACACTGA ACAACAACCC AAACACTACA ACTCTCCCTA AGCTT
node #7           AAGCTTCACC GGCGCAGTTA TTCTCATAAT CGCCCACGGA CTTACATCCT CATTATTATT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC ATCATAATTC TCTCTCAAGG ACTTCAAACT CTACTCCCAC TAATAGCCTT TTGATGACTT CTAGCAAGCC TCGCTAACCT CGCCTTACCC CCCACCATTA ACCTACTAGG AGAACTCTCC GTACTAGTAA CCACATTCTC CTGATCAAAC ACCACTCTCC TACTTACAGG ATTCAACATA CTAATCACAG CCCTGTACTC CCTCTACATA TTTACCACAA CACAATGAGG CTCACTCACA CACCACATTA ACAACATAAA ACCCTCATTC ACACGAGAAA ACACCCTCAT ATTCATACAC CTATCCCCCA TCCTCCTCCT ATCCCTCAAC CCCGATATCA TCACCGGGTT CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA ACAGAGGCTC ACAACCCCTT ATTTACCGAG AAAGCTCATA AGAACTGCTA ACTCATACCC CATGTCTAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GACCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAA CCATGTACAC TACCATAACC ACCTTAACCC TAACTTCCTT AATTCCCCCC ATCCTTACCA CCCTCATTAA CCCTAACAAA AAAAACTCAT ACCCCCATTA TGTAAAATCC ATCGTCGCAT CCACCTTTAT CATCAGCCTC TTCCCCACAA CAATATTCAT ATGCCTAGAC CAAGAAGCTA TTATCTCAAA CTGACACTGA GCAACAACCC AAACAATCCA ACTCTCCCTA AGCTT
node #8           AAGCTTCACC GGCGCAGTTA TTCTCATAAT CGCCCACGGA CTTACATCCT CATTATTATT CTGCCTAGCA AACTCAAACT ACGAACGCAC CCACAGTCGC ATCATAATTC TCTCTCAAGG ACTTCAAACT CTACTCCCAC TAATAGCCTT TTGATGACTT CTAGCAAGCC TCGCTAACCT CGCCTTACCC CCCACCATTA ACCTACTAGG AGAACTCTCC GTGCTAGTAA CCACATTCTC CTGATCAAAT ACCACTCTCC TACTTACAGG ATTCAACATA CTAATCACAG CCCTGTACTC CCTCTACATA TTTACCACAA CACAATGAGG CTCACTCACC CACCACATTA ACAACATAAA ACCCTCATTC ACACGAGAAA ACACCCTCAT ATTCATACAC CTATCCCCCA TCCTCCTCCT ATCCCTCAAC CCCGATATCA TCACCGGGTT CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA ACAGAGGCTC ACGACCCCTT ATTTACCGAG AAAGCTCATA AGAACTGCTA ACTCATACCC CATGTCTAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GCCCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAA CCATGTACAC TACCATAACC ACCTTAACCC TAACTTCCTT AATTCCCCCC ATCCTTACCA CCCTCATTAA CCCTAACAAA AAAAACTCAT ACCCCCATTA TGTAAAATCC ATTGTCGCAT CCACCTTTAT CATCAGCCTC TTCCCCACAA CAATATTCAT ATGCCTAGAC CAAGAAGCTA TTATCTCAAA CTGACACTGA GCAACAACCC AAACAACCCA GCTCTCCCTA AGCTT


Overall accuracy of the 3 ancestral sequences:
  0.97463  0.98216  0.98774
for a site.

  0.00000  0.00000  0.00000
for the sequence.


Counts of changes at sites

   1  (0)
   2  (0)
   3  (0)
   4  (0)
   5  (0)
   6  (0)
   7  CT (1)
   8  (0)
   9  (0)
  10  CA (1)
  11  (0)
  12  (0)
  13  CT (1)
  14  (0)
  15  (0)
  16  (0)
  17  GA AG (2)
  18  CT (1)
  19  TC CT (2)
  20  AG AG (2)
  21  TC (1)
  22  TC CT (2)
  23  (0)
  24  (0)
  25  CT (1)
  26  (0)
  27  (0)
  28  AG (1)
  29  (0)
  30  (0)
  31  CT CT (2)
  32  (0)
  33  (0)
  34  (0)
  35  (0)
  36  (0)
  37  CT (1)
  38  (0)
  39  (0)
  40  (0)
  41  (0)
  42  (0)
  43  TC TA (2)
  44  (0)
  45  (0)
  46  AC (1)
  47  (0)
  48  (0)
  49  CA CT (2)
  50  (0)
  51  (0)
  52  CA (1)
  53  CT (1)
  54  (0)
  55  AG (1)
  56  TC CT (2)
  57  (0)
  58  AG (1)
  59  (0)
  60  (0)
  61  (0)
  62  (0)
  63  (0)
  64  (0)
  65  (0)
  66  (0)
  67  AT (1)
  68  (0)
  69  (0)
  70  (0)
  71  (0)
  72  (0)
  73  (0)
  74  (0)
  75  (0)
  76  (0)
  77  (0)
  78  (0)
  79  CT (1)
  80  (0)
  81  (0)
  82  CT (1)
  83  (0)
  84  (0)
  85  (0)
  86  (0)
  87  (0)
  88  AC (1)
  89  (0)
  90  (0)
  91  CT CT (2)
  92  (0)
  93  (0)
  94  (0)
  95  (0)
  96  (0)
  97  CT (1)
  98  (0)
  99  (0)
 100  (0)
 101  (0)
 102  (0)
 103  (0)
 104  (0)
 105  (0)
 106  (0)
 107  (0)
 108  (0)
 109  TC CT (2)
 110  (0)
 111  (0)
 112  CA (1)
 113  (0)
 114  (0)
 115  TC (1)
 116  (0)
 117  AG (1)
 118  (0)
 119  (0)
 120  (0)
 121  AC AG (2)
 122  (0)
 123  (0)
 124  TC TC (2)
 125  (0)
 126  (0)
 127  (0)
 128  AG (1)
 129  (0)
 130  TC TC (2)
 131  CT (1)
 132  (0)
 133  (0)
 134  (0)
 135  (0)
 136  (0)
 137  (0)
 138  (0)
 139  AC (1)
 140  (0)
 141  (0)
 142  AG (1)
 143  (0)
 144  (0)
 145  (0)
 146  (0)
 147  (0)
 148  CT (1)
 149  TC TC (2)
 150  (0)
 151  CT (1)
 152  (0)
 153  (0)
 154  (0)
 155  (0)
 156  (0)
 157  (0)
 158  (0)
 159  (0)
 160  TC TC (2)
 161  CG (1)
 162  TC (1)
 163  AG (1)
 164  (0)
 165  (0)
 166  (0)
 167  (0)
 168  (0)
 169  (0)
 170  (0)
 171  (0)
 172  (0)
 173  GA (1)
 174  (0)
 175  TC (1)
 176  (0)
 177  (0)
 178  (0)
 179  (0)
 180  (0)
 181  CT (1)
 182  (0)
 183  (0)
 184  (0)
 185  TC CT (2)
 186  (0)
 187  (0)
 188  (0)
 189  (0)
 190  CA (1)
 191  (0)
 192  (0)
 193  CT (1)
 194  (0)
 195  (0)
 196  CT CT (2)
 197  (0)
 198  (0)
 199  TC (1)
 200  (0)
 201  (0)
 202  CT (1)
 203  (0)
 204  (0)
 205  AC CT CA (3)
 206  (0)
 207  (0)
 208  AG (1)
 209  (0)
 210  (0)
 211  AG AT (2)
 212  (0)
 213  (0)
 214  AG (1)
 215  (0)
 216  (0)
 217  (0)
 218  (0)
 219  CT (1)
 220  CT (1)
 221  (0)
 222  (0)
 223  AG (1)
 224  (0)
 225  (0)
 226  (0)
 227  AG (1)
 228  (0)
 229  AG (1)
 230  GA (1)
 231  (0)
 232  (0)
 233  AT AT (2)
 234  CT (1)
 235  AG AC (2)
 236  (0)
 237  (0)
 238  (0)
 239  (0)
 240  (0)
 241  CT (1)
 242  (0)
 243  (0)
 244  AG (1)
 245  TG (1)
 246  (0)
 247  AT (1)
 248  (0)
 249  (0)
 250  CT (1)
 251  (0)
 252  CT CT (2)
 253  CT (1)
 254  (0)
 255  (0)
 256  TC TC (2)
 257  AC (1)
 258  (0)
 259  CT CT (2)
 260  CT CA (2)
 261  TC (1)
 262  (0)
 263  (0)
 264  (0)
 265  TC CA CT (3)
 266  (0)
 267  (0)
 268  AC (1)
 269  (0)
 270  (0)
 271  AG (1)
 272  TC CT (2)
 273  TC (1)
 274  CT (1)
 275  (0)
 276  (0)
 277  (0)
 278  AG (1)
 279  (0)
 280  (0)
 281  (0)
 282  (0)
 283  (0)
 284  AG (1)
 285  (0)
 286  CT (1)
 287  (0)
 288  (0)
 289  AG (1)
 290  GA (1)
 291  (0)
 292  (0)
 293  (0)
 294  (0)
 295  GA AG (2)
 296  (0)
 297  (0)
 298  (0)
 299  (0)
 300  (0)
 301  CT (1)
 302  (0)
 303  (0)
 304  CT CT (2)
 305  (0)
 306  (0)
 307  CT CT (2)
 308  (0)
 309  (0)
 310  AG (1)
 311  (0)
 312  (0)
 313  TC (1)
 314  (0)
 315  CT (1)
 316  (0)
 317  (0)
 318  CT (1)
 319  (0)
 320  (0)
 321  (0)
 322  (0)
 323  (0)
 324  (0)
 325  (0)
 326  CT (1)
 327  (0)
 328  AG (1)
 329  (0)
 330  (0)
 331  CT (1)
 332  TC AT (2)
 333  (0)
 334  (0)
 335  (0)
 336  TC (1)
 337  CT (1)
 338  (0)
 339  (0)
 340  AC (1)
 341  (0)
 342  (0)
 343  (0)
 344  (0)
 345  (0)
 346  (0)
 347  (0)
 348  (0)
 349  TC TC (2)
 350  (0)
 351  AC (1)
 352  CT CA (2)
 353  (0)
 354  (0)
 355  (0)
 356  (0)
 357  (0)
 358  (0)
 359  (0)
 360  (0)
 361  AG (1)
 362  (0)
 363  (0)
 364  CT (1)
 365  (0)
 366  (0)
 367  AT (1)
 368  TC (1)
 369  (0)
 370  CT (1)
 371  (0)
 372  (0)
 373  (0)
 374  (0)
 375  (0)
 376  AC (1)
 377  (0)
 378  (0)
 379  (0)
 380  (0)
 381  (0)
 382  CT CT (2)
 383  (0)
 384  CT CT (2)
 385  CT CA (2)
 386  CT (1)
 387  (0)
 388  CA (1)
 389  (0)
 390  (0)
 391  AG AG (2)
 392  CT (1)
 393  (0)
 394  CT CT (2)
 395  AT (1)
 396  (0)
 397  AG AG (2)
 398  (0)
 399  (0)
 400  (0)
 401  (0)
 402  (0)
 403  AC (1)
 404  (0)
 405  CT (1)
 406  (0)
 407  (0)
 408  (0)
 409  (0)
 410  AC (1)
 411  (0)
 412  CT (1)
 413  (0)
 414  (0)
 415  (0)
 416  (0)
 417  (0)
 418  CT (1)
 419  CT (1)
 420  (0)
 421  (0)
 422  TA (1)
 423  (0)
 424  (0)
 425  (0)
 426  (0)
 427  (0)
 428  (0)
 429  (0)
 430  CT (1)
 431  (0)
 432  (0)
 433  CT CT (2)
 434  AG (1)
 435  AG (1)
 436  TC CT (2)
 437  (0)
 438  (0)
 439  CT (1)
 440  (0)
 441  (0)
 442  CT CT (2)
 443  AG (1)
 444  (0)
 445  CT TC (2)
 446  (0)
 447  (0)
 448  GA GC (2)
 449  (0)
 450  (0)
 451  CT CT (2)
 452  AT AG (2)
 453  (0)
 454  CT (1)
 455  TC (1)
 456  CA (1)
 457  CT (1)
 458  (0)
 459  (0)
 460  (0)
 461  (0)
 462  (0)
 463  (0)
 464  TC (1)
 465  (0)
 466  (0)
 467  (0)
 468  (0)
 469  (0)
 470  (0)
 471  (0)
 472  (0)
 473  (0)
 474  CT (1)
 475  (0)
 476  (0)
 477  (0)
 478  (0)
 479  (0)
 480  (0)
 481  (0)
 482  (0)
 483  TC (1)
 484  (0)
 485  (0)
 486  (0)
 487  (0)
 488  (0)
 489  (0)
 490  (0)
 491  (0)
 492  (0)
 493  (0)
 494  (0)
 495  (0)
 496  (0)
 497  AG (1)
 498  (0)
 499  CT CT (2)
 500  (0)
 501  (0)
 502  TC (1)
 503  (0)
 504  (0)
 505  AG (1)
 506  (0)
 507  GC (1)
 508  (0)
 509  TC (1)
 510  CT (1)
 511  AG (1)
 512  CA (1)
 513  AG (1)
 514  (0)
 515  (0)
 516  (0)
 517  CT (1)
 518  (0)
 519  (0)
 520  (0)
 521  AG (1)
 522  TC (1)
 523  (0)
 524  (0)
 525  (0)
 526  (0)
 527  (0)
 528  (0)
 529  (0)
 530  (0)
 531  (0)
 532  (0)
 533  (0)
 534  (0)
 535  (0)
 536  TC (1)
 537  CT (1)
 538  AG (1)
 539  TC CT (2)
 540  (0)
 541  (0)
 542  (0)
 543  (0)
 544  AG (1)
 545  (0)
 546  (0)
 547  (0)
 548  (0)
 549  (0)
 550  (0)
 551  (0)
 552  CT (1)
 553  (0)
 554  (0)
 555  AT (1)
 556  CT (1)
 557  AG AT (2)
 558  CT CA (2)
 559  CT (1)
 560  (0)
 561  (0)
 562  AG (1)
 563  (0)
 564  (0)
 565  TC TC (2)
 566  CT AG AC (3)
 567  (0)
 568  AG (1)
 569  (0)
 570  (0)
 571  (0)
 572  (0)
 573  (0)
 574  (0)
 575  (0)
 576  (0)
 577  (0)
 578  (0)
 579  (0)
 580  (0)
 581  (0)
 582  (0)
 583  (0)
 584  (0)
 585  (0)
 586  AG (1)
 587  (0)
 588  (0)
 589  (0)
 590  (0)
 591  (0)
 592  (0)
 593  (0)
 594  (0)
 595  (0)
 596  (0)
 597  (0)
 598  (0)
 599  (0)
 600  (0)
 601  (0)
 602  (0)
 603  (0)
 604  (0)
 605  TC (1)
 606  (0)
 607  (0)
 608  (0)
 609  (0)
 610  AG AC (2)
 611  (0)
 612  (0)
 613  (0)
 614  (0)
 615  (0)
 616  (0)
 617  (0)
 618  (0)
 619  (0)
 620  (0)
 621  (0)
 622  AC (1)
 623  CT (1)
 624  (0)
 625  (0)
 626  (0)
 627  (0)
 628  (0)
 629  (0)
 630  (0)
 631  (0)
 632  (0)
 633  (0)
 634  (0)
 635  (0)
 636  (0)
 637  (0)
 638  (0)
 639  (0)
 640  (0)
 641  (0)
 642  (0)
 643  (0)
 644  (0)
 645  (0)
 646  (0)
 647  (0)
 648  (0)
 649  (0)
 650  (0)
 651  (0)
 652  (0)
 653  (0)
 654  (0)
 655  (0)
 656  (0)
 657  (0)
 658  TC (1)
 659  (0)
 660  GA (1)
 661  (0)
 662  CT CA (2)
 663  (0)
 664  (0)
 665  (0)
 666  TC (1)
 667  AT (1)
 668  CT CT (2)
 669  AG (1)
 670  (0)
 671  CT (1)
 672  (0)
 673  (0)
 674  CT (1)
 675  (0)
 676  (0)
 677  (0)
 678  AG (1)
 679  (0)
 680  CT (1)
 681  AG (1)
 682  CT (1)
 683  CT (1)
 684  TC CT (2)
 685  (0)
 686  AC (1)
 687  AG (1)
 688  (0)
 689  CG (1)
 690  CT (1)
 691  (0)
 692  AG (1)
 693  (0)
 694  (0)
 695  TC (1)
 696  TC (1)
 697  (0)
 698  (0)
 699  TC CT (2)
 700  (0)
 701  (0)
 702  (0)
 703  (0)
 704  TC (1)
 705  (0)
 706  CT (1)
 707  (0)
 708  (0)
 709  (0)
 710  CT (1)
 711  (0)
 712  (0)
 713  TC (1)
 714  AC (1)
 715  CT (1)
 716  TC CA CT (3)
 717  GA (1)
 718  (0)
 719  CT (1)
 720  (0)
 721  (0)
 722  (0)
 723  CT (1)
 724  (0)
 725  CT (1)
 726  AG (1)
 727  (0)
 728  TC (1)
 729  (0)
 730  (0)
 731  CT (1)
 732  (0)
 733  (0)
 734  CT (1)
 735  (0)
 736  (0)
 737  CT (1)
 738  (0)
 739  (0)
 740  (0)
 741  (0)
 742  (0)
 743  AG (1)
 744  (0)
 745  AG (1)
 746  (0)
 747  TC (1)
 748  CT (1)
 749  (0)
 750  (0)
 751  (0)
 752  CT (1)
 753  (0)
 754  (0)
 755  CG (1)
 756  (0)
 757  (0)
 758  CT (1)
 759  (0)
 760  (0)
 761  TC TC (2)
 762  (0)
 763  (0)
 764  AG (1)
 765  (0)
 766  (0)
 767  (0)
 768  AT (1)
 769  CT (1)
 770  CT GC (2)
 771  AG (1)
 772  CT (1)
 773  CT (1)
 774  GA AG (2)
 775  (0)
 776  CT (1)
 777  (0)
 778  (0)
 779  AG AC (2)
 780  (0)
 781  (0)
 782  CT (1)
 783  AG (1)
 784  (0)
 785  (0)
 786  (0)
 787  (0)
 788  (0)
 789  (0)
 790  TC (1)
 791  CT CT CA (3)
 792  (0)
 793  (0)
 794  CT (1)
 795  (0)
 796  (0)
 797  CT (1)
 798  (0)
 799  (0)
 800  CT CT CA (3)
 801  TA (1)
 802  (0)
 803  CT (1)
 804  (0)
 805  (0)
 806  CA (1)
 807  (0)
 808  (0)
 809  (0)
 810  (0)
 811  CT (1)
 812  (0)
 813  (0)
 814  (0)
 815  (0)
 816  (0)
 817  (0)
 818  CT CT (2)
 819  AC (1)
 820  (0)
 821  AG AC AG (3)
 822  (0)
 823  (0)
 824  (0)
 825  CA (1)
 826  TC (1)
 827  (0)
 828  (0)
 829  AG (1)
 830  CA (1)
 831  (0)
 832  (0)
 833  (0)
 834  (0)
 835  (0)
 836  (0)
 837  AG (1)
 838  CT (1)
 839  CT (1)
 840  (0)
 841  (0)
 842  TC (1)
 843  AG (1)
 844  (0)
 845  CT (1)
 846  TA (1)
 847  (0)
 848  AG (1)
 849  (0)
 850  AG (1)
 851  (0)
 852  (0)
 853  (0)
 854  AG (1)
 855  CT (1)
 856  AG (1)
 857  (0)
 858  (0)
 859  (0)
 860  (0)
 861  AG (1)
 862  (0)
 863  AC AT (2)
 864  AG (1)
 865  (0)
 866  AC (1)
 867  (0)
 868  (0)
 869  (0)
 870  (0)
 871  (0)
 872  AG (1)
 873  (0)
 874  (0)
 875  AG (1)
 876  CA (1)
 877  TC (1)
 878  CT AC (2)
 879  CG (1)
 880  (0)
 881  AG (1)
 882  (0)
 883  (0)
 884  (0)
 885  (0)
 886  (0)
 887  CA (1)
 888  (0)
 889  (0)
 890  (0)
 891  (0)
 892  (0)
 893  (0)
 894  (0)
 895  (0)


(2) Joint reconstruction of ancestral sequences
(eqn. 2 in Yang et al. 1995 Genetics 141:1641-1650), using the algorithm of Pupko et al. (2000 Mol Biol Evol 17:890-896).

Reconstruction (prob.), listed by pattern
Pattern Freq   Data:

   1     202  AAAAA: AAA (1.000) GAA (0.000) AGA (0.000) AAG (0.000) GGA (0.000) CAA (0.000)  (total  1.000)
   2      71  GGGGG: GGG (1.000) AGG (0.000) GAG (0.000) GGA (0.000) AAG (0.000) GAA (0.000)  (total  1.000)
   3     184  CCCCC: CCC (0.999) TCC (0.001) CTC (0.000) CCT (0.000) TTC (0.000) CTT (0.000)  (total  1.000)
   4     156  TTTTT: TTT (0.999) CTT (0.001) TCT (0.000) TTC (0.000) CCT (0.000) TCC (0.000)  (total  1.000)
   5      24  CCCCT: CCC (0.958) TCC (0.041) TTC (0.001) TTT (0.000) CTC (0.000) CCT (0.000)  (total  1.000)
   6       5  CCCCA: CCC (0.989) ACC (0.007) TCC (0.003) GCC (0.000) TTC (0.000) CTC (0.000)  (total  1.000)
   7       2  GAGAA: AGG (0.624) AAA (0.196) GGG (0.171) AAG (0.005) AGA (0.003) GGA (0.001)  (total  1.000)
   8      12  TTTCC: CTT (0.763) TTT (0.223) CCT (0.012) CCC (0.001) ATT (0.000) CTC (0.000)  (total  1.000)
   9       8  CTTCC: CCC (0.452) CTT (0.411) TTT (0.120) CTC (0.008) CCT (0.007) TTC (0.002) TCC (0.000)  (total  1.000)
  10       2  AAGAG: AAA (0.600) GGA (0.318) GGG (0.047) GAA (0.024) AGA (0.010) AGG (0.001) AAG (0.000)  (total  1.000)
  11      10  TTTCT: TTT (0.937) CTT (0.062) CCT (0.001) CCC (0.000) TCT (0.000) TTC (0.000)  (total  1.000)
  12       2  TCTCC: CTT (0.500) CCC (0.338) TTT (0.146) CCT (0.008) CTC (0.006) TTC (0.002) TCC (0.000)  (total  1.000)
  13       8  CCTCC: CCC (0.975) CTC (0.016) TTC (0.005) CTT (0.003) TCC (0.001) TTT (0.001)  (total  1.000)
  14      13  AAAGA: AAA (0.927) GAA (0.071) GGA (0.001) GGG (0.000) AGA (0.000) CAA (0.000)  (total  1.000)
  15       4  CCTTC: CCC (0.598) TTC (0.296) TCC (0.049) TTT (0.045) CTC (0.010) CTT (0.002) CCT (0.000)  (total  1.000)
  16      14  CCCTC: CCC (0.923) TCC (0.076) TTC (0.002) TTT (0.000) CTC (0.000) CCT (0.000)  (total  1.000)
  17       1  TTTCA: TTT (0.507) CTT (0.453) ATT (0.032) CCT (0.007) CCC (0.001) GTT (0.000)  (total  1.000)
  18       4  AAAAC: AAA (0.992) CAA (0.006) GAA (0.001) TAA (0.000) GGA (0.000) AGA (0.000)  (total  1.000)
  19       1  CCACT: CCC (0.947) TCC (0.040) TTC (0.007) CAC (0.003) TTT (0.001) TAC (0.001) AAC (0.001)  (total  0.999)
  20       2  AAACC: CAA (0.939) AAA (0.050) TAA (0.007) CCA (0.003) GAA (0.000) CGA (0.000)  (total  1.000)
  21      15  AAAAG: AAA (0.961) GAA (0.038) GGA (0.001) GGG (0.000) AGA (0.000) AAG (0.000)  (total  1.000)
  22       1  AAAAT: AAA (0.995) TAA (0.003) CAA (0.002) GAA (0.000) AGA (0.000) AAG (0.000)  (total  1.000)
  23      11  CTCCC: CCC (0.981) CCT (0.014) CTT (0.003) TTT (0.001) TCC (0.001) CTC (0.000)  (total  1.000)
  24       3  CCAAA: AAC (0.942) ACC (0.030) AAA (0.024) CCC (0.001) AAT (0.001) GAC (0.000)  (total  0.999)
  25       4  TCCCT: CCC (0.870) TTT (0.066) TCC (0.037) CCT (0.021) CTT (0.004) TCT (0.001)  (total  0.999)
  26       3  TTCCC: CCT (0.718) CTT (0.151) CCC (0.086) TTT (0.044) TCT (0.001) TCC (0.000)  (total  1.000)
  27       3  TCTTT: TTT (0.986) TTC (0.011) TCC (0.002) CTT (0.001) CCC (0.000) TCT (0.000)  (total  1.000)
  28       1  AAACG: AAA (0.802) GAA (0.158) CAA (0.036) GGA (0.003) GGG (0.000) TAA (0.000)  (total  1.000)
  29       3  TTCTC: TTT (0.812) CCT (0.132) CTT (0.028) CCC (0.016) TCT (0.011) TCC (0.001) TTC (0.000)  (total  1.000)
  30       4  AAACA: AAA (0.986) CAA (0.012) GAA (0.002) TAA (0.000) CCA (0.000) GGA (0.000)  (total  1.000)
  31       8  TCCCC: CCC (0.970) CCT (0.023) CTT (0.005) TTT (0.001) TCC (0.001) CTC (0.000)  (total  1.000)
  32       3  TTCCT: TTT (0.699) CCT (0.219) CTT (0.046) CCC (0.026) TCT (0.009) TCC (0.001) TTC (0.000)  (total  1.000)
  33       1  TCTTC: TTT (0.933) CTT (0.032) CCC (0.022) TTC (0.011) TCC (0.002) CCT (0.001)  (total  1.000)
  34       4  CCCCG: CCC (0.993) GCC (0.004) ACC (0.002) TCC (0.001) CTC (0.000) CCT (0.000)  (total  1.000)
  35       9  TTTTC: TTT (0.966) CTT (0.033) CCT (0.001) CCC (0.000) TCT (0.000) TTC (0.000)  (total  1.000)
  36       9  AAGAA: AAA (0.976) AGA (0.016) GGA (0.004) AGG (0.002) GGG (0.001) GAA (0.000)  (total  1.000)
  37       2  GGGAG: GGG (0.970) AGG (0.030) AAG (0.000) AAA (0.000) GAG (0.000) GGA (0.000)  (total  1.000)
  38       3  TTCTT: TTT (0.981) TCT (0.013) CCT (0.003) TCC (0.002) CTT (0.001) CCC (0.000)  (total  1.000)
  39       5  CCCAC: CCC (0.981) ACC (0.014) TCC (0.004) GCC (0.000) TTC (0.000) CTC (0.000)  (total  1.000)
  40       1  ACATC: CAA (0.340) TAA (0.266) CCC (0.263) AAA (0.095) TCC (0.022) TTT (0.007) TTC (0.004) CCA (0.001) CAC (0.001)  (total  0.998)
  41       7  GAAAA: AAA (0.971) AAG (0.023) AGG (0.005) GGG (0.001) GAA (0.000) AGA (0.000)  (total  1.000)
  42       1  AGAAT: AAA (0.977) AAG (0.014) TAA (0.003) AGG (0.003) CAA (0.002) GGG (0.001)  (total  0.999)
  43       3  GGAAA: AAG (0.760) AGG (0.156) GGG (0.043) AAA (0.041) GAG (0.000) GAA (0.000)  (total  1.000)
  44       5  GGGAA: AGG (0.780) GGG (0.214) AAG (0.006) AAA (0.000) CGG (0.000) AGA (0.000)  (total  1.000)
  45       3  AAAGG: GAA (0.882) AAA (0.098) GGA (0.018) GGG (0.003) GAG (0.000) CAA (0.000)  (total  1.000)
  46       1  ATAAT: AAA (0.990) TAA (0.003) TTT (0.003) CAA (0.002) AAT (0.001) GAA (0.000)  (total  0.999)
  47       1  GAAAC: AAA (0.961) AAG (0.022) CAA (0.006) GGG (0.005) AGG (0.005) GAA (0.001) CGG (0.000)  (total  1.000)
  48       1  TTTTG: TTT (0.966) CTT (0.030) ATT (0.003) CCT (0.000) GTT (0.000) CCC (0.000)  (total  1.000)
  49       4  AAATA: AAA (0.990) TAA (0.007) CAA (0.002) GAA (0.000) AGA (0.000) AAG (0.000)  (total  1.000)
  50       1  TCCTC: CCC (0.793) TTT (0.116) TCC (0.065) CCT (0.019) CTT (0.004) TCT (0.002) TTC (0.001) CTC (0.000)  (total  1.000)
  51       2  CCCAA: ACC (0.950) CCC (0.043) AAC (0.003) GCC (0.003) TCC (0.001) ATC (0.001)  (total  1.000)
  52       3  CCTCT: CCC (0.737) TTC (0.189) TCC (0.031) TTT (0.029) CTC (0.012) CTT (0.002) CCT (0.000)  (total  1.000)
  53       2  CCTCA: CCC (0.949) TTC (0.018) CTC (0.016) ACC (0.007) TCC (0.003) TTT (0.003) CTT (0.002) ATC (0.001) AAC (0.000)  (total  1.000)
  54       1  TCTAC: TTT (0.448) CTT (0.295) CCC (0.199) ATT (0.041) TTC (0.005) CCT (0.005) CTC (0.003) ACC (0.003) TCC (0.001)  (total  0.999)
  55       1  AGGAA: AGG (0.554) AAA (0.283) GGG (0.152) AGA (0.005) AAG (0.004) GGA (0.001) GAA (0.000)  (total  1.000)
  56       4  AGAAA: AAA (0.982) AAG (0.014) AGG (0.003) GGG (0.001) GAA (0.000) AGA (0.000)  (total  1.000)
  57       1  TTCAA: ATT (0.600) ACT (0.298) ACC (0.036) AAT (0.030) TTT (0.016) CCT (0.013) CTT (0.003) CCC (0.002) GCT (0.001)  (total  0.999)
  58       2  AACAA: AAA (0.997) ACA (0.002) GAA (0.000) AGA (0.000) CCA (0.000) ACC (0.000)  (total  1.000)
  59       3  CTCCA: CCC (0.969) CCT (0.014) ACC (0.007) TTT (0.003) TCC (0.003) CTT (0.003) ATT (0.000)  (total  1.000)
  60       2  CTCTC: CCC (0.839) TTT (0.075) TCC (0.069) CCT (0.012) CTT (0.003) TTC (0.001) TCT (0.001) CTC (0.000)  (total  1.000)
  61       1  GAAGA: AAA (0.712) GGG (0.211) GAA (0.055) AAG (0.017) AGG (0.003) GAG (0.001) GGA (0.001) AGA (0.000)  (total  1.000)
  62       2  CTCCT: CCC (0.902) TTT (0.042) TCC (0.038) CCT (0.013) CTT (0.003) TTC (0.001)  (total  0.999)
  63       1  ATAAA: AAA (0.998) AAT (0.001) GAA (0.000) AAC (0.000) AGA (0.000) GGA (0.000)  (total  1.000)
  64       1  TTTTA: TTT (0.988) CTT (0.009) ATT (0.003) CCT (0.000) TCT (0.000) TTC (0.000)  (total  1.000)
  65       1  CTCTT: TTT (0.463) TCC (0.422) CCC (0.099) TTC (0.009) TCT (0.006) CCT (0.001) CTT (0.000)  (total  1.000)
  66       1  GAGGC: GGG (0.988) GGA (0.005) AGG (0.004) AAA (0.001) CGG (0.001) GAA (0.000)  (total  1.000)
  67       1  TAAGA: AAA (0.925) GAA (0.071) AAT (0.002) GGA (0.001) GGG (0.000) AAC (0.000)  (total  1.000)
  68       3  CCCTT: TCC (0.794) CCC (0.187) TTC (0.016) TTT (0.002) TCT (0.000) ACC (0.000)  (total  1.000)
  69       1  GGGCG: GGG (0.991) AGG (0.006) CGG (0.003) AAG (0.000) GAG (0.000) GGA (0.000)  (total  1.000)
  70       1  GAAAT: AAA (0.966) AAG (0.022) AGG (0.005) TAA (0.003) CAA (0.002) GGG (0.001) GAA (0.000)  (total  1.000)
  71       1  TCCTT: TTT (0.582) TCC (0.325) CCC (0.076) TCT (0.008) TTC (0.007) CCT (0.002) CTT (0.000)  (total  1.000)
  72       1  CCTGA: ACC (0.460) GCC (0.321) CCC (0.103) ATC (0.074) AAC (0.014) ATT (0.011) GTC (0.008) TTC (0.002) CTC (0.002) GTT (0.001) GAC (0.001) TCC (0.000)  (total  0.998)
  73       1  AGACA: AAA (0.965) AAG (0.014) CAA (0.012) GGG (0.004) AGG (0.003) GAA (0.002) TAA (0.000)  (total  0.999)
  74       1  CTTTT: TTT (0.977) TTC (0.018) TCC (0.003) CCC (0.001) CTT (0.001) TCT (0.000)  (total  1.000)
  75       1  TCTCA: TTT (0.384) CTT (0.343) CCC (0.232) ATT (0.024) CCT (0.006) TTC (0.004) CTC (0.004) ACC (0.002) TCC (0.001)  (total  0.999)
  76       1  TTTAA: ATT (0.965) TTT (0.027) CTT (0.005) ACT (0.002) AAT (0.001) GTT (0.000)  (total  1.000)
  77       1  CCTGG: GCC (0.945) GTC (0.023) ACC (0.012) CCC (0.009) GTT (0.003) GAC (0.003) ATC (0.002) AAC (0.000)  (total  0.997)
  78       1  AGAAC: AAA (0.973) AAG (0.014) CAA (0.006) GGG (0.003) AGG (0.003) GAA (0.001) TAA (0.000)  (total  1.000)
  79       1  TCCTA: CCC (0.510) TTT (0.287) TCC (0.160) ACC (0.019) CCT (0.012) TCT (0.004) TTC (0.003) CTT (0.003) ATT (0.001)  (total  0.999)
  80       1  CTCTA: CCC (0.579) TTT (0.200) TCC (0.182) ACC (0.022) CCT (0.008) TTC (0.004) TCT (0.003) CTT (0.002) ATT (0.001)  (total  0.999)
  81       2  TTTAT: TTT (0.981) CTT (0.012) ATT (0.007) CCT (0.000) TCT (0.000) TTC (0.000)  (total  1.000)
  82       1  GAACG: AAA (0.489) GGG (0.372) GAA (0.097) CAA (0.022) AAG (0.011) AGG (0.002) GAG (0.002) GGA (0.002) CGG (0.001)  (total  0.999)
  83       1  CAAAT: AAA (0.988) AAC (0.004) TAA (0.003) CCC (0.002) CAA (0.002) TCC (0.000)  (total  0.999)
  84       1  CCTTT: TTC (0.736) TCC (0.122) TTT (0.112) CCC (0.029) CTC (0.000) CTT (0.000)  (total  1.000)
  85       1  CCTAA: ACC (0.787) ATC (0.127) CCC (0.035) AAC (0.023) ATT (0.019) TTC (0.003) GCC (0.002) CTC (0.001)  (total  0.998)



List of extant and reconstructed sequences

     8    895

Human             AAGCTTCACC GGCGCAGTCA TTCTCATAAT CGCCCACGGA CTTACATCCT CATTACTATT CTGCCTAGCA AACTCAAACT ACGAACGCAC TCACAGTCGC ATCATAATCC TCTCTCAAGG ACTTCAAACT CTACTCCCAC TAATAGCTTT TTGATGACTT CTAGCAAGCC TCGCTAACCT CGCCTTACCC CCCACTATTA ACCTACTGGG AGAACTCTCT GTGCTAGTAA CCACGTTCTC CTGATCAAAT ATCACTCTCC TACTTACAGG ACTCAACATA CTAGTCACAG CCCTATACTC CCTCTACATA TTTACCACAA CACAATGGGG CTCACTCACC CACCACATTA ACAACATAAA ACCCTCATTC ACACGAGAAA ACACCCTCAT GTTCATACAC CTATCCCCCA TTCTCCTCCT ATCCCTCAAC CCCGACATCA TTACCGGGTT TTCCTCTTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA ACAGAGGCTT ACGACCCCTT ATTTACCGAG AAAGCTCACA AGAACTGCTA ACTCATGCCC CATGTCTGAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GCCCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAA CCATGCACAC TACTATAACC ACCCTAACCC TGACTTCCCT AATTCCCCCC ATCCTTACCA CCCTCGTTAA CCCTAACAAA AAAAACTCAT ACCCCCATTA TGTAAAATCC ATTGTCGCAT CCACCTTTAT TATCAGTCTC TTCCCCACAA CAATATTCAT GTGCCTAGAC CAAGAAGTTA TTATCTCGAA CTGACACTGA GCCACAACCC AAACAACCCA GCTCTCCCTA AGCTT
Chimpanzee        AAGCTTCACC GGCGCAATTA TCCTCATAAT CGCCCACGGA CTTACATCCT CATTATTATT CTGCCTAGCA AACTCAAATT ATGAACGCAC CCACAGTCGC ATCATAATTC TCTCCCAAGG ACTTCAAACT CTACTCCCAC TAATAGCCTT TTGATGACTC CTAGCAAGCC TCGCTAACCT CGCCCTACCC CCTACCATTA ATCTCCTAGG GGAACTCTCC GTGCTAGTAA CCTCATTCTC CTGATCAAAT ACCACTCTCC TACTCACAGG ATTCAACATA CTAATCACAG CCCTGTACTC CCTCTACATG TTTACCACAA CACAATGAGG CTCACTCACC CACCACATTA ATAACATAAA GCCCTCATTC ACACGAGAAA ATACTCTCAT ATTTTTACAC CTATCCCCCA TCCTCCTTCT ATCCCTCAAT CCTGATATCA TCACTGGATT CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA ACAGAGGCTC ACGACCCCTT ATTTACCGAG AAAGCTTATA AGAACTGCTA ATTCATATCC CATGCCTAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCCATCCG TTGGTCTTAG GCCCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAA CCATGTATAC TACCATAACC ACCTTAACCC TAACTCCCTT AATTCTCCCC ATCCTCACCA CCCTCATTAA CCCTAACAAA AAAAACTCAT ATCCCCATTA TGTGAAATCC ATTATCGCGT CCACCTTTAT CATTAGCCTT TTCCCCACAA CAATATTCAT ATGCCTAGAC CAAGAAGCTA TTATCTCAAA CTGGCACTGA GCAACAACCC AAACAACCCA GCTCTCCCTA AGCTT
Gorilla           AAGCTTCACC GGCGCAGTTG TTCTTATAAT TGCCCACGGA CTTACATCAT CATTATTATT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC ATCATAATTC TCTCTCAAGG ACTCCAAACC CTACTCCCAC TAATAGCCCT TTGATGACTT CTGGCAAGCC TCGCCAACCT CGCCTTACCC CCCACCATTA ACCTACTAGG AGAGCTCTCC GTACTAGTAA CCACATTCTC CTGATCAAAC ACCACCCTTT TACTTACAGG ATCTAACATA CTAATTACAG CCCTGTACTC CCTTTATATA TTTACCACAA CACAATGAGG CCCACTCACA CACCACATCA CCAACATAAA ACCCTCATTT ACACGAGAAA ACATCCTCAT ATTCATGCAC CTATCCCCCA TCCTCCTCCT ATCCCTCAAC CCCGATATTA TCACCGGGTT CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGATA ACAGAGGCTC ACAACCCCTT ATTTACCGAG AAAGCTCGTA AGAGCTGCTA ACTCATACCC CGTGCTTAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GACCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAA CTATGTACGC TACCATAACC ACCTTAGCCC TAACTTCCTT AATTCCCCCT ATCCTTACCA CCTTCATCAA TCCTAACAAA AAAAGCTCAT ACCCCCATTA CGTAAAATCT ATCGTCGCAT CCACCTTTAT CATCAGCCTC TTCCCCACAA CAATATTTCT ATGCCTAGAC CAAGAAGCTA TTATCTCAAG CTGACACTGA GCAACAACCC AAACAATTCA ACTCTCCCTA AGCTT
Orangutan         AAGCTTCACC GGCGCAACCA CCCTCATGAT TGCCCATGGA CTCACATCCT CCCTACTGTT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC ATCATAATCC TCTCTCAAGG CCTTCAAACT CTACTCCCCC TAATAGCCCT CTGATGACTT CTAGCAAGCC TCACTAACCT TGCCCTACCA CCCACCATCA ACCTTCTAGG AGAACTCTCC GTACTAATAG CCATATTCTC TTGATCTAAC ATCACCATCC TACTAACAGG ACTCAACATA CTAATCACAA CCCTATACTC TCTCTATATA TTCACCACAA CACAACGAGG TACACCCACA CACCACATCA ACAACATAAA ACCTTCTTTC ACACGCGAAA ATACCCTCAT GCTCATACAC CTATCCCCCA TCCTCCTCTT ATCCCTCAAC CCCAGCATCA TCGCTGGGTT CGCCTACTGT AAATATAGTT TAACCAAAAC ATTAGATTGT GAATCTAATA ATAGGGCCCC ACAACCCCTT ATTTACCGAG AAAGCTCACA AGAACTGCTA ACTCTCACTC CATGTGTAAC AACATGGCTT TCTCAGCTTT TAAAGGATAA CAGCTATCCC TTGGTCTTAG GATCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAACAG CCATGTTTAC CACCATAACT GCCCTCACCT TAACTTCCCT AATCCCCCCC ATTACCGCTA CCCTCATTAA CCCCAACAAA AAAAACCCAT ACCCCCACTA TGTAAAAACG GCCATCGCAT CCGCCTTTAC TATCAGCCTT ATCCCAACAA CAATATTTAT CTGCCTAGGA CAAGAAACCA TCGTCACAAA CTGATGCTGA ACAACCACCC AGACACTACA ACTCTCACTA AGCTT
Gibbon            AAGCTTTACA GGTGCAACCG TCCTCATAAT CGCCCACGGA CTAACCTCTT CCCTGCTATT CTGCCTTGCA AACTCAAACT ACGAACGAAC TCACAGCCGC ATCATAATCC TATCTCGAGG GCTCCAAGCC TTACTCCCAC TGATAGCCTT CTGATGACTC GCAGCAAGCC TCGCTAACCT CGCCCTACCC CCCACTATTA ACCTCCTAGG TGAACTCTTC GTACTAATGG CCTCCTTCTC CTGGGCAAAC ACTACTATTA CACTCACCGG GCTCAACGTA CTAATCACGG CCCTATACTC CCTTTACATA TTTATCATAA CACAACGAGG CACACTTACA CACCACATTA AAAACATAAA ACCCTCACTC ACACGAGAAA ACATATTAAT ACTTATGCAC CTCTTCCCCC TCCTCCTCCT AACCCTCAAC CCTAACATCA TTACTGGCTT TACTCCCTGT AAACATAGTT TAATCAAAAC ATTAGATTGT GAATCTAACA ATAGAGGCTC GAAACCTCTT GCTTACCGAG AAAGCCCACA AGAACTGCTA ACTCACTACC CATGTATAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GACCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAG CAATGTACAC CACCATAGCC ATTCTAACGC TAACCTCCCT AATTCCCCCC ATTACAGCCA CCCTTATTAA CCCCAATAAA AAGAACTTAT ACCCGCACTA CGTAAAAATG ACCATTGCCT CTACCTTTAT AATCAGCCTA TTTCCCACAA TAATATTCAT GTGCACAGAC CAAGAAACCA TTATTTCAAA CTGACACTGA ACTGCAACCC AAACGCTAGA ACTCTCCCTA AGCTT
node #6           AAGCTTCACC GGCGCAACCA TCCTCATAAT CGCCCACGGA CTTACATCCT CCCTACTATT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC ATCATAATCC TCTCTCAAGG ACTTCAAACT CTACTCCCAC TAATAGCCTT CTGATGACTT CTAGCAAGCC TCGCTAACCT CGCCCTACCC CCCACCATTA ACCTCCTAGG AGAACTCTCC GTACTAATAG CCACATTCTC CTGATCAAAC ACCACTATCC TACTTACAGG ACTCAACATA CTAATCACAG CCCTATACTC CCTCTACATA TTTACCACAA CACAACGAGG CACACTCACA CACCACATTA ACAACATAAA ACCCTCATTC ACACGAGAAA ACACCCTCAT ACTCATACAC CTATCCCCCA TCCTCCTCCT ATCCCTCAAC CCCAACATCA TCACTGGGTT CACCTCCTGT AAATATAGTT TAACCAAAAC ATTAGATTGT GAATCTAACA ATAGAGGCTC ACAACCCCTT ATTTACCGAG AAAGCTCACA AGAACTGCTA ACTCACACCC CATGTATAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GACCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAG CCATGTACAC CACCATAACC ACCCTAACCC TAACTTCCCT AATTCCCCCC ATTACTGCCA CCCTCATTAA CCCCAACAAA AAAAACTCAT ACCCCCACTA TGTAAAAACG ACCATCGCAT CCACCTTTAT CATCAGCCTC TTCCCCACAA CAATATTCAT ATGCCTAGAC CAAGAAACCA TTATCTCAAA CTGACACTGA ACAACAACCC AAACACTACA ACTCTCCCTA AGCTT
node #7           AAGCTTCACC GGCGCAGTCA TTCTCATAAT CGCCCACGGA CTTACATCCT CATTACTATT CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC ATCATAATCC TCTCTCAAGG ACTTCAAACT CTACTCCCAC TAATAGCCTT TTGATGACTT CTAGCAAGCC TCGCTAACCT CGCCTTACCC CCCACCATTA ACCTACTAGG AGAACTCTCC GTACTAGTAA CCACATTCTC CTGATCAAAC ACCACTCTCC TACTTACAGG ACTCAACATA CTAATCACAG CCCTGTACTC CCTCTACATA TTTACCACAA CACAATGAGG CTCACTCACA CACCACATTA ACAACATAAA ACCCTCATTC ACACGAGAAA ACACCCTCAT ATTCATACAC CTATCCCCCA TCCTCCTCCT ATCCCTCAAC CCCGACATCA TCACTGGGTT CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA ACAGAGGCTC ACAACCCCTT ATTTACCGAG AAAGCTCACA AGAACTGCTA ACTCATACCC CATGTCTAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GACCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAA CCATGTACAC TACCATAACC ACCCTAACCC TAACTTCCCT AATTCCCCCC ATCCTTACCA CCCTCATTAA CCCTAACAAA AAAAACTCAT ACCCCCATTA TGTAAAATCC ATCGTCGCAT CCACCTTTAT CATCAGCCTC TTCCCCACAA CAATATTCAT ATGCCTAGAC CAAGAAGCTA TTATCTCAAA CTGACACTGA GCAACAACCC AAACAATCCA ACTCTCCCTA AGCTT
node #8           AAGCTTCACC GGCGCAGTCA TTCTCATAAT CGCCCACGGA CTTACATCCT CATTACTATT CTGCCTAGCA AACTCAAACT ACGAACGCAC CCACAGTCGC ATCATAATCC TCTCTCAAGG ACTTCAAACT CTACTCCCAC TAATAGCCTT TTGATGACTT CTAGCAAGCC TCGCTAACCT CGCCTTACCC CCCACCATTA ACCTACTAGG AGAACTCTCC GTGCTAGTAA CCACATTCTC CTGATCAAAT ACCACTCTCC TACTTACAGG ACTCAACATA CTAATCACAG CCCTGTACTC CCTCTACATA TTTACCACAA CACAATGAGG CTCACTCACC CACCACATTA ACAACATAAA ACCCTCATTC ACACGAGAAA ACACCCTCAT ATTCATACAC CTATCCCCCA TCCTCCTCCT ATCCCTCAAC CCCGACATCA TCACTGGGTT CACCTCCTGT AAATATAGTT TAACCAAAAC ATCAGATTGT GAATCTGACA ACAGAGGCTC ACGACCCCTT ATTTACCGAG AAAGCTCACA AGAACTGCTA ACTCATACCC CATGTCTAAC AACATGGCTT TCTCAACTTT TAAAGGATAA CAGCTATCCA TTGGTCTTAG GCCCCAAAAA TTTTGGTGCA ACTCCAAATA AAAGTAATAA CCATGTACAC TACCATAACC ACCCTAACCC TAACTTCCCT AATTCCCCCC ATCCTTACCA CCCTCATTAA CCCTAACAAA AAAAACTCAT ACCCCCATTA TGTAAAATCC ATTGTCGCAT CCACCTTTAT CATCAGCCTC TTCCCCACAA CAATATTCAT ATGCCTAGAC CAAGAAGCTA TTATCTCAAA CTGACACTGA GCAACAACCC AAACAACCCA GCTCTCCCTA AGCTT


