Links to Recombinant sequence Analysis/detection Programs

NOTE, the headings on this page are meant as a guide only as the boundaries between these different programs can be difficult to define.

Methods that use phylogenetic trees to detect the presence of recombination:

Methods that use phylogenetic trees and require the presence of obviously mosaic sequences:

Methods that analyze patterns of sites:

Methods that use pairwise sequence comparisons:

Methods that do not require a multiple alignment:

Population genetics based methods:

Programs may be temporarily unavailable

Related information:



Maintained by Jun Fan and David Robertson. If you know of other programs that are not included here please e-mail us.
Last updated 22nd Feb 2007.