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PR01848

Identifier
U2AUXFACTOR  [View Relations]  [View Alignment]  
Accession
PR01848
No. of Motifs
6
Creation Date
14-MAR-2003  (UPDATE 05-JUN-2003)
Title
U2 auxiliary factor small subunit signature
Database References
Literature References
1. GAMA-CARVALHO, M., CARVALHO, M.P., KEHLENBACH, A., VALCARCEL, J. AND
CARMO-FONSECA, M.
Nucleocytoplasmic shuttling of heterodimeric splicing factor U2AF.
J.BIOL.CHEM. 276 13104-13112 (2001).
 
2. HATADA, I., SUGAMA, T. AND MUKAI, T.
A new imprinted gene cloned by a methylation-sensitive genome scanning
method.
NUCLEIC ACIDS RES. 21 5577-5582 (1993).
 
3. PEARSALL, R.S., SHIBATA, H., BROZOWSKA, A., YOSHINO, K., OKUDA, K.,
DEJONG, P.J., PLASS, C., CHAPMAN, V.M., HAYASHIZAKI, Y. AND HELD, W.A.
Absence of imprinting in U2AFBPL, a human homologue of the imprinted mouse
gene U2afbp-rs.
BIOCHEM.BIOPHYS.RES.COMMUN. 222 171-177 (1996).

Documentation
The U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) is a
heterodimeric splicing factor composed of a large and a small subunit. The
large U2AF subunit recognises the intronic polypyrimidine tract, a
sequence located adjacent to the 3' splice site that serves as an important
signal for both constitutive and regulated pre-mRNA splicing. The small
subunit interacts with the 3' splice site dinucleotide AG and is essential
for regulated splicing. The subunits shuttle continuously between the
nucleus and the cytoplasm via a mechanism that involves carrier receptors 
and is independent of binding to mRNA. Both subunits contain an arginine/
serine-rich (RS) domain, which acts as a nuclear localisation signal.
Furthermore, the presence of an RS domain on either subunit is sufficient 
to trigger the nucleocytoplasmic import of the heterodimeric complex [1].
 
The human form of the U2 auxilliary factor small subunit, hU2AF35, contains
a degenerate RNA recognition motif (RRM) and a C-terminal RS domain. The
murine form has been shown to be genomically imprinted with monoallelic
expression from the paternal allele [2]. However, this is not the case in
humans [3].
 
U2AUXFACTOR is a 6-element fingerprint that provides a signature for the U2
auxiliary factor small subunit proteins. The fingerprint was derived from an
initial alignment of 17 sequences: the motifs were drawn from the C-terminal
portion of the alignment, motifs 2-5 spanning the RNA-binding domain. Two
iterations on SPTR40_20f were required to reach convergence, at which point
a true set comprising 22 sequences was identified. A single partial match 
was also found, a human hypothetical 22.0kDa protein that matches motifs
1 and 4.
Summary Information
  22 codes involving  6 elements
0 codes involving 5 elements
0 codes involving 4 elements
0 codes involving 3 elements
1 codes involving 2 elements
Composite Feature Index
6222222222222
5000000
4000000
3000000
2100100
123456
True Positives
Q945S0        Q945S1        Q98SE2        Q99L29        
Q9FMY5 Q9N6L5 Q9S709 Q9SY74
Q9U2U0 Q9VR26 Q9W6Q9 Q9YHU4
Q9ZQW7 Q9ZQW8 Q9ZQW9 U2AG_DROME
U2AG_HUMAN U2AG_SCHPO U2R1_HUMAN U2R1_MOUSE
U2R2_HUMAN U2R2_MOUSE
True Positive Partials
Codes involving 2 elements
Q8WU68
Sequence Titles
Q945S0      U2 AUXILIARY FACTOR SMALL SUBUNIT - Arabidopsis thaliana (Mouse-ear cress). 
Q945S1 U2 AUXILIARY FACTOR SMALL SUBUNIT - Arabidopsis thaliana (Mouse-ear cress).
Q98SE2 U2SNRNP AUXILIARY FACTOR SMALL SUBUNIT - Gallus gallus (Chicken).
Q99L29 SIMILAR TO RIKEN CDNA 2010107D16 GENE - Mus musculus (Mouse).
Q9FMY5 U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT - Arabidopsis thaliana (Mouse-ear cress).
Q9N6L5 U2AF23/25 SPLICEOSOME COMPONENT - Leishmania major.
Q9S709 T22C5.10 (PUTATIVE U2 SNRNP AUXILIARY FACTOR PROTEIN) - Arabidopsis thaliana (Mouse-ear cress).
Q9SY74 F14N23.20 - Arabidopsis thaliana (Mouse-ear cress).
Q9U2U0 Y116A8C.35 PROTEIN - Caenorhabditis elegans.
Q9VR26 CG3294 PROTEIN - Drosophila melanogaster (Fruit fly).
Q9W6Q9 U2 SMALL NUCLEAR RIBONUCLEOPROTEIN AUXILIARY FACTOR SUBUNIT-RELATED PROTEIN - Fugu rubripes (Japanese pufferfish) (Takifugu rubripes).
Q9YHU4 SPLICING FACTOR U2AF35 - Fugu rubripes (Japanese pufferfish) (Takifugu rubripes).
Q9ZQW7 U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT - Oryza sativa (Rice).
Q9ZQW8 U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT - Oryza sativa (Rice).
Q9ZQW9 U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT - Oryza sativa (Rice).
U2AG_DROME Splicing factor U2af 38 kDa subunit (U2 auxiliary factor 38 kDa subunit) (U2 SNRNP auxiliary factor small subunit) - Drosophila melanogaster (Fruit fly).
U2AG_HUMAN Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2 SNRNP auxiliary factor small subunit) - Homo sapiens (Human).
U2AG_SCHPO Splicing factor U2AF 23 kDa subunit (U2 auxiliary factor 23 kDa subunit) (U2 snRNP auxiliary factor small subunit) (U2AF23) - Schizosaccharomyces pombe (Fission yeast).
U2R1_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit related-protein 1 - Homo sapiens (Human).
U2R1_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit related-protein 1 (SP2) - Mus musculus (Mouse).
U2R2_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit related-protein 2 - Homo sapiens (Human).
U2R2_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit related-protein 2 - Mus musculus (Mouse).

Q8WU68 HYPOTHETICAL 22.0 KDA PROTEIN - Homo sapiens (Human).
Scan History
SPTR40_20f 2  100  NSINGLE    
Initial Motifs
Motif 1  width=20
Element Seqn Id St Int Rpt
CPFYFKIGACRHGDRCSRLH Q9FMY5 18 18 -
CPFYFKIGACRHGDRCSRLH Q99L29 18 18 -
CPFYFKIGACRHGDRCSRLH Q9ZQW7 18 18 -
CPFYFKIGACRHGDRCSRLH Q9ZQW8 18 18 -
CPFYFKIGACRHGDRCSRLH Q9S709 18 18 -
CPFYFKIGACRHGDRCSRLH Q9ZQW9 18 18 -
CPFYSKTGACRFGDRCSRKH U2R1_HUMAN 177 177 -
CPFYSKTGACRFGDRCSRKH U2R2_HUMAN 172 172 -
CPFYSKTGACRFGDRCSRKH U2R2_MOUSE 176 176 -
CPFYNKTGACRFGNRCSRKH U2R1_MOUSE 163 163 -
CPFFLKTGSCRFGDRCSRKH Q9W6Q9 174 174 -
CSFYYKIGACRHGERCSRKH U2AG_SCHPO 18 18 -
CSFYFKIGACRHGDRCSRIH U2AG_DROME 18 18 -
CSFFFKTGACRHGDKCSRAH Q9U2U0 26 26 -
CPFHLKTGACRFGQRCSRVH Q9SY74 274 274 -
CVFFSKMGACRHGDQCTKLH Q9N6L5 8 8 -
CEFFSRTNCCRYGHACTFNH Q9VR26 170 170 -

Motif 2 width=21
Element Seqn Id St Int Rpt
HNRPTISPTLLLSNMYQRPDM Q9FMY5 37 -1 -
HTKPSISPTLLLANMYQRPDM Q99L29 37 -1 -
HNKPSVSPTLLLSNMYLRPDM Q9ZQW7 37 -1 -
HNKPSVSPTLLLSNMYLRPDM Q9ZQW8 37 -1 -
HNRPTISPTLLLSNMYQRPDM Q9S709 37 -1 -
HNRPTVSPTIVLANMYQRPDM Q9ZQW9 37 -1 -
HNFPTSSPTLLIKSMFTTFGM U2R1_HUMAN 196 -1 -
HNFPTSSPTLLIKSMFTTFGM U2R2_HUMAN 191 -1 -
HNFPTSSPTLLIKGMFTTFGM U2R2_MOUSE 195 -1 -
HDFPTSSPTLLVKSMFTTFGM U2R1_MOUSE 182 -1 -
HVYPTASPTMMIRSMFKTFGM Q9W6Q9 193 -1 -
HVKPNFSQTILCPNMYKNPIH U2AG_SCHPO 37 -1 -
HNKPTFSQTVLLQNLYVNPQN U2AG_DROME 37 -1 -
HHTPTFSPTVVLKNFYHNPVV Q9U2U0 45 -1 -
HFYPNKSCTLLMKNMYNGPGI Q9SY74 293 -1 -
HYRPDTSPTVLFPLMYPNPHA Q9N6L5 27 -1 -
HRRPMLGRILLIRHFFNHSML Q9VR26 189 -1 -

Motif 3 width=16
Element Seqn Id St Int Rpt
QDHFEDFYEDIFEELN Q9FMY5 75 17 -
QQHFEDFYEDLFEELS Q99L29 75 17 -
QADFEDFYEDIFEELS Q9ZQW7 75 17 -
QADFEDFYEDIFEELS Q9ZQW8 75 17 -
QEHFEDFFEDLFEELG Q9S709 75 17 -
QEHFEDFYEDIYEELS Q9ZQW9 75 17 -
YQQFLDFYEDVLPEFK U2R1_HUMAN 238 21 -
YQQFLDFYEDVLPEFK U2R2_HUMAN 233 21 -
YQQFLDFYYDVLPEFK U2R2_MOUSE 237 21 -
YQQFLDFYHDVLPEFK U2R1_MOUSE 224 21 -
YESFLEFYHDVLPEFK Q9W6Q9 235 21 -
AEQFDAFYEDMFCEFS U2AG_SCHPO 70 12 -
QEHYDNFFEDVFVECE U2AG_DROME 77 19 -
QRYFDDFYEEVFVEME Q9U2U0 84 18 -
ELCYEEFYEDVHTEFL Q9SY74 345 31 -
KKHFEHFYKEVWRTFM Q9N6L5 66 18 -
RHDYDEFFNDVVEELR Q9VR26 233 23 -

Motif 4 width=23
Element Seqn Id St Int Rpt
NLADHMIGNVYVLFKEEDHAAAA Q9FMY5 103 12 -
NLADHMVGNVYVQFREEEHAGEA Q99L29 103 12 -
NFADHMIGNVYVQFREEDQAARA Q9ZQW7 103 12 -
NFADHMIGNVYVQFREEDQAARA Q9ZQW8 103 12 -
NLADHMIGNVYVQFKEEDQAAAA Q9S709 103 12 -
NLADHMIGNVYVQFREEEQAVAA Q9ZQW9 103 12 -
NLEPHLRGNVYVQYQSEEECQAA U2R1_HUMAN 266 12 -
NLEPHLRGNVYVQYQSEEECQAA U2R2_HUMAN 261 12 -
NLEPHLRGNVYVQYQSEEDCQAA U2R2_MOUSE 265 12 -
NLEPHLRGNVYVQYQSEEECQAA U2R1_MOUSE 252 12 -
NHEPHLRGNVYVQFETEEQCKEA Q9W6Q9 263 12 -
NVGDHLVGNVYVRFKYEESAQNA U2AG_SCHPO 98 12 -
NLGDHLVGNVYIKFRNEADAEKA U2AG_DROME 106 13 -
NIGEHMVGNVYVKFMKEEDAEKA Q9U2U0 113 13 -
NGSFHLKGNVYVHYRSLESAILA Q9SY74 408 47 -
NLGDHLLGNVYIRFEDPQVATRI Q9N6L5 94 12 -
NTLEHLRGHVFVEYTNERSALRA Q9VR26 261 12 -

Motif 5 width=25
Element Seqn Id St Int Rpt
QGRFYSGRPIIADFSPVTDFREATC Q9FMY5 130 4 -
SGRFYAGRPIIVDFSPVTDFREATC Q99L29 130 4 -
TGRYYSGRPIIVEFSPVSDFREATC Q9ZQW7 130 4 -
TGRYYSGRPIIVEFSPVSDFREATC Q9ZQW8 130 4 -
QGRFYSGRPIIADFSPVTDFREATC Q9S709 130 4 -
QGRFYSGRPIIVEYSPVTDFREATC Q9ZQW9 130 4 -
NGRWYAGRQLQCEFCPVTRWKMAIC U2R1_HUMAN 293 4 -
NGRWYAGRQLQCEFCPVTRWKMAIC U2R2_HUMAN 288 4 -
NGRWYAGRQLQCEFCPVTRWKMAIC U2R2_MOUSE 292 4 -
NGRWYAGRQLQCEFCPVTRWKVAIC U2R1_MOUSE 279 4 -
NGRWYAGRQLHCEMCPVTRWKNAIC Q9W6Q9 290 4 -
NSRWYSQRPVYAELSPVTDFREACC U2AG_SCHPO 125 4 -
NNRWFGGRPVYSELSPVTDFREACC U2AG_DROME 133 4 -
NNRWFNGQPIYAELCPVTDFRESRC Q9U2U0 140 4 -
NGRYFAGKQVNCEFVNISRWKVAIC Q9SY74 435 4 -
RGKKLNDIIVLPELSPVTNFAEACC Q9N6L5 121 4 -
QGRYYASKRLNVEFSNLRTWRGAVC Q9VR26 288 4 -

Motif 6 width=13
Element Seqn Id St Int Rpt
GGYCNFMHVKQIS Q9FMY5 165 10 -
GGYCNFMHLKKIS Q99L29 165 10 -
GGYCNFMHVKEIG Q9ZQW7 165 10 -
GGYCNFMHVKEIG Q9ZQW8 165 10 -
GGYCNFMHVKLVS Q9S709 165 10 -
GGYCNFMHVKQIG Q9ZQW9 165 10 -
GKHCNFLHVFRNP U2R1_HUMAN 328 10 -
GKHCNFLHVFRNP U2R2_HUMAN 323 10 -
GKHCNFLHVFRNP U2R2_MOUSE 327 10 -
GKHCNFLHVFRNP U2R1_MOUSE 314 10 -
GKHCNFLHVFRNP Q9W6Q9 325 10 -
GGLCNFMHAKKPS U2AG_SCHPO 160 10 -
SGFCNFMHLKPIS U2AG_DROME 168 10 -
GGFCNFMHLKAIS Q9U2U0 175 10 -
GSACNFIHCFRNP Q9SY74 473 13 -
GEQCNYLHIMKVS Q9N6L5 156 10 -
GNDCGYLHLFGNP Q9VR26 313 0 -
Final Motifs
Motif 1  width=20
Element Seqn Id St Int Rpt
CPFYFKIGACRHGDRCSRLH Q9FMY5 18 18 -
CPFYFKIGACRHGDRCSRLH Q99L29 18 18 -
CPFYFKIGACRHGDRCSRLH Q9ZQW7 18 18 -
CPFYFKIGACRHGDRCSRLH Q9ZQW8 18 18 -
CPFYFKIGACRHGDRCSRLH Q945S1 18 18 -
CPFYFKIGACRHGDRCSRLH Q9S709 18 18 -
CPFYFKIGACRHGDRCSRLH Q9ZQW9 18 18 -
CPFYFKIGACRHGDRCSRLH Q945S0 18 18 -
CPFYSKTGACRFGDRCSRKH U2R1_HUMAN 177 177 -
CPFYSKTGACRFGDRCSRKH U2R2_HUMAN 172 172 -
CPFYSKTGACRFGDRCSRKH U2R2_MOUSE 176 176 -
CPFYNKTGACRFGNRCSRKH U2R1_MOUSE 163 163 -
CPFFLKTGSCRFGDRCSRKH Q9W6Q9 174 174 -
CSFYYKIGACRHGERCSRKH U2AG_SCHPO 18 18 -
CSFYFKIGACRHGDRCSRIH U2AG_DROME 18 18 -
CSFFFKTGACRHGDKCSRAH Q9U2U0 26 26 -
CSFYFKIGACRHGDRCSRLH Q9YHU4 18 18 -
CSFYFKIGACRHGDRCSRLH Q98SE2 18 18 -
CSFYFKIGACRHGDRCSRLH U2AG_HUMAN 18 18 -
CPFHLKTGACRFGQRCSRVH Q9SY74 274 274 -
CVFFSKMGACRHGDQCTKLH Q9N6L5 8 8 -
CEFFSRTNCCRYGHACTFNH Q9VR26 170 170 -

Motif 2 width=21
Element Seqn Id St Int Rpt
HNRPTISPTLLLSNMYQRPDM Q9FMY5 37 -1 -
HTKPSISPTLLLANMYQRPDM Q99L29 37 -1 -
HNKPSVSPTLLLSNMYLRPDM Q9ZQW7 37 -1 -
HNKPSVSPTLLLSNMYLRPDM Q9ZQW8 37 -1 -
HNRPTISPTLLLSNMYQRPDM Q945S1 37 -1 -
HNRPTISPTLLLSNMYQRPDM Q9S709 37 -1 -
HNRPTVSPTIVLANMYQRPDM Q9ZQW9 37 -1 -
HNRPTISPTLLLSNMYQRPDM Q945S0 37 -1 -
HNFPTSSPTLLIKSMFTTFGM U2R1_HUMAN 196 -1 -
HNFPTSSPTLLIKSMFTTFGM U2R2_HUMAN 191 -1 -
HNFPTSSPTLLIKGMFTTFGM U2R2_MOUSE 195 -1 -
HDFPTSSPTLLVKSMFTTFGM U2R1_MOUSE 182 -1 -
HVYPTASPTMMIRSMFKTFGM Q9W6Q9 193 -1 -
HVKPNFSQTILCPNMYKNPIH U2AG_SCHPO 37 -1 -
HNKPTFSQTVLLQNLYVNPQN U2AG_DROME 37 -1 -
HHTPTFSPTVVLKNFYHNPVV Q9U2U0 45 -1 -
HNKPTFSQTIALLNIYRNPQN Q9YHU4 37 -1 -
HNKPTFSQTIALLNIYRNPQN Q98SE2 37 -1 -
HNKPTFSQTIALLNIYRNPQN U2AG_HUMAN 37 -1 -
HFYPNKSCTLLMKNMYNGPGI Q9SY74 293 -1 -
HYRPDTSPTVLFPLMYPNPHA Q9N6L5 27 -1 -
HRRPMLGRILLIRHFFNHSML Q9VR26 189 -1 -

Motif 3 width=16
Element Seqn Id St Int Rpt
QDHFEDFYEDIFEELN Q9FMY5 75 17 -
QQHFEDFYEDLFEELS Q99L29 75 17 -
QADFEDFYEDIFEELS Q9ZQW7 75 17 -
QADFEDFYEDIFEELS Q9ZQW8 75 17 -
QEHFEDFFEDLFEELG Q945S1 75 17 -
QEHFEDFFEDLFEELG Q9S709 75 17 -
QEHFEDFYEDIYEELS Q9ZQW9 75 17 -
QDHFEDFYEDIFEELN Q945S0 75 17 -
YQQFLDFYEDVLPEFK U2R1_HUMAN 238 21 -
YQQFLDFYEDVLPEFK U2R2_HUMAN 233 21 -
YQQFLDFYYDVLPEFK U2R2_MOUSE 237 21 -
YQQFLDFYHDVLPEFK U2R1_MOUSE 224 21 -
YESFLEFYHDVLPEFK Q9W6Q9 235 21 -
AEQFDAFYEDMFCEFS U2AG_SCHPO 70 12 -
QEHYDNFFEDVFVECE U2AG_DROME 77 19 -
QRYFDDFYEEVFVEME Q9U2U0 84 18 -
QEHFDEFFEEVFSEME Q9YHU4 75 17 -
QEHYDEFFEEVFTEME Q98SE2 75 17 -
QEHYDEFFEEVFTEME U2AG_HUMAN 75 17 -
ELCYEEFYEDVHTEFL Q9SY74 345 31 -
KKHFEHFYKEVWRTFM Q9N6L5 66 18 -
RHDYDEFFNDVVEELR Q9VR26 233 23 -

Motif 4 width=23
Element Seqn Id St Int Rpt
NLADHMIGNVYVLFKEEDHAAAA Q9FMY5 103 12 -
NLADHMVGNVYVQFREEEHAGEA Q99L29 103 12 -
NFADHMIGNVYVQFREEDQAARA Q9ZQW7 103 12 -
NFADHMIGNVYVQFREEDQAARA Q9ZQW8 103 12 -
NLADHMIGNVYVQFKEEDQAAAA Q945S1 103 12 -
NLADHMIGNVYVQFKEEDQAAAA Q9S709 103 12 -
NLADHMIGNVYVQFREEEQAVAA Q9ZQW9 103 12 -
NLADHMIGNVYVLFKEEDHAAAA Q945S0 103 12 -
NLEPHLRGNVYVQYQSEEECQAA U2R1_HUMAN 266 12 -
NLEPHLRGNVYVQYQSEEECQAA U2R2_HUMAN 261 12 -
NLEPHLRGNVYVQYQSEEDCQAA U2R2_MOUSE 265 12 -
NLEPHLRGNVYVQYQSEEECQAA U2R1_MOUSE 252 12 -
NHEPHLRGNVYVQFETEEQCKEA Q9W6Q9 263 12 -
NVGDHLVGNVYVRFKYEESAQNA U2AG_SCHPO 98 12 -
NLGDHLVGNVYIKFRNEADAEKA U2AG_DROME 106 13 -
NIGEHMVGNVYVKFMKEEDAEKA Q9U2U0 113 13 -
NLGDHLVGNVYVKFRNEEDAEKA Q9YHU4 104 13 -
NLGDHLVGNVYVKFRREEDAEKA Q98SE2 104 13 -
NLGDHLVGNVYVKFRREEDAEKA U2AG_HUMAN 104 13 -
NGSFHLKGNVYVHYRSLESAILA Q9SY74 408 47 -
NLGDHLLGNVYIRFEDPQVATRI Q9N6L5 94 12 -
NTLEHLRGHVFVEYTNERSALRA Q9VR26 261 12 -

Motif 5 width=25
Element Seqn Id St Int Rpt
QGRFYSGRPIIADFSPVTDFREATC Q9FMY5 130 4 -
SGRFYAGRPIIVDFSPVTDFREATC Q99L29 130 4 -
TGRYYSGRPIIVEFSPVSDFREATC Q9ZQW7 130 4 -
TGRYYSGRPIIVEFSPVSDFREATC Q9ZQW8 130 4 -
QGRFYSGRPIIADFSPVTDFREATC Q945S1 130 4 -
QGRFYSGRPIIADFSPVTDFREATC Q9S709 130 4 -
QGRFYSGRPIIVEYSPVTDFREATC Q9ZQW9 130 4 -
QGRFYSGRPIIADFSPVTDFREATC Q945S0 130 4 -
NGRWYAGRQLQCEFCPVTRWKMAIC U2R1_HUMAN 293 4 -
NGRWYAGRQLQCEFCPVTRWKMAIC U2R2_HUMAN 288 4 -
NGRWYAGRQLQCEFCPVTRWKMAIC U2R2_MOUSE 292 4 -
NGRWYAGRQLQCEFCPVTRWKVAIC U2R1_MOUSE 279 4 -
NGRWYAGRQLHCEMCPVTRWKNAIC Q9W6Q9 290 4 -
NSRWYSQRPVYAELSPVTDFREACC U2AG_SCHPO 125 4 -
NNRWFGGRPVYSELSPVTDFREACC U2AG_DROME 133 4 -
NNRWFNGQPIYAELCPVTDFRESRC Q9U2U0 140 4 -
NNRWFNGQPIHAELSPVTDFREACC Q9YHU4 131 4 -
NNRWFNGQPIHAELSPVTDFREACC Q98SE2 131 4 -
NNRWFNGQPIHAELSPVTDFREACC U2AG_HUMAN 131 4 -
NGRYFAGKQVNCEFVNISRWKVAIC Q9SY74 435 4 -
RGKKLNDIIVLPELSPVTNFAEACC Q9N6L5 121 4 -
QGRYYASKRLNVEFSNLRTWRGAVC Q9VR26 288 4 -

Motif 6 width=13
Element Seqn Id St Int Rpt
GGYCNFMHVKQIS Q9FMY5 165 10 -
GGYCNFMHLKKIS Q99L29 165 10 -
GGYCNFMHVKEIG Q9ZQW7 165 10 -
GGYCNFMHVKEIG Q9ZQW8 165 10 -
GGYCNFMHVKLVS Q945S1 165 10 -
GGYCNFMHVKLVS Q9S709 165 10 -
GGYCNFMHVKQIG Q9ZQW9 165 10 -
GGCCNFMHVKQIS Q945S0 165 10 -
GKHCNFLHVFRNP U2R1_HUMAN 328 10 -
GKHCNFLHVFRNP U2R2_HUMAN 323 10 -
GKHCNFLHVFRNP U2R2_MOUSE 327 10 -
GKHCNFLHVFRNP U2R1_MOUSE 314 10 -
GKHCNFLHVFRNP Q9W6Q9 325 10 -
GGLCNFMHAKKPS U2AG_SCHPO 160 10 -
SGFCNFMHLKPIS U2AG_DROME 168 10 -
GGFCNFMHLKAIS Q9U2U0 175 10 -
GGFCNFMHLKPIS Q9YHU4 166 10 -
GGFCNFMHLKPIS Q98SE2 166 10 -
GGFCNFMHLKPIS U2AG_HUMAN 166 10 -
GSACNFIHCFRNP Q9SY74 473 13 -
GEQCNYLHIMKVS Q9N6L5 156 10 -
GNDCGYLHLFGNP Q9VR26 313 0 -