SPRINT Home UMBER Home Contents Standard Search Advanced Search Relation Search

==SPRINT==> PRINTS View



  selected as


PR01840

Identifier
TATCFAMILY  [View Relations]  [View Alignment]  
Accession
PR01840
No. of Motifs
4
Creation Date
19-MAR-2003
Title
Bacterial Sec-independent translocation TatC protein family signature
Database References

PROSITE; PS01218 TATC
Literature References
1. SARGENT, F., BOGSCH, E.G., STANLEY, N.R., WEXLER, M., ROBINSON, C., 
BERKS, B.C. AND PALMER, T.
Overlapping functions of components of a bacterial Sec-independent protein
export pathway.
EMBO J. 17 3640-3650 (1998).
 
2. BERKS, B.C., SARGENT, F. AND PALMER, T.
The Tat protein export pathway.
MOL.MICROBIOL. 35 260-274 (2000).
 
3. SARGENT, F., STANLEY, N.R., BERKS, B.C. AND PALMER, T.
Sec-independent protein translocation in Escherichia coli.
J.BIOL.CHEM. 272 36073-36082 (1999).
 
4. BOGSCH, E.G., SARGENT, F., STANLEY, N.R.,BERKS, B.C., ROBINSON, C. AND 
PALMER T.
An essential component of a novel bacterial protein export system with
homologues in plastids and mitochondria.
J.BIOL.CHEM. 273 18003-18006 (1998). 

Documentation
Translocation of proteins across the two membranes of Gram-negative bacteria
can be effected via a number of routes. Most proteins marked for export
carry a secretion signal at their N-terminus, and are secreted by the
general secretory pathway; the signal peptide is cleaved as they pass
through the outer membrane. Other secretion systems include the type III
system found in a select group of Gram-negative plant and animal pathogens,
and the CagA system of Helicobacter pylori [1].
 
In some bacterial species, however, there exists a system that operates
independently of the Sec pathway [2]. It selectively translocates
periplasmic-bound molecules that are synthesised with, or are in close
association with, "partner" proteins bearing an (S/T)RRXFLK twin arginine
motif at the N-terminus. The pathway is thus termed the Twin-Arginine
Translocation (TAT) system. Surprisingly, the four elements that comprise
the TAT system are structurally and mechanistically related to a
pH-dependent import system in plant chloroplast thylakoid membranes [2]. The
gene products responsible for the Sec-independent pathway are TatA, TatB,
TatC and TatE. TatB is essential for the secretion of these specific
proteins, and forms a scaffold upon which TatC assembles in the membrane
[4]. TatC itself is essential for the final stage of protein translocation,
and TatC- mutants are unable to secrete a number of important proteins [4].
 
The predicted structure of TatC, based on sequence analyis, has six
transmembrane (TM) helices arranged such that the N- and C-termini of the
polypeptide chain are located at the cytoplasmic side of the membrane
[1]. In addition to being found in bacterial genomes, TatC homologues are
also encoded by certain plastid genomes, where they are involved in the 
thylakoid pH-dependent protein import system. They are also encoded in the
mitochodrial genomes of algae, higher plants and some protists.
 
TATCFAMILY is a 4-element fingerprint that provides a signature for the
bacterial Sec-independent translocation TatC protein family. The fingerprint
was derived from an initial alignment of 16 sequences: the motifs were drawn
from conserved regions spanning virtually the full alignment length - motifs
1-3 encode the N-termini of putative TM domains 1, 3 and 4, respectively; 
and motif 4 spans TM domain 5. Three iterations on SPTR40_20f were required
to reach convergence, at which point a true set comprising 53 sequences was
identified. Several partial matches were also found, all of which are family
members that fail to make significant matches with one or more motifs. 
Summary Information
  53 codes involving  4 elements
4 codes involving 3 elements
3 codes involving 2 elements
Composite Feature Index
453535353
30444
22310
1234
True Positives
O28760        Q8VQ52        Q8XV91        Q8YA05        
Q8YGS5 Q8YU98 Q8ZAM4 Q8ZWZ6
Q92ES8 Q92GA8 Q92Q23 Q94G17
Q974R1 Q97BT1 Q97UB0 Q97ZU3
Q98LC7 Q9A6T2 Q9AKS0 Q9AVE6
Q9CKD2 Q9F2H3 Q9HN36 Q9HUB3
Q9JVK2 Q9K0J7 Q9KVQ3 Q9L6M3
Q9PFU5 Q9RJ69 Q9RW63 Q9SJV5
Q9WWL0 Q9XFI4 TATC_AZOCH TATC_CAMJE
TATC_ECOLI TATC_HAEIN TATC_HELPJ TATC_HELPY
TATC_MYCLE TATC_MYCTU TATC_RICPR Y194_SYNY3
YC43_CYACA YC43_GUITH YC43_ODOSI YC43_PORPU
YC67_AQUAE YCBT_BACSU YDIJ_BACHD YDIJ_BACSU
YM16_RECAM
True Positive Partials
Codes involving 3 elements
Q99WN1 Q9AED6 Q9HIV2 Q9K626
Codes involving 2 elements
Q8W9S4 Q94Z17 Q9Y9Y5
Sequence Titles
O28760      HYPOTHETICAL PROTEIN AF1512 - Archaeoglobus fulgidus. 
Q8VQ52 TATC - Alcaligenes eutrophus (Ralstonia eutropha).
Q8XV91 PUTATIVE SEC-INDEPENDENT TRANSLOCASE PROTEIN TATC TRANSMEMBRANE - Ralstonia solanacearum (Pseudomonas solanacearum).
Q8YA05 HYPOTHETICAL PROTEIN LMO0361 - Listeria monocytogenes.
Q8YGS5 SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC - Brucella melitensis.
Q8YU98 HYPOTHETICAL PROTEIN ALL2456 - Anabaena sp. (strain PCC 7120).
Q8ZAM4 SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC - Yersinia pestis.
Q8ZWZ6 MEMBRANE PROTEIN (MTTB FAMILY) - Pyrobaculum aerophilum.
Q92ES8 HYPOTHETICAL PROTEIN LIN0380 - Listeria innocua.
Q92GA8 SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC - Rickettsia conorii.
Q92Q23 PUTATIVE SEC-INDEPENDENT TRANSLOCASE TRANSMEMBRANE PROTEIN - Rhizobium meliloti (Sinorhizobium meliloti).
Q94G17 TATC - Pisum sativum (Garden pea).
Q974R1 HYPOTHETICAL PROTEIN ST0598 - Sulfolobus tokodaii.
Q97BT1 HYPOTHETICAL PROTEIN TV0374 - Thermoplasma volcanium.
Q97UB0 TATC-LIKE PROTEIN, PUTATIVE (TATC-LIKE) - Sulfolobus solfataricus.
Q97ZU3 TATC PROTEIN (TATC) - Sulfolobus solfataricus.
Q98LC7 PROBABLE SEC-INDEPENDENT PROTEIN TRANSLOCASE COMPONENT - Rhizobium loti (Mesorhizobium loti).
Q9A6T2 MTTB FAMILY PROTEIN - Caulobacter crescentus.
Q9AKS0 TATC PROTEIN - Pseudomonas stutzeri (Pseudomonas perfectomarina).
Q9AVE6 OSTATC PROTEIN - Oryza sativa (Rice).
Q9CKD2 TATC - Pasteurella multocida.
Q9F2H3 TWIN ARGININE TRANSLOCATION PATHWAY - Streptomyces lividans.
Q9HN36 PROTEIN EXPORT - Halobacterium sp. (strain NRC-1).
Q9HUB3 TRANSPORT PROTEIN TATC - Pseudomonas aeruginosa.
Q9JVK2 PUTATIVE SEC-INDEPENDENT PROTEIN TRANSLOCASE COMPONENT - Neisseria meningitidis (serogroup A).
Q9K0J7 HYPOTHETICAL PROTEIN NMB0599 - Neisseria meningitidis (serogroup B).
Q9KVQ3 HYPOTHETICAL PROTEIN VC0088 - Vibrio cholerae.
Q9L6M3 PART OF SEC-INDEPENDENT PROTEIN EXPORT, INTEGRAL MEMBRANE PROTEIN (SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN) (90% IDENTITY TO E. COLI SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN (TATC), CONTAINS SIMILARITY TO PFAM FAMILY PF00902 (MTTB FAMILY), SCORE=147.4, E=2.6E-40, N=1) - Salmonella typhimurium, and Salmonella typhi.
Q9PFU5 SEC-INDEPENDENT PROTEIN TRANSLOCASE - Xylella fastidiosa.
Q9RJ69 HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN SCI41.15C - Streptomyces coelicolor.
Q9RW63 SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC, PUTATIVE - Deinococcus radiodurans.
Q9SJV5 PUTATIVE SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC - Arabidopsis thaliana (Mouse-ear cress).
Q9WWL0 YCF43 - Synechococcus sp. (strain PCC 7002) (Agmenellum quadruplicatum).
Q9XFI4 TATC (PUTATIVE SEC-INDEPENDENT PROTEIN TRANSLOCASE) (CPTATC) - Arabidopsis thaliana (Mouse-ear cress).
TATC_AZOCH Sec-independent protein translocase protein tatC homolog - Azotobacter chroococcum mcd 1.
TATC_CAMJE Sec-independent protein translocase protein tatC homolog - Campylobacter jejuni.
TATC_ECOLI Sec-independent protein translocase protein tatC - Escherichia coli, and Escherichia coli O157:H7.
TATC_HAEIN Sec-independent protein translocase protein tatC - Haemophilus influenzae.
TATC_HELPJ Sec-independent protein translocase protein tatC homolog - Helicobacter pylori J99 (Campylobacter pylori J99).
TATC_HELPY Sec-independent protein translocase protein tatC homolog - Helicobacter pylori (Campylobacter pylori).
TATC_MYCLE Sec-independent protein translocase protein tatC homolog - Mycobacterium leprae.
TATC_MYCTU Sec-independent protein translocase protein tatC homolog - Mycobacterium tuberculosis.
TATC_RICPR Sec-independent protein translocase protein tatC homolog - Rickettsia prowazekii.
Y194_SYNY3 Hypothetical 27.8 kDa protein sll0194 - Synechocystis sp. (strain PCC 6803).
YC43_CYACA Hypothetical 27.3 kDa protein ycf43 - Cyanidium caldarium.
YC43_GUITH Hypothetical 33.1 kDa protein ycf43 - Guillardia theta (Cryptomonas phi).
YC43_ODOSI Hypothetical 30.1 kDa protein ycf43 (ORF263) - Odontella sinensis.
YC43_PORPU Hypothetical 28.1 kDa protein ycf43 (ORF254) - Porphyra purpurea.
YC67_AQUAE Hypothetical protein AQ_1267 - Aquifex aeolicus.
YCBT_BACSU Hypothetical protein ycbT - Bacillus subtilis.
YDIJ_BACHD Hypothetical protein BH0553 - Bacillus halodurans.
YDIJ_BACSU Hypothetical protein ydiJ - Bacillus subtilis.
YM16_RECAM Hypothetical protein ymf16 - Reclinomonas americana.

Q99WN1 HYPOTHETICAL PROTEIN SAV0346 - Staphylococcus aureus (strain Mu50 / ATCC 700699), and Staphylococcus aureus (strain N315).
Q9AED6 PUTATIVE TATC PROTEIN - Legionella pneumophila.
Q9HIV2 CONSERVED HYPOTHETICAL MEMBRANE PROTEIN - Thermoplasma acidophilum.
Q9K626 HYPOTHETICAL PROTEIN BH3906 - Bacillus halodurans.

Q8W9S4 SECY-INDEPENDENT TRANSPORTER PROTEIN - Mesostigma viride.
Q94Z17 SECY-INDEPENDENT TRANSPORTER PROTEIN - Pylaiella littoralis.
Q9Y9Y5 HYPOTHETICAL PROTEIN APE2154 - Aeropyrum pernix.
Scan History
SPTR40_20f 3  100  NSINGLE    
Initial Motifs
Motif 1  width=28
Element Seqn Id St Int Rpt
PLITHLIELRKRLLNCIIAVIVIFLCLV TATC_ECOLI 8 8 -
PLVAHLTELRKRLLHCVVAIGLLFAGLF Q9AKS0 12 12 -
PLVAHLTELRSRLLRSVAAVLLIFAALF TATC_AZOCH 12 12 -
PLISHLIELRKRLLNCIITILVVFLVLV Q8ZAM4 8 8 -
PLISHLMELRDRLLRAIIFVAVVFCALV Q9CKD2 8 8 -
PLITHLVELRNRLLRCVICVVLVFVALV TATC_HAEIN 9 9 -
TFISHLVELRERIVKAGAGVLLIFLGLV Q8XV91 19 19 -
PLLEHLIELRRRLIWAILAFFVAFIFCF Q8YGS5 14 14 -
SIFDHLEELRERIFISVLGVGGSILGCF Q94G17 125 125 -
DLKPHLQELRKRLMVSVGTILVAFLGCF TATC_HELPY 4 4 -
SLVDHLTELRTRLLISLAAILVTTIFGF TATC_MYCTU 26 26 -
SLIDHLTELRTRLLISLAAIVVTTIFGF TATC_MYCLE 26 26 -
PLIEHLRELAYRLRRILIALAITFMIYF Q97ZU3 15 15 -
ELRPHLIELRKRLFISVACIVVMFIVCF TATC_CAMJE 4 4 -
PLLDHLRELAIRLRRIIAALAISFFFYF Q97UB0 20 20 -
PLGEHIEEMVTRLGIVVAIAALVSIVVF Q9HN36 113 113 -

Motif 2 width=19
Element Seqn Id St Int Rpt
PVILYQVWAFIAPALYKHE TATC_ECOLI 85 49 -
PVILHQIWGFIAPGLYKHE Q9AKS0 89 49 -
PVVLHQVWGFIAPGLYQHE TATC_AZOCH 89 49 -
PMTLYQVWAFIAPALYKHE Q8ZAM4 85 49 -
PYLLYQVWAFVAPALYQHE Q9CKD2 85 49 -
PYLLYQIWAFIAPALYQHE TATC_HAEIN 86 49 -
PWVLYQIWRFVAPGLYAHE Q8XV91 96 49 -
PVIAAQIYKFVAPGLYKHE Q8YGS5 97 55 -
PIILYEIIAFIIPGLTKEE Q94G17 199 46 -
PIIFWQLWLFIAPGLYKNE TATC_HELPY 75 43 -
PVWFYQLWAFITPGLYQRE TATC_MYCTU 119 65 -
PVWFYQLWAFITPGLYTKE TATC_MYCLE 119 65 -
PIIVREIWAFVAPGLYEHE Q97ZU3 123 80 -
PVIFWQFWKFVAPGLYDNE TATC_CAMJE 82 50 -
PLIIRETWAFLAPGLYKHE Q97UB0 127 79 -
PAFVYESYVFMRPGLYRNE Q9HN36 189 48 -

Motif 3 width=27
Element Seqn Id St Int Rpt
ERRLVVPLLVSSSLLFYIGMAFAYFVV TATC_ECOLI 103 -1 -
EKRIAVPLLVSSIFLFYAGMAFAYFVV Q9AKS0 107 -1 -
EKRIAMPLMASSVLLFYAGMAFAYFVV TATC_AZOCH 107 -1 -
ERRLMVPLLISSSLLFYLGMAFAYFVV Q8ZAM4 103 -1 -
EKRLIYPLLFSSTVLFYLGVAFAYYVV Q9CKD2 103 -1 -
EKRMIYPLLFSSTILFYCGVAFAYYIV TATC_HAEIN 104 -1 -
EKRMVLPLVVSSYVLFLCGVAFAYFLV Q8XV91 114 -1 -
ERTAFLPFLIASPILFLIGGALVYFFF Q8YGS5 115 -1 -
ERKFLGPIVLGSSVLFYAGITFSYLVL Q94G17 217 -1 -
EKKVILPFVFFGSGMFLIGAAFSYYVV TATC_HELPY 93 -1 -
ERRFAVAFVIPAAVLFVAGAVLAYLVL TATC_MYCTU 137 -1 -
ERRFTVAFVVPAAVLFAGGTVLAYLVL TATC_MYCLE 137 -1 -
EKKLFKSIIFPAFLLFALGSAFAYFLL Q97ZU3 141 -1 -
EKRLVVPFVSFASIMFAFGACFCYFVV TATC_CAMJE 100 -1 -
EKKIFKLTMIPAFLLFFSGSLFAFLIL Q97UB0 145 -1 -
ERRYYLASVPTSLVLSVVGVLFAFFIV Q9HN36 207 -1 -

Motif 4 width=29
Element Seqn Id St Int Rpt
YLSFVMALFMAFGVSFEVPVAIVLLCWMG TATC_ECOLI 154 24 -
YLDFVLTLFFAFGVAFEIPVATFLLIWVG Q9AKS0 158 24 -
YLDFVLTLFFAFGVAFEVPVATFLLIWVG TATC_AZOCH 158 24 -
YLDFVMALFMAFGISFEVPIAIILLCWAG Q8ZAM4 154 24 -
YLDFVLTIFLAFGVCFEVPVAIILLCWTG Q9CKD2 154 24 -
YLDFALALFLAFGVCFEVPIAIILLCWTG TATC_HAEIN 155 24 -
YLSFAMTTFLAFGITFEVPVVVIVLVRFG Q8XV91 166 25 -
YLSLIMTLIFAFGLVFQLPVVTSLMARVG Q8YGS5 172 30 -
YFEFVLVLMFSTGLSFQVPIIQLLLGQLG Q94G17 268 24 -
YVSFFTRLILGFGVAFELPVLAYFLAKVG TATC_HELPY 144 24 -
YFGFLLNLLVVFGVSFEFPLLIVMLNLAG TATC_MYCTU 187 23 -
YFGFLLNLLVVFGVSFEFPLLIVMLNIAG TATC_MYCLE 187 23 -
FVSTVMTLLIATGLSFELPLIMGGLTGVG Q97ZU3 195 27 -
YVDFFTKVVVAFGLAFEMPVIAFFFAKIG TATC_CAMJE 152 25 -
FISTTFLLMGSLGLAFEMPLIMIGLTHLR Q97UB0 199 27 -
TFNLLLLVMGYLAVVFQIPLFIMLAIMLG Q9HN36 258 24 -
Final Motifs
Motif 1  width=28
Element Seqn Id St Int Rpt
PLISHLLELRNRLLKAVAAVVVIFIGLI Q9KVQ3 9 9 -
PLVSHLTELRTRLLRSVAAIFLIFAGLF Q9HUB3 16 16 -
PLITHLIELRKRLLNCIVAVLLIFLALI Q9L6M3 8 8 -
PLITHLIELRKRLLNCIIAVIVIFLCLV TATC_ECOLI 8 8 -
PLVAHLTELRKRLLHCVVAIGLLFAGLF Q9AKS0 12 12 -
PLVAHLTELRSRLLRSVAAVLLIFAALF TATC_AZOCH 12 12 -
PLISHLIELRKRLLNCIITILVVFLVLV Q8ZAM4 8 8 -
PLISHLMELRDRLLRAIIFVAVVFCALV Q9CKD2 8 8 -
PLITHLVELRNRLLRCVICVVLVFVALV TATC_HAEIN 9 9 -
PLVEHLIELRRRLMWTVVGILVCFFGLM Q9JVK2 12 12 -
PLVEHLIELRRRLMWTVVGILVCFFGLM Q9K0J7 12 12 -
TIFDHLEELRERIFVSVLAVGAAILGCF Q9SJV5 99 99 -
TIFDHLEELRERIFVSVLAVGAAILGCF Q9XFI4 112 112 -
SLFDHLEELRQRIFYSLIAVAVGVVGCF Q8YU98 38 38 -
SLFDHLDELRTRIFLSLGAVLVGVVACF Y194_SYNY3 28 28 -
SLIEHLIELRARLIRMLIGLGLVVSALL Q9PFU5 12 12 -
PLIEHLIELRTRLMWAVGAFFVAFLVCF Q92Q23 11 11 -
PLTEHLRELRYRLIISIIAFLIGSGIAF YC67_AQUAE 2 2 -
SIFDHLEELRDRIFVSVLAVGAAILGCF Q9AVE6 131 131 -
TFISHLVELRQRLVKAVAGIILVFVSLV Q8VQ52 20 20 -
TFISHLVELRERIVKAGAGVLLIFLGLV Q8XV91 19 19 -
PLLEHLIELRRRLIWAILAFFVAFIFCF Q8YGS5 14 14 -
SIFDHLEELRERIFISVLGVGGSILGCF Q94G17 125 125 -
SLLEHIAELRKRLLIVALAFVVFFIAGF YDIJ_BACSU 10 10 -
PLIEHLIELRRRLIWSLGGFFVAFLVCF Q98LC7 17 17 -
PLLDHLIELRMRLIICVVAIALAFGVCF Q9A6T2 19 19 -
DLKPHLQELRKRLMVSVGTILVAFLGCF TATC_HELPY 4 4 -
SFFDHLEELRWRIFYSLISVVVGWVGCF Q9WWL0 20 20 -
DLKPHLQELRKRLMVSVGTILVAFLGCF TATC_HELPJ 4 4 -
SLVDHLTELRTRLLISLAAILVTTIFGF TATC_MYCTU 26 26 -
SLIDHLTELRTRLLISLAAIVVTTIFGF TATC_MYCLE 26 26 -
PLFDHLEELRRRLILSVVFLAVGMVIAF Q9RW63 23 23 -
PLIEHLRELAYRLRRILIALAITFMIYF Q97ZU3 15 15 -
SLTGHLKELRTRLLIILLSFFLAFFVGL Q8YA05 7 7 -
SLTGHLKELRTRLLIILLSFFLAFFVGL Q92ES8 7 7 -
PLAEHLRELRNRLAKALLAIVVVTVVAA Q9F2H3 2 2 -
PLAEHLRELRNRLAKALLAIVVVTVVAA Q9RJ69 17 17 -
ELRPHLIELRKRLFISVACIVVMFIVCF TATC_CAMJE 4 4 -
SLMDHIAELRRRILIIVVFFVIALVVGF YDIJ_BACHD 7 7 -
SITEHLEELRQRTVFVFIFFLLAATISF YC43_PORPU 28 28 -
PLIEHLKELGLRIRNMLIYLAIFFFIYF Q974R1 13 13 -
SIYEHLEELRQRSIESIVALLISMVVCS YC43_CYACA 13 13 -
SLAEHLEEIRQRAFWSFSVLTTMIISCI YC43_GUITH 58 58 -
HLIGHLEELRRRIIVTLAAFFLFLITAF YCBT_BACSU 7 7 -
PFSEHIEELKQRLFHTFWIILILTFISL YC43_ODOSI 37 37 -
SFQEHLLELKIRLLRIFTAFIIIFAICY Q92GA8 5 5 -
SFQEHLLEFKIRLLRIFTAFIIIFAICY TATC_RICPR 5 5 -
PLLDHLRELAIRLRRIIAALAISFFFYF Q97UB0 20 20 -
ELREHIEELRKRLLRVCIILIVAVSISY O28760 11 11 -
LLQKNIDELRLRVTRALIGFFVFFLIFF Q97BT1 8 8 -
PIWEHLAELGQRLKRVLIASLIVFLIMW Q8ZWZ6 12 12 -
PLGEHIEEMVTRLGIVVAIAALVSIVVF Q9HN36 113 113 -
PILTHLYEIRLRIIYLLYSIFLTCFCSY YM16_RECAM 6 6 -

Motif 2 width=19
Element Seqn Id St Int Rpt
PFILYQVWAFVAPGLYKHE Q9KVQ3 86 49 -
PVILAQVWGFIAPGLYKHE Q9HUB3 93 49 -
PVILYQVWAFIAPALYKHE Q9L6M3 85 49 -
PVILYQVWAFIAPALYKHE TATC_ECOLI 85 49 -
PVILHQIWGFIAPGLYKHE Q9AKS0 89 49 -
PVVLHQVWGFIAPGLYQHE TATC_AZOCH 89 49 -
PMTLYQVWAFIAPALYKHE Q8ZAM4 85 49 -
PYLLYQVWAFVAPALYQHE Q9CKD2 85 49 -
PYLLYQIWAFIAPALYQHE TATC_HAEIN 86 49 -
PHTLYQIWAFVAPALYQNE Q9JVK2 89 49 -
PHTLYQIWAFVAPALYQNE Q9K0J7 89 49 -
PVILYEIIAFVLPGLTRAE Q9SJV5 173 46 -
PVILYEIIAFVLPGLTRAE Q9XFI4 186 46 -
PFILYQIILFVLPGLTRRE Q8YU98 110 44 -
PFILYQIIQFVLPGLTRRE Y194_SYNY3 100 44 -
PWVLYQGWAFIAPGLYQRE Q9PFU5 89 49 -
PVIASQVYRFVAPGLYKNE Q92Q23 94 55 -
PVILYQFWRFIEPALYSHE YC67_AQUAE 78 48 -
PVILYEIIAFVLPGLTRDE Q9AVE6 205 46 -
PWVLYQVWQFVAPGLYQHE Q8VQ52 97 49 -
PWVLYQIWRFVAPGLYAHE Q8XV91 96 49 -
PVIAAQIYKFVAPGLYKHE Q8YGS5 97 55 -
PIILYEIIAFIIPGLTKEE Q94G17 199 46 -
PVILYQLWAFVSPGLYEKE YDIJ_BACSU 84 46 -
PLIATQIYKFIAPGLYKNE Q98LC7 100 55 -
PVIAWQLYRFVAPGLYKKE Q9A6T2 127 80 -
PIIFWQLWLFIAPGLYKNE TATC_HELPY 75 43 -
PFILYQIIQFVLPGLTRGE Q9WWL0 92 44 -
PIIFWQLWLFIAPGLYKNE TATC_HELPJ 75 43 -
PVWFYQLWAFITPGLYQRE TATC_MYCTU 119 65 -
PVWFYQLWAFITPGLYTKE TATC_MYCLE 119 65 -
PFIVWQIWAFIAPGLYPQE Q9RW63 103 52 -
PIIVREIWAFVAPGLYEHE Q97ZU3 123 80 -
PVILYQLWAFVKPGLHASE Q8YA05 81 46 -
PVILYQLWAFVKPGLHASE Q92ES8 81 46 -
PVWLYQLWAFVAPGLHRNE Q9F2H3 95 65 -
PVWLYQLWAFVAPGLHRNE Q9RJ69 110 65 -
PVIFWQFWKFVAPGLYDNE TATC_CAMJE 82 50 -
PIILYQLWAFVSPGLHENE YDIJ_BACHD 81 46 -
PFGVYQVILYILPGLTNKE YC43_PORPU 100 44 -
PLIFREFWAFVAPGLYEHE Q974R1 110 69 -
PIIFYEIIIFIIPGLTKKE YC43_CYACA 85 44 -
PFIVYQILLFVLPGMTKDE YC43_GUITH 130 44 -
PVAAYQLWRFVAPALTKTE YCBT_BACSU 78 43 -
PFAIGQIILFLLPGLTKKE YC43_ODOSI 109 44 -
PIIALECYLFISPGLHRHE Q92GA8 84 51 -
PIIALECYLFISPGLYRHE TATC_RICPR 83 50 -
PLIIRETWAFLAPGLYKHE Q97UB0 127 79 -
PYVIYELYLFAKPGLYEHE O28760 84 45 -
PIIVTEIGRFVGPGLRKQE Q97BT1 105 69 -
PYFVYEMWKYIKPALYPHE Q8ZWZ6 116 76 -
PAFVYESYVFMRPGLYRNE Q9HN36 189 48 -
PIFLYQIWSFLIPGFFLYE YM16_RECAM 77 43 -

Motif 3 width=27
Element Seqn Id St Int Rpt
ERRLIFPLLVSSSLLFYCGVAFAYFVV Q9KVQ3 104 -1 -
EKRVALPLLVSSIILFYAGMAFAYFLV Q9HUB3 111 -1 -
ERRLVVPLLVSSSLLFYIGMAFAYFVV Q9L6M3 103 -1 -
ERRLVVPLLVSSSLLFYIGMAFAYFVV TATC_ECOLI 103 -1 -
EKRIAVPLLVSSIFLFYAGMAFAYFVV Q9AKS0 107 -1 -
EKRIAMPLMASSVLLFYAGMAFAYFVV TATC_AZOCH 107 -1 -
ERRLMVPLLISSSLLFYLGMAFAYFVV Q8ZAM4 103 -1 -
EKRLIYPLLFSSTVLFYLGVAFAYYVV Q9CKD2 103 -1 -
EKRMIYPLLFSSTILFYCGVAFAYYIV TATC_HAEIN 104 -1 -
EKRLITPLVLSSVSLFFIGMAFAYFLV Q9JVK2 107 -1 -
EKRLITPLVLSSVSLFFIGMAFAYFLV Q9K0J7 107 -1 -
ERRFLGPIVFGSSLLFYAGLAFSYWVL Q9SJV5 191 -1 -
ERRFLGPIVFGSSLLFYAGLAFSYWVL Q9XFI4 204 -1 -
ERGLLGPIVLGSSVLFAGGLVFAYLLL Q8YU98 128 -1 -
ERRLLGPVVLGSSVLFFAGLGFAYYAL Y194_SYNY3 118 -1 -
EKRLALPLLISAVVLFYIGCAFAYFLV Q9PFU5 107 -1 -
ERAAFLPFLVASPLLFLLGGALVYFFF Q92Q23 112 -1 -
EKRAFIPLLLGSILLFMLGALFAYFIV YC67_AQUAE 96 -1 -
ERKFLGPIVLGSSVLFYLGIFFSYTVL Q9AVE6 223 -1 -
EKRLILPLVSSSYFLFLCGVAFAYFLV Q8VQ52 115 -1 -
EKRMVLPLVVSSYVLFLCGVAFAYFLV Q8XV91 114 -1 -
ERTAFLPFLIASPILFLIGGALVYFFF Q8YGS5 115 -1 -
ERKFLGPIVLGSSVLFYAGITFSYLVL Q94G17 217 -1 -
ERKVTLSYIPVSILLFLAGLSFSYYIL YDIJ_BACSU 102 -1 -
ERNAFLPFLIASPVLFLMGASLVYFFF Q98LC7 118 -1 -
ERNAFLPFLIASPVLFLMGASLVYYVM Q9A6T2 145 -1 -
EKKVILPFVFFGSGMFLIGAAFSYYVV TATC_HELPY 93 -1 -
ERRLLAPVVLGSGVLFFAGLAFAYVAL Q9WWL0 110 -1 -
EKKVILPFVFFGSGMFLMGAAFSYYVV TATC_HELPJ 93 -1 -
ERRFAVAFVIPAAVLFVAGAVLAYLVL TATC_MYCTU 137 -1 -
ERRFTVAFVVPAAVLFAGGTVLAYLVL TATC_MYCLE 137 -1 -
ERRWGLPFILGAGFAFAAGVVFGYKLV Q9RW63 121 -1 -
EKKLFKSIIFPAFLLFALGSAFAYFLL Q97ZU3 141 -1 -
EQRITLRYIPITFLLFLFGVVFSYLIT Q8YA05 99 -1 -
EQRITLRYIPITFLLFLCGVVFSYVIT Q92ES8 99 -1 -
EKKYAYAFVATGAPLFLAGAYFAYAVL Q9F2H3 113 -1 -
EKKYAYAFVATGAPLFLAGAYFAYAVL Q9RJ69 128 -1 -
EKRLVVPFVSFASIMFAFGACFCYFVV TATC_CAMJE 100 -1 -
ERKATLAYIPIAFFLFLGGLSFAYFIL YDIJ_BACHD 99 -1 -
ERKVILPILIGSIVLFIVGGIFAYFVL YC43_PORPU 118 -1 -
EKRTIRKVLLPATSLFIAGASFAYFII Q974R1 128 -1 -
ERRLLIPILIASGCLFVAGLIFGYIYI YC43_CYACA 103 -1 -
ERKTLLPIIIGSMILFLLGLIFGYYIL YC43_GUITH 148 -1 -
VTIMYIMYIPGLFALFLAGISFGYFVL YCBT_BACSU 99 2 -
ETKIILPLLLSSLGLFGFGLVFSYYAL YC43_ODOSI 127 -1 -
EKKIIAFILFMSPILFWCGSIFVFYFV Q92GA8 102 -1 -
EKKIIAFILFMSPILFWCGSIFVFYFV TATC_RICPR 101 -1 -
EKKIFKLTMIPAFLLFFSGSLFAFLIL Q97UB0 145 -1 -
ERRFLKAILIPSYGIFLFGTFFAYKFV O28760 102 -1 -
EISAIRSLGIPAAVLFAIGSIFGFWFI Q97BT1 123 -1 -
EERAVKKYLGGSLILFYLGNLFSIYVI Q8ZWZ6 134 -1 -
ERRYYLASVPTSLVLSVVGVLFAFFIV Q9HN36 207 -1 -
EKKLFRLLCLTSIFLYFLGSCIGYYLL YM16_RECAM 95 -1 -

Motif 4 width=29
Element Seqn Id St Int Rpt
YLDFVLALFLAFGIAFEVPVAIILLCWTG Q9KVQ3 155 24 -
YLDFVLTLFFAFGVAFEIPVATVLLIWIG Q9HUB3 162 24 -
YLSFVMALFMAFGVAFEVPVAIVLLCWMG Q9L6M3 154 24 -
YLSFVMALFMAFGVSFEVPVAIVLLCWMG TATC_ECOLI 154 24 -
YLDFVLTLFFAFGVAFEIPVATFLLIWVG Q9AKS0 158 24 -
YLDFVLTLFFAFGVAFEVPVATFLLIWVG TATC_AZOCH 158 24 -
YLDFVMALFMAFGISFEVPIAIILLCWAG Q8ZAM4 154 24 -
YLDFVLTIFLAFGVCFEVPVAIILLCWTG Q9CKD2 154 24 -
YLDFALALFLAFGVCFEVPIAIILLCWTG TATC_HAEIN 155 24 -
YLSFILGMFVAFGTTFEVPIVVILLTKIG Q9JVK2 158 24 -
YLSFILGMFVAFGTTFEVPIVVILLTKIG Q9K0J7 158 24 -
YFEFVLVLMFSTGLSFQVPVIQLLLGQVG Q9SJV5 242 24 -
YFEFVLVLMFSTGLSFQVPVIQLLLGQVG Q9XFI4 255 24 -
YFEFVLLLLFSTGLAFQVPIIQLLLANLG Q8YU98 179 24 -
YFEFVLLLMFSTGLAFQIPIIQVVLGFLG Y194_SYNY3 169 24 -
YLDFVLAIFFAFGASFELPVAMVILTVLH Q9PFU5 158 24 -
YLSLIMSLVFAFGLVFQLPVITTLLARVG Q92Q23 169 30 -
YISFVLKLVVAFGIAFEMPIVLYVLQKAG YC67_AQUAE 149 26 -
YFEFVLVLLFSTGLSFQVPVIQLLLGQVG Q9AVE6 274 24 -
YLSFAMTTFLAFGITFEVPVVVIVLVRFG Q8VQ52 167 25 -
YLSFAMTTFLAFGITFEVPVVVIVLVRFG Q8XV91 166 25 -
YLSLIMTLIFAFGLVFQLPVVTSLMARVG Q8YGS5 172 30 -
YFEFVLVLMFSTGLSFQVPIIQLLLGQLG Q94G17 268 24 -
YFHFLLQLTIPFGLLFQMPVILMFLTRLG YDIJ_BACSU 154 25 -
YLSLIMTLIFSFGLVFQLPVVTSLMTRVG Q98LC7 175 30 -
YLTLVTTLLLAFGLSFQLPVVLSLGGLAG Q9A6T2 200 28 -
YVSFFTRLILGFGVAFELPVLAYFLAKVG TATC_HELPY 144 24 -
YFELVLGLMFFTGLAFQVPVVQMILSWLG Q9WWL0 161 24 -
YVSFFTRLILGFGVAFELPVLAYFLAKVG TATC_HELPJ 144 24 -
YFGFLLNLLVVFGVSFEFPLLIVMLNLAG TATC_MYCTU 187 23 -
YFGFLLNLLVVFGVSFEFPLLIVMLNIAG TATC_MYCLE 187 23 -
YIGTVVTFLVAFGVAFELPILAVILTRLG Q9RW63 172 24 -
FVSTVMTLLIATGLSFELPLIMGGLTGVG Q97ZU3 195 27 -
YFQFLLQIVLSFGVLFELPMVIMLLTRLS Q8YA05 151 25 -
YFQFLLQIVLSFGVLFELPMVIMLLTRLS Q92ES8 151 25 -
LLDLVTRMVVVFGLSFELPLLLVMLNFTG Q9F2H3 163 23 -
LLDLVTRMVVVFGLSFELPLLLVMLNFTG Q9RJ69 178 23 -
YVDFFTKVVVAFGLAFEMPVIAFFFAKIG TATC_CAMJE 152 25 -
YFTFLFQITMPFGVLFQLPVVVMFLTRLG YDIJ_BACHD 151 25 -
YFDFILLLLFSTGLAFEIPIIQLLLGISG YC43_PORPU 169 24 -
YVSTIVTLMIAVGASFEFPLVMTSLTQLG Q974R1 180 25 -
YFDFIILSLFSTAISFQIPIFQILLGSLK YC43_CYACA 154 24 -
YFEFILVLLFGTALAFQLPVLQLVLGFLR YC43_GUITH 199 24 -
YFRFMVNLSLPFGFLFEMPLVVMFLTRLG YCBT_BACSU 150 24 -
YFEFILVLFYSTGLAFQIPIIQILLGLLN YC43_ODOSI 178 24 -
YLNLVIHLIIAFGVAFQLPIVIMILNILK Q92GA8 157 28 -
YLNLVIHLIIAFGIAFQLPIVIIVLNILK TATC_RICPR 156 28 -
FISTTFLLMGSLGLAFEMPLIMIGLTHLR Q97UB0 199 27 -
TLTNAFKLLISFGFFFQIPLFMVLSDRFG O28760 150 21 -
FTSFLFVYIISFGLSFEMPVIMVALTRLK Q97BT1 175 25 -
VVNTWITLALMSGVIFETPVVMAILSEIC Q8ZWZ6 186 25 -
TFNLLLLVMGYLAVVFQIPLFIMLAIMLG Q9HN36 258 24 -
YLILNTKLIFSLSICFQLPVLILFLFKIY YM16_RECAM 152 30 -