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PR01590

Identifier
HTHFIS  [View Relations]  [View Alignment]  
Accession
PR01590
No. of Motifs
2
Creation Date
23-SEP-2001
Title
FIS bacterial regulatory protein HTH signature
Database References
PRINTS; PR01591 DNABINDNGFIS
INTERPRO; IPR002197 HTH_F
PDB; 1ETY
SCOP; 1ETY
CATH; 1ETY
Literature References
1. OSUNA, R., LIENAU, D., HUGHES, K.T. AND JOHNSON, R.C.
Sequence, regulation, and function of fis in Salmonella typhimurium.
J.BACTERIOL. 177 2021-2032 (1995).
 
2. WILSON, R.L., LIBBY, S.J., FREET, A.M., BODDICKER, J.D., FAHLEN, T.F.
AND JONES, B.D.
Fis, a DNA nucleoid-associated protein, is involved in Salmonella 
typhimurium SPI-I invasion gene expression.
MOL.MICROBIOL. 39 79-88 (2001).
 
3. GOLDBERG, M.D., JOHNSON, M., HINTON, J.C. AND WILLIAMS, P.H.
Role of the nucleoid-associated protein Fis in the regulation of virulence 
properties of enteropathogenic Escherichia coli.
MOL.MICROBIOL. 41 549-559 (2001).
 
4. MORETT, E. AND BORK, P.
Evolution of new protein function: recombinational enhancer Fis originated 
by horizontal gene transfer from the transcriptional regulator NtrC.
FEBS LETT. 433 108-112 (1998).
 
5. KOSTREWA, D., GRANZIN, J., KOCH, C., CHOE, H.W., RAGHUNATHAN, S.,
WOLF, W., LABAHN, J., KAHMANN, R. AND SAENGER, W.
Three-dimensional structure of the E. coli DNA-binding protein FIS. 
NATURE 349 178-180 (1991). 
 
6. CHENG, Y.S., YANG, W.Z., JOHNSON, R.C. AND YUAN, H.S.
Structural analysis of the transcriptional activation on Fis: crystal 
structures of six Fis mutants with different activation properties.
J.MOL.BIOL. 302 1139-1151 (2000).

Documentation
Transcriptional regulators of prokaryotes play an important role in the 
production of several proteins, and in the growth of the cell [1]. By 
regulating gene expression, activation or repression of transcription of a 
variety of genes can be achieved [1]. 
 
The Factor for Inversion Stimulation (FIS) protein is a regulator of
bacterial functions, and binds specifically to weakly related DNA sequences 
[1,2]. It activates ribosomal RNA transcription, and is involved in upstream
activation of rRNA promoters. Found in gamma proteobacterial microbes, the
protein has been shown to play a role in the regulation of virulence factors
in both Salmonella typhimurium and Esherichia coli [2,3]. Some of its
functions include inhibition of the initiation of DNA replication from the
OriC site, and promotion of Hin-mediated DNA inversion [3].
 
In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA-
binding motif, which shares a high degree of similarity with other HTH
motifs of more primitive bacterial transcriptional regulators, such as the
nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter,
Rhodobacter and Rhizobium. This has led to speculation that both evolved
from a single common ancestor [4]. 
 
The 3-dimensional structure of the E. coli FIS DNA-binding protein has been
determined by means of X-ray diffraction to 2.0A resolution [5,6]. FIS is
composed of four alpha-helices tightly intertwined to form a globular dimer
with two protruding HTH motifs. The 24 N-terminal amino acids are poorly 
defined, indicating that they might act as `feelers' suitable for DNA or
protein (invertase) recognition [5]. 
 
HTHFIS is a 2-element fingerprint that provides a signature for the FIS 
bacterial regulatory protein HTH motif. The fingerprint was derived from an
initial alignment of 11 sequences: the motifs span the C-terminal HTH motif
- motif 1 encodes the first helix and motif 2 the second. Twelve iterations
on SPTR39.22_17.3f were required to reach convergence, at which point a true
set comprising 158 sequences was identified.
Summary Information
158 codes involving  2 elements
Composite Feature Index
2158158
12
True Positives
ANFA_AZOVI    ATOC_ECOLI    CRTJ_RHOCA    FIS_BUCAI     
FIS_ECOLI FIS_ERWCA FIS_HAEIN FIS_PASHA
FIS_PASMU FLBD_CAUCR HOXA_ALCEU HOXA_BRAJA
HUPR_RHOCA NIFA_AZOBR NIFA_AZOCA NIFA_AZOLI
NIFA_AZOVI NIFA_BRAJA NIFA_ENTAG NIFA_HERSE
NIFA_KLEOX NIFA_KLEPN NIFA_RHIET NIFA_RHILE
NIFA_RHILT NIFA_RHIME NIFA_RHISN NIFA_RHOCA
NTRC_AZOBR NTRC_BRASR NTRC_ECOLI NTRC_KLEPN
NTRC_PROVU NTRC_RHIME NTRC_RHOCA NTRC_SALTY
O30349 O30662 O31393 O31551
O52268 O66502 O66591 O67661
O69184 O83532 O84957 O85504
O85963 O86057 O86183 O87788
P72076 P72311 PILR_PSEAE PRPR_SALTY
Q00936 Q06573 Q43898 Q43912
Q43965 Q44430 Q46141 Q50904
Q51452 Q51454 Q51460 Q51994
Q52169 Q52177 Q52200 Q52678
Q52834 Q53023 Q53182 Q53221
Q53224 Q56291 Q56708 Q99329
Q9A2I2 Q9A7F6 Q9A7I2 Q9ABI0
Q9AFA4 Q9AG18 Q9AGD7 Q9AMY3
Q9AQ14 Q9CHB7 Q9EUT8 Q9EYT5
Q9EYT7 Q9EYV2 Q9EZZ3 Q9F1E2
Q9F2C0 Q9F4H5 Q9F5V2 Q9F9U3
Q9FD94 Q9HU59 Q9HUW0 Q9HVS8
Q9HWN4 Q9I0H3 Q9I1C4 Q9I2A4
Q9I2F9 Q9I362 Q9I409 Q9I4E2
Q9I4N3 Q9JP99 Q9JR42 Q9JR83
Q9K4U8 Q9K559 Q9K5Z1 Q9K633
Q9K984 Q9K9B0 Q9KBU8 Q9KFE4
Q9KLN9 Q9KMY4 Q9KN48 Q9KQ66
Q9KRG3 Q9KRW2 Q9KV67 Q9L4Q6
Q9L6Y0 Q9L734 Q9PAE0 Q9PAH3
Q9PBY7 Q9PCD3 Q9R6Q4 Q9R6S1
Q9REL8 Q9RF09 Q9RLD0 Q9RMT0
Q9RNP2 Q9S0K1 Q9S150 Q9S2Z8
Q9S301 Q9X6S7 Q9X6U6 Q9ZNN9
ROCR_BACSU VNFA_AZOVI XYLR_PSEPU Y4PA_RHISN
YGAA_ECOLI YQIR_BACSU
Sequence Titles
ANFA_AZOVI  NITROGEN FIXATION PROTEIN ANFA - Azotobacter vinelandii. 
ATOC_ECOLI ACETOACETATE METABOLISM REGULATORY PROTEIN ATOC (ORNITHINE/ARGININE DECARBOXYLASE INHIBITOR) (ORNITHINE DECARBOXYLASE ANTIZYME) - Escherichia coli.
CRTJ_RHOCA CRTJ PROTEIN - Rhodobacter capsulatus (Rhodopseudomonas capsulata).
FIS_BUCAI DNA-BINDING PROTEIN FIS - Buchnera aphidicola (subsp. Acyrthosiphon pisum) (Acyrthosiphon pisum symbiotic bacterium).
FIS_ECOLI DNA-BINDING PROTEIN FIS (FACTOR-FOR-INVERSION STIMULATION PROTEIN) (HIN RECOMBINATIONAL ENHANCER BINDING PROTEIN) - Escherichia coli, and Salmonella typhimurium.
FIS_ERWCA DNA-BINDING PROTEIN FIS - Erwinia carotovora.
FIS_HAEIN DNA-BINDING PROTEIN FIS - Haemophilus influenzae.
FIS_PASHA DNA-BINDING PROTEIN FIS - Pasteurella haemolytica.
FIS_PASMU DNA-BINDING PROTEIN FIS - Pasteurella multocida.
FLBD_CAUCR TRANSCRIPTIONAL REGULATORY PROTEIN FLBD - Caulobacter crescentus.
HOXA_ALCEU HYDROGENASE TRANSCRIPTIONAL REGULATORY PROTEIN HOXA - Alcaligenes eutrophus (Ralstonia eutropha).
HOXA_BRAJA HYDROGENASE TRANSCRIPTIONAL REGULATORY PROTEIN HOXA - Bradyrhizobium japonicum.
HUPR_RHOCA HYDROGENASE TRANSCRIPTIONAL REGULATORY PROTEIN HUPR1 - Rhodobacter capsulatus (Rhodopseudomonas capsulata).
NIFA_AZOBR NIF-SPECIFIC REGULATORY PROTEIN - Azospirillum brasilense.
NIFA_AZOCA NIF-SPECIFIC REGULATORY PROTEIN - Azorhizobium caulinodans.
NIFA_AZOLI NIF-SPECIFIC REGULATORY PROTEIN - Azospirillum lipoferum.
NIFA_AZOVI NIF-SPECIFIC REGULATORY PROTEIN - Azotobacter vinelandii.
NIFA_BRAJA NIF-SPECIFIC REGULATORY PROTEIN - Bradyrhizobium japonicum.
NIFA_ENTAG NIF-SPECIFIC REGULATORY PROTEIN - Enterobacter agglomerans.
NIFA_HERSE NIF-SPECIFIC REGULATORY PROTEIN - Herbaspirillum seropedicae.
NIFA_KLEOX NIF-SPECIFIC REGULATORY PROTEIN - Klebsiella oxytoca.
NIFA_KLEPN NIF-SPECIFIC REGULATORY PROTEIN - Klebsiella pneumoniae.
NIFA_RHIET NIF-SPECIFIC REGULATORY PROTEIN - Rhizobium etli.
NIFA_RHILE NIF-SPECIFIC REGULATORY PROTEIN - Rhizobium leguminosarum.
NIFA_RHILT NIF-SPECIFIC REGULATORY PROTEIN - Rhizobium leguminosarum (biovar trifolii).
NIFA_RHIME NIF-SPECIFIC REGULATORY PROTEIN - Rhizobium meliloti (Sinorhizobium meliloti).
NIFA_RHISN NIF-SPECIFIC REGULATORY PROTEIN - Rhizobium sp. (strain NGR234).
NIFA_RHOCA NIF-SPECIFIC REGULATORY PROTEIN - Rhodobacter capsulatus (Rhodopseudomonas capsulata).
NTRC_AZOBR NITROGEN ASSIMILATION REGULATORY PROTEIN - Azospirillum brasilense.
NTRC_BRASR NITROGEN ASSIMILATION REGULATORY PROTEIN - Bradyrhizobium sp. (strain RP501 Parasponia).
NTRC_ECOLI NITROGEN REGULATION PROTEIN NR(I) - Escherichia coli.
NTRC_KLEPN NITROGEN ASSIMILATION REGULATORY PROTEIN - Klebsiella pneumoniae.
NTRC_PROVU NITROGEN REGULATION PROTEIN NR(I) - Proteus vulgaris.
NTRC_RHIME NITROGEN ASSIMILATION REGULATORY PROTEIN - Rhizobium meliloti (Sinorhizobium meliloti).
NTRC_RHOCA NITROGEN REGULATION PROTEIN NTRC - Rhodobacter capsulatus (Rhodopseudomonas capsulata).
NTRC_SALTY NITROGEN REGULATION PROTEIN NR(I) - Salmonella typhimurium.
O30349 PEHR - Burkholderia solanacearum (Pseudomonas solanacearum).
O30662 SIGMA 54 TRANSCRIPTIONAL ACTIVATOR - Vibrio cholerae.
O31393 SIGMA 54 ACTIVATOR - Bacillus megaterium.
O31551 TRANSCRIPTIONAL REGULATOR - Bacillus subtilis.
O52268 NIFAII PROTEIN - Rhodobacter capsulatus (Rhodopseudomonas capsulata).
O66502 TRANSCRIPTIONAL REGULATOR (H-T-H) - Aquifex aeolicus.
O66591 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) - Aquifex aeolicus.
O67661 TRANSCRIPTIONAL REGULATOR (NTRC FAMILY) - Aquifex aeolicus.
O69184 PUTATIVE TRANSCRIPTIONAL ACTIVATOR - Alcaligenes eutrophus (Ralstonia eutropha).
O83532 RESPONSE REGULATORY PROTEIN (ATOC) - Treponema pallidum.
O84957 POSITIVE PHENOL-DEGRADATIVE GENE REGULATOR - Ralstonia sp. E2.
O85504 RESPONSE REGULATOR SPDR - Myxococcus xanthus.
O85963 REGULATOR AROMATIC DEGRADATIVE PATHWAYS - Sphingomonas aromaticivorans.
O86057 TRANSCRIPTIONAL ACTIVATOR NTRC - Herbaspirillum seropedicae.
O86183 NTRC-TYPE RESPONSE REGULATOR - Eubacterium acidaminophilum.
O87788 ACOR PROTEIN - Pseudomonas putida.
P72076 RSP - Neisseria gonorrhoeae.
P72311 TRANSCRIPTIONAL ACTIVATOR TBUT - Burkholderia pickettii (Pseudomonas pickettii).
PILR_PSEAE TYPE 4 FIMBRIAE EXPRESSION REGULATORY PROTEIN PILR - Pseudomonas aeruginosa.
PRPR_SALTY PROPIONATE CATABOLISM OPERON REGULATORY PROTEIN - Salmonella typhimurium.
Q00936 RTEB PROTEIN - Bacteroides thetaiotaomicron.
Q06573 TRANSCRIPTIONAL REGULATORY PROTEIN DMPR - Pseudomonas sp. CF600.
Q43898 NTRB, NTRC - Azospirillum brasilense.
Q43912 NTRB AND NTRC GENES - Azospirillum brasilense.
Q43965 MOPR - Acinetobacter calcoaceticus.
Q44430 NITROGEN REGULATORY PROTEIN - Agrobacterium radiobacter.
Q46141 ACOR - Clostridium magnum.
Q50904 REGULATORY PROTEIN (PUTATIVE SIGMA-54 DEPENDENT TRANSCRIPTIONAL ACTIVATOR) - Myxococcus xanthus.
Q51452 TRANSCRIPTIONAL ACTIVATOR (FLEQ) - Pseudomonas aeruginosa.
Q51454 TRANSCRIPTIONAL ACTIVATOR - Pseudomonas aeruginosa.
Q51460 REGULATORY PROTEIN (TRANSCRIPTIONAL REGULATOR FLEQ) - Pseudomonas aeruginosa.
Q51994 TMBR - Pseudomonas putida.
Q52169 PHER PROTEIN - Pseudomonas putida.
Q52177 PHHR GENE - Pseudomonas putida.
Q52200 ACTIVATOR PROTEIN PH1R - Pseudomonas putida.
Q52678 ANFA TRANSCRIPTIONAL ACTIVATOR OF THE ALTERNATIVE NITROGENASE - Rhodobacter capsulatus (Rhodopseudomonas capsulata).
Q52834 TRANSCRIPTIONAL ACTIVATOR - Rhizobium leguminosarum.
Q53023 PUTATIVE DNA-BINDING PROTEIN - Rhodospirillum rubrum.
Q53182 NTRB (PARTIAL) AND NTRC GENES (PARTIAL) - Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides).
Q53221 REGULATORY PROTEIN - Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides).
Q53224 REPRESSOR PROTEIN - Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides).
Q56291 DNA-BINDING PROTEIN - Thiobacillus ferrooxidans.
Q56708 POLAR FLAGELLAR PROTEIN - Vibrio parahaemolyticus.
Q99329 NIF-SPECIFIC REGULATORY PROTEIN - Rhizobium leguminosarum.
Q9A2I2 TRANSCRIPTIONAL REGULATOR, INTERNAL DELETION - Caulobacter crescentus.
Q9A7F6 RESPONSE REGULATOR - Caulobacter crescentus.
Q9A7I2 NITROGEN REGULATION PROTEIN NR(I) - Caulobacter crescentus.
Q9ABI0 RESPONSE REGULATOR - Caulobacter crescentus.
Q9AFA4 PUTATIVE TRANSCRIPTION REGULATOR TXR - Vibrio harveyi.
Q9AG18 NIFA2 - Frankia sp. (strain EuIK1).
Q9AGD7 PUTATIVE TRANSCRIPTIONAL REGULATOR - Yersinia pseudotuberculosis.
Q9AMY3 NIFA - Bradyrhizobium japonicum.
Q9AQ14 NITROGEN FIXATION PROTEIN NIFA - Bradyrhizobium sp. WM9.
Q9CHB7 HYPOTHETICAL PROTEIN YICE - Lactococcus lactis (subsp. lactis) (Streptococcus lactis).
Q9EUT8 PUTATIVE TRANSCRIPTIONAL REGULATOR - Rhodococcus erythropolis.
Q9EYT5 FLER - Pseudomonas fluorescens.
Q9EYT7 ADNA - Pseudomonas fluorescens.
Q9EYV2 NIFA - Rhizobium loti (Mesorhizobium loti).
Q9EZZ3 SASR - Myxococcus xanthus.
Q9F1E2 TRANSCRIPTIONAL REGULATOR NIFA - Acetobacter diazotrophicus.
Q9F2C0 HYPOTHETICAL 63.8 KDA PROTEIN - Thauera aromatica.
Q9F4H5 PHAGE SHOCK PROTEIN F - Yersinia enterocolitica.
Q9F5V2 RTEB - Bacteroides fragilis.
Q9F9U3 SIGMA54-DEPENDENT TRANSCRIPTIONAL REGULATOR ADHR - Pseudomonas stutzeri (Pseudomonas perfectomarina).
Q9FD94 NIFA - Azospirillum brasilense.
Q9HU59 TWO-COMPONENT RESPONSE REGULATOR NTRC - Pseudomonas aeruginosa.
Q9HUW0 DNA-BINDING PROTEIN FIS - Pseudomonas aeruginosa.
Q9HVS8 PROBABLE TWO-COMPONENT RESPONSE REGULATOR - Pseudomonas aeruginosa.
Q9HWN4 TRANSCRIPTIONAL REGULATOR ACOR - Pseudomonas aeruginosa.
Q9I0H3 PROBABLE TRANSCRIPTIONAL REGULATOR - Pseudomonas aeruginosa.
Q9I1C4 PROBABLE TRANSCRIPTIONAL REGULATOR - Pseudomonas aeruginosa.
Q9I2A4 PROBABLE TRANSCRIPTIONAL REGULATOR - Pseudomonas aeruginosa.
Q9I2F9 PROBABLE TRANSCRIPTIONAL REGULATOR - Pseudomonas aeruginosa.
Q9I362 PROBABLE TRANSCRIPTIONAL REGULATOR - Pseudomonas aeruginosa.
Q9I409 PROBABLE TWO-COMPONENT RESPONSE REGULATOR - Pseudomonas aeruginosa.
Q9I4E2 PROBABLE TRANSCRIPTIONAL REGULATOR - Pseudomonas aeruginosa.
Q9I4N3 TWO-COMPONENT RESPONSE REGULATOR - Pseudomonas aeruginosa.
Q9JP99 PPSR PROTEIN - Rhodocyclus gelatinosus (Rhodopseudomonas gelatinosa).
Q9JR42 FACTOR-FOR-INVERSION-STIMULATION PROTEIN (FACTOR-FOR-INVERSION STIMULATION PROTEIN FIS, PUTATIVE) - Neisseria meningitidis (serogroup A), and Neisseria meningitidis (serogroup B).
Q9JR83 PUTATIVE TWO COMPONENT RESPONSE REGULATOR (SIGMA-54 DEPENDENT RESPONSE REGULATOR) - Neisseria meningitidis (serogroup A), and Neisseria meningitidis (serogroup B).
Q9K4U8 NITRIC OXIDE REDUCTASE REGULATOR NORR2 - Alcaligenes eutrophus (Ralstonia eutropha).
Q9K559 PUTATIVE HYDROGENASE TRANSCRIPTIONAL REGULATOR - Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides).
Q9K5Z1 TRANSCRIPTIONAL ACTIVATOR OF ARGININE UTILIZATION OPERONS - Bacillus halodurans.
Q9K633 TRANSCRIPTIONAL REGULATOR - Bacillus halodurans.
Q9K984 TRANSCRIPTIONAL REGULATOR - Bacillus halodurans.
Q9K9B0 TRANSCRIPTIONAL REGULATOR - Bacillus halodurans.
Q9KBU8 TRANSCRIPTIONAL ACTIVATOR OF THE ACETOIN DEHYDROGENASE OPERON - Bacillus halodurans.
Q9KFE4 TRANSCRIPTIONAL REGULATOR - Bacillus halodurans.
Q9KLN9 PHOSPHOGLYCERATE TRANSPORT SYSTEM TRANSCRIPTIONAL REGULATORY PROTEIN PGTA - Vibrio cholerae.
Q9KMY4 SIGMA-54 DEPENDENT TRANSCRIPTIONAL REGULATOR - Vibrio cholerae.
Q9KN48 SIGMA-54 DEPENDENT TRANSCRIPTIONAL REGULATOR - Vibrio cholerae.
Q9KQ66 SIGMA-54 DEPENDENT TRANSCRIPTIONAL ACTIVATOR - Vibrio cholerae.
Q9KRG3 PSP OPERON TRANSCRIPTIONAL ACTIVATOR - Vibrio cholerae.
Q9KRW2 SIGMA-54 DEPENDENT RESPONSE REGULATOR - Vibrio cholerae.
Q9KV67 FACTOR-FOR-INVERSION STIMULATION PROTEIN - Vibrio cholerae.
Q9L4Q6 SIGMA-54-DEPENDENT TRANSCRIPTIONAL ACTIVATOR - Clostridium sticklandii.
Q9L6Y0 SIGMA-54 ACTIVATOR PROTEIN ACT1 - Myxococcus xanthus.
Q9L734 TWO COMPONENT SIGNAL RESPONSE REGULATOR LUXO - Vibrio fischeri.
Q9PAE0 TWO-COMPONENT SYSTEM, REGULATORY PROTEIN - Xylella fastidiosa.
Q9PAH3 TWO-COMPONENT SYSTEM, REGULATORY PROTEIN - Xylella fastidiosa.
Q9PBY7 DNA-BINDING PROTEIN - Xylella fastidiosa.
Q9PCD3 TWO-COMPONENT SYSTEM, REGULATORY PROTEIN - Xylella fastidiosa.
Q9R6Q4 SIGMA 54-DEPENDENT TRANSCRIPTIONAL ACTIVATOR - Pseudomonas stutzeri (Pseudomonas perfectomarina).
Q9R6S1 HUPR PROTEIN - Thiocapsa roseopersicina.
Q9REL8 RESPONSE REGULATOR HUPR - Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides).
Q9RF09 FRGC - Myxococcus xanthus.
Q9RLD0 RESPONSE REGULATOR - Pseudomonas stutzeri (Pseudomonas perfectomarina).
Q9RMT0 FLBD - Azospirillum brasilense.
Q9RNP2 NITROGEN ASSIMILATION REGULATORY PROTEIN - Zymomonas mobilis.
Q9S0K1 NTRC - Shewanella violacea.
Q9S150 POSITIVE REGULATOR OF PHENOL-DEGRADATIVE GENES - Comamonas testosteroni (Pseudomonas testosteroni).
Q9S2Z8 NIFR1 PROTEIN - Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides).
Q9S301 PPSR PROTEIN - Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides).
Q9X6S7 IMMUNOREACTIVE 47 KDA ANTIGEN PG120 - Porphyromonas gingivalis (Bacteroides gingivalis).
Q9X6U6 TRANSCRIPTIONAL ACTIVATOR NIFA - Rhodospirillum rubrum.
Q9ZNN9 APHR PROTEIN - Comamonas testosteroni (Pseudomonas testosteroni).
ROCR_BACSU ARGININE UTILIZATION REGULATORY PROTEIN ROCR - Bacillus subtilis.
VNFA_AZOVI NITROGEN FIXATION PROTEIN VNFA - Azotobacter vinelandii.
XYLR_PSEPU TRANSCRIPTIONAL REGULATORY PROTEIN XYLR (67 KDA PROTEIN) - Pseudomonas putida.
Y4PA_RHISN PUTATIVE TRANSCRIPTIONAL REGULATORY PROTEIN Y4PA - Rhizobium sp. (strain NGR234).
YGAA_ECOLI HYPOTHETICAL SIGMA-54-DEPENDENT TRANSCRIPTIONAL REGULATOR IN GUTQ-HYPF INTERGENIC REGION - Escherichia coli.
YQIR_BACSU PUTATIVE SIGMA L-DEPENDENT TRANSCRIPTIONAL REGULATOR IN MMGE-BFMBAA INTERGENIC REGION - Bacillus subtilis.
Scan History
SPTR39.22_17.3f 12 590  NSINGLE    
Initial Motifs
Motif 1  width=18
Element Seqn Id St Int Rpt
PLILAALTATRGNQIKAA NTRC_RHIME 439 439 -
PLLTAALAATRGNQIRAA NTRC_BRASR 437 437 -
PLIEIALDATGGNQAKCA NTRC_RHOCA 412 412 -
PLISLSLSATRGNQIKAA NTRC_AZOBR 438 438 -
PMLDMVMQYTRGNQTRAA FIS_PASHA 61 61 -
PMLDMVMQYTRGNQTRAA FIS_PASMU 62 62 -
PMLDMIMQYTRGNQTRAA FIS_HAEIN 62 62 -
PLLDMIMQYTRGNQTRAA FIS_BUCAI 61 61 -
PLLDMVMQYTRGNQTRAA FIS_ECOLI 61 61 -
PLLDMVMQYTRGNQTRAA FIS_ERWCA 61 61 -
PLLDTIMQYTRGNQTRAA Q9KV67 61 61 -

Motif 2 width=21
Element Seqn Id St Int Rpt
ADLLGLNRNTLRKKIRELGVS NTRC_RHIME 456 -1 -
ADLLGLNRNTLRKKIRDLDIQ NTRC_BRASR 454 -1 -
ADLLGINRNTLRKKITDLDIQ NTRC_RHOCA 429 -1 -
AQLLGLNRNTLRKKIRDLDIQ NTRC_AZOBR 455 -1 -
ATMLGINRGTLRKKLKKYGMG FIS_PASHA 78 -1 -
ATMLGINRGTLRKKLKKYGMG FIS_PASMU 79 -1 -
ANMLGINRGTLRKKLKKYGMG FIS_HAEIN 79 -1 -
ALMLGINRSTLRKKLKKYSMN FIS_BUCAI 78 -1 -
ALMMGINRGTLRKKLKKYGMN FIS_ECOLI 78 -1 -
ALMMGINRGTLRKKLKKYGMN FIS_ERWCA 78 -1 -
ATMMGINRGTLRKKLKKYGMN Q9KV67 78 -1 -
Final Motifs
Motif 1  width=18
Element Seqn Id St Int Rpt
EKIKEALERAGGNKSLAA O66502 173 173 -
PLILAALTATRGNQIKAA NTRC_RHIME 439 439 -
PLILAALTATRGNQIKAA Q44430 438 438 -
PLLTAALAATRGNQIRAA NTRC_BRASR 437 437 -
ERILRALKQANGNRSVAA Q00936 397 397 -
PLISLCLEATRGNQIKAA Q53023 437 437 -
QAMADALKRAGDNRTLAA Q9RF09 429 429 -
AQIKAALTRTYGNKSAAA Q9K9B0 489 489 -
AAVRRALTQAGGNVSAAA Q9A2I2 271 271 -
PLIEIALDATGGNQAKCA NTRC_RHOCA 412 412 -
PLLVEVLNHCEGNQSRAA Q9PBY7 53 53 -
KLIMQALEETRWNRTAAA PILR_PSEAE 408 408 -
LCIEAALELTRDNRASAA Q9JP99 435 435 -
AMLRAAVAEANGNLSRAA O69184 551 551 -
KLIMQALEETRWNRTAAA Q9RLD0 409 409 -
ERLIAAMERSGWVQAKAA Q9EYV2 562 562 -
TAIIDALHDAGGNKHKAA Q9EUT8 514 514 -
TLLLSALAYTQGHKQDAA NTRC_PROVU 434 434 -
LVIREALDASGGNVARAA O85963 508 508 -
PLISLSLSATRGNQIKAA NTRC_AZOBR 438 438 -
PLISLSLSATRGNQIKAA Q43898 437 437 -
PLISLSLSATRGNQIKAA Q43912 438 438 -
ERVLRALKQANGNRKVAA Q9F5V2 397 397 -
TLLTTALRHTQGHKQEAA NTRC_ECOLI 432 432 -
TLLTTALRHTQGHKQEAA NTRC_SALTY 432 432 -
TLLTTALRHTQGHKQEAA NTRC_KLEPN 432 432 -
KRIIEALEKTGYVKSRAA O67661 456 456 -
PLIEIALDATAGNQAKCA Q53182 410 410 -
PLIEIALDATAGNQAKCA Q9S2Z8 410 410 -
TLLETALDKARGNLSSAA Q9F2C0 525 525 -
PLIQLTLSATRGNQVRAA Q9A7I2 430 430 -
SLMREAMQQANQNVSGAA Q06573 525 525 -
SLMREAMQQANQNVSGAA Q52169 525 525 -
AMLRAAVIEANGNLSRAA P72311 551 551 -
NLINQALEAQGGVVARAA O30662 450 450 -
NLINQALEAQGGVVARAA Q9KQ66 450 450 -
PMLDMVMQYTRGNQTRAA FIS_PASHA 61 61 -
PMLDMVMQYTRGNQTRAA FIS_PASMU 62 62 -
PMLDMIMQYTRGNQTRAA FIS_HAEIN 62 62 -
PLLDMIMQYTRGNQTRAA FIS_BUCAI 61 61 -
ERVVAAMEKSGWVQAKAA NIFA_BRAJA 541 541 -
ERVVAAMEKSGWVQAKAA Q9AMY3 564 564 -
RAIRAAVEAAGGNLSAAA Q9F9U3 597 597 -
MCIETALELTGNNRVAAA CRTJ_RHOCA 427 427 -
GLIQQALDDAGGVVARAA Q51452 444 444 -
GLIQQALDDAGGVVARAA Q51460 444 444 -
SVILAALAQTGFNRTAAA O30349 505 505 -
EHIQQALHETDGNISAAA Q9PAE0 147 147 -
DRLLWAMERTGWVQAKAA NIFA_AZOBR 584 584 -
DRLLWAMERTGWVQAKAA Q9FD94 584 584 -
DRLLWAMERTGWVQAKAA NIFA_AZOLI 583 583 -
DLIGRALAQSAGNVVEAA Q9I2A4 432 432 -
EELLRALESAGWVQAKAA NIFA_RHOCA 512 512 -
EELLRALESAGWVQAKAA O52268 541 541 -
AAIQKALEENRWNKTKTA Q9PAH3 460 460 -
QLIIDTLEHCLGNRTHAA FLBD_CAUCR 403 403 -
CLLEAALQHTRGHKQSAA Q56291 426 426 -
NLIEDALRQARGNLSRAA Q9I4E2 422 422 -
DLLLACLRRNAGNQTLAA Q9I362 460 460 -
ERIVHAMEKAGWVQAKAA Q9X6U6 559 559 -
TLMREAMQQANQNVSGAA Q52177 525 525 -
TLMREAMQQANQNVSGAA Q52200 525 525 -
ERVIAAMERSGWVQAKAA Q9AQ14 543 543 -
NMISQALEAQGGGVARAA Q56708 450 450 -
DELLEAMETAGWVQAKAA Q9F1E2 540 540 -
PLLDMVMQYTRGNQTRAA FIS_ECOLI 61 61 -
PLLDMVMQYTRGNQTRAA FIS_ERWCA 61 61 -
PLLDTIMQYTRGNQTRAA Q9KV67 61 61 -
ELLISAMEKAGWVQAKAA NIFA_RHISN 553 553 -
MCIETALELTRNNRVAAA Q53221 423 423 -
MCIETALELTRNNRVAAA Q9S301 423 423 -
MCIETALELTRNNRVAAA Q53224 423 423 -
QVILETLAKTGGNKTLAA Q9K984 644 644 -
QMLKRALEQARFNQRKAA Q9F4H5 295 295 -
VVLKEALLRHRWNKTHAA HOXA_ALCEU 443 443 -
RILRETLTRNRWNKSRAA HUPR_RHOCA 443 443 -
VLMEAAMQRADGNLSQAA O84957 530 530 -
QRLIAALEKAGWVQAKAA NIFA_KLEOX 483 483 -
QRLIAALEKAGWVQAKAA NIFA_KLEPN 483 483 -
ILLETALAHTNGHKQEAA Q9S0K1 432 432 -
RILRETLTRHRWNKSRAA Q9K559 441 441 -
RILRETLTRHRWNKSRAA Q9REL8 441 441 -
DRLIEAMEKAGWVQAKAA NIFA_RHIET 543 543 -
DRLIEAMEKAGWVQAKAA Q52834 543 543 -
GLIQQALDDANGIVARAA Q9EYT7 444 444 -
ERLEQAMATAGWVQAKAA NIFA_RHILT 312 312 -
RIIMEVLEQQEGNRTRTA ATOC_ECOLI 420 420 -
EWILDALQRHRFRRGEAA Y4PA_RHISN 565 565 -
DLIIGTLSHCLGNRTHAA Q9RMT0 452 452 -
ERVIAALEQAGWVQAKAA NIFA_AZOVI 481 481 -
DRLISALEEAGWNQAKAA NIFA_RHIME 500 500 -
EAILNALRVTNNNRTKAA Q9K633 522 522 -
NIIRSAMDKSQQNVSEAA Q43965 523 523 -
RLLQEAVRRASGNLAAAA Q9ZNN9 524 524 -
EQLLQAMERSGWVQAKAA NIFA_AZOCA 574 574 -
GLLQEAVRRASGNLAAAA Q9S150 541 541 -
IMIETALKHTAGRRRDAA Q9HU59 429 429 -
TLMHRAMEQADHNVSRAA Q9R6Q4 528 528 -
DRLIKAMERAGWVQAKAA NIFA_RHILE 478 478 -
RYLVAAMKQAGGVKTRAA Q50904 422 422 -
QRVIAALEKTGWVQAKAA NIFA_ENTAG 477 477 -
EYIERVLEVCGNNVSKAA O86183 414 414 -
ALIKVALKHTHGRKNDAA O86057 458 458 -
QLLLDALIRHRWKPADAA O87788 574 574 -
ELIVEALKLHHGNMTEAA VNFA_AZOVI 480 480 -
DALLDALVRHRWKPMAAA Q9HWN4 581 581 -
TLLDVALRLTQGRRAEAA Q9PCD3 436 436 -
EMIVEALKTTQGNIGQAA Q52678 493 493 -
GLMRTAMDRCGQNISQAA Q51994 536 536 -
GLMRTAMDRCGQNISQAA XYLR_PSEPU 521 521 -
VVLIDCLRKNRGNRTRTA Q9AG18 462 462 -
RYITAALNSANNIVSDAA Q9RNP2 333 333 -
QLIEKALEESGFVIKEAA O66591 464 464 -
YVIENVLRKHGHNISKAA ROCR_BACSU 421 421 -
QLIARAYEKASGVKTETA Q9EZZ3 431 431 -
DYLLKAIEDNKHNMSAAA Q9AFA4 280 280 -
EMIVEALKNSSGHIGEAA ANFA_AZOVI 488 488 -
DRLINAMVKAGWVQAKAA Q99329 478 478 -
EKMIRALRDTNGNVTLAA Q9KBU8 586 586 -
DMMIKALESAKGNVSQAA O31551 565 565 -
ERLIWAMEQCGWVQAKAA NIFA_HERSE 501 501 -
EIILQTLEAQKGNKSKTA O83532 411 411 -
DIIEQTLKQTEGNRTQAA Q9JR83 118 118 -
ACIEQALKDQGGNWAQAA Q9K4U8 484 484 -
QVIIDTLRTERGRRKEAA Q51454 425 425 -
QVIIDTLRTERGRRKEAA Q9I4N3 425 425 -
KMISLALERHGGRRKQTA Q9X6S7 380 380 -
QMIIDTLRTERGRRKEAA Q9EYT5 415 415 -
HLIQQTLEKHHFNRTKTA YQIR_BACSU 650 650 -
GVLVETLERNRWNKSKTA Q9R6S1 440 440 -
DIIGQVLKQTEGNRTQAA P72076 535 535 -
KAIHDAMKECGNNKQQAA Q9L4Q6 544 544 -
QAMCDALARYGDNLSVAA Q9I2F9 405 405 -
ERIHQTLVETDFNISETA Q9A7F6 140 140 -
EHIQRVLAEHEGNISATA Q9HVS8 148 148 -
ALILQTLEATHGNRKEAA Q9KFE4 445 445 -
PLLVCVMEQCGGNQSKAS Q9JR42 42 42 -
LIISERLNRFAGDRAKAA Q9KN48 491 491 -
MYIKKALERNKYHVTKTA Q9K5Z1 440 440 -
SVIMNCLERNDGNISRVA HOXA_BRAJA 438 438 -
ELLQAALTQAKFNQKHAA Q9KRG3 291 291 -
NALQDVLARFKGDKTAAA PRPR_SALTY 500 500 -
SLIVKALEYSGGNVVKAS Q46141 607 607 -
QKLVEAMYKASSNQTKAA Q9CHB7 169 169 -
PLLETVMNHVKGNQTKAS Q9HUW0 70 70 -
EAILAMLQRTAWNKRRAA Q9L6Y0 517 517 -
RLIQDCLARHQGSWASAA Q9I0H3 480 480 -
TRLGRALEQRGFEVTLAA Q9ABI0 27 27 -
ELIQKVLLANEYNRTKTA O31393 357 357 -
HLISETLTQADFNWAEAA Q9KMY4 482 482 -
QVIEDALFLFSGRVADAA Q9KLN9 394 394 -
HAITQALERHGVDLARVA O85504 437 437 -
AHIQQIVALHEGNKSAAA Q9KRW2 441 441 -
ALLGDALARHHGNLTQAS Q9I409 388 388 -
QFIEKTLQYFNGNISKTA Q9AGD7 577 577 -
ALLRAAYRFCHGNQVHTA Q9I1C4 319 319 -
QIIENAIELCGGNIPQAA Q9L734 431 431 -
ETIRQALAQNHHNWAACA YGAA_ECOLI 491 491 -

Motif 2 width=21
Element Seqn Id St Int Rpt
AKLLGIHRTTLWRKLKEYGLA O66502 190 -1 -
ADLLGLNRNTLRKKIRELGVS NTRC_RHIME 456 -1 -
ADLLGLNRNTLRKKIRELGVS Q44430 455 -1 -
ADLLGLNRNTLRKKIRDLDIQ NTRC_BRASR 454 -1 -
AELLGIGRTTLYSKLEEYGLK Q00936 414 -1 -
AQLLGLNRNTLRKKIRDLDIQ Q53023 454 -1 -
ARLLGISRRTLYNKLEEYGLL Q9RF09 446 -1 -
AKLLGISRATLYNKMKRYELE Q9K9B0 506 -1 -
AGLLGLSRATLNRKLKRLDLA Q9A2I2 288 -1 -
ADLLGINRNTLRKKITDLDIQ NTRC_RHOCA 429 -1 -
AALLGIHRATLRKKLKEYGLV Q9PBY7 70 -1 -
AQRLGLTFRSMRYRLKKLGID PILR_PSEAE 425 -1 -
AEMLGLSRQSLYVKLRRYGLG Q9JP99 452 -1 -
ARVLGISRPTLAYRLQKYGIT O69184 568 -1 -
AQRLGLSFRSMRYRLKKLGLD Q9RLD0 426 -1 -
ARLLGLTPRQIGYALRKYGIE Q9EYV2 579 -1 -
AEFLGIARSTLYRKMRTLGID Q9EUT8 531 -1 -
ARLLGWGRNTLTRKLKELGIE NTRC_PROVU 451 -1 -
ARTLGFTRRQLALRLEKLEIQ O85963 525 -1 -
AQLLGLNRNTLRKKIRDLDIQ NTRC_AZOBR 455 -1 -
AQLLGLNRNTLRKKIRDLDIQ Q43898 454 -1 -
AQLLGLNRNTLRKKIRDLDIQ Q43912 455 -1 -
AELLGIGRTTLYNKLEEYGLK Q9F5V2 414 -1 -
ARLLGWGRNTLTRKLKELGME NTRC_ECOLI 449 -1 -
ARLLGWGRNTLTRKLKELGME NTRC_SALTY 449 -1 -
ARLLGWGRNTLTRKLKELGME NTRC_KLEPN 449 -1 -
AKLLGYTLRQLDYRIKKYGIE O67661 473 -1 -
ADLLGINRNTLRKKITDLDIR Q53182 427 -1 -
ADLLGINRNTLRKKITDLDIR Q9S2Z8 427 -1 -
ARMLGLTRPQFAYRLKRLRGE Q9F2C0 542 -1 -
AEILGLNRNTLRKKIQDLGVE Q9A7I2 447 -1 -
ARLLGLSRPALAYRLKKIGIE Q06573 542 -1 -
ARLLGLSRPALAYRLKKIGIE Q52169 542 -1 -
ARVLGISRPTLAYRLRKYQIP P72311 568 -1 -
ADMLGMRRTTLVEKMRKYNMQ O30662 467 -1 -
ADMLGMRRTTLVEKMRKYNMQ Q9KQ66 467 -1 -
ATMLGINRGTLRKKLKKYGMG FIS_PASHA 78 -1 -
ATMLGINRGTLRKKLKKYGMG FIS_PASMU 79 -1 -
ANMLGINRGTLRKKLKKYGMG FIS_HAEIN 79 -1 -
ALMLGINRSTLRKKLKKYSMN FIS_BUCAI 78 -1 -
ARLLGLTPRQVGYALRKYGIE NIFA_BRAJA 558 -1 -
ARLLGLTPRQVGYALRKYGIE Q9AMY3 581 -1 -
ARSLGIARATLYRKLKGMEEG Q9F9U3 614 -1 -
AELLSLSRQSLYVKLRKFGLL CRTJ_RHOCA 444 -1 -
AERLRIRRTTLVEKMRKYGMS Q51452 461 -1 -
AERLRIRRTTLVEKMRKYGMS Q51460 461 -1 -
AKLLGLSFRQLRYRMQQLDIR O30349 522 -1 -
ARLLGMHRRSLQRKLTKRPSP Q9PAE0 164 -1 -
ARLLGMTTRQVSYALRKYNIE NIFA_AZOBR 601 -1 -
ARLLGMTTRQVSYALRKYNIE Q9FD94 601 -1 -
ARLLGMTTRQVSYALRKYNIE NIFA_AZOLI 600 -1 -
AKRLGLGRSTLYKKIVALGMR Q9I2A4 449 -1 -
ARLLGMTPRQIAYALQKFEIE NIFA_RHOCA 529 -1 -
ARLLGMTPRQIAYALQKFEIE O52268 558 -1 -
AAKLGITFRALRYKLKKLGME Q9PAH3 477 -1 -
ANILGISIRTLRNKLKEYSDA FLBD_CAUCR 420 -1 -
AHKLGWGRNTLTRKLKELGMA Q56291 443 -1 -
AARLRIPRTTLLGRMRRLGLP Q9I4E2 439 -1 -
ARELGLPRRTLIYRMGRLNIH Q9I362 477 -1 -
ARLLGMTPRQIGYALKKHDIP Q9X6U6 576 -1 -
ARLLGLTRPALAYRLKKIGVD Q52177 542 -1 -
ARLLGLTRPALAYRLKKIGVD Q52200 542 -1 -
ARLLGLTPRQIGYALRRHGIE Q9AQ14 560 -1 -
ADMLGMRRTTLVEKMRKYNLQ Q56708 467 -1 -
ARILGLTPRQIGYALRKNGIS Q9F1E2 557 -1 -
ALMMGINRGTLRKKLKKYGMN FIS_ECOLI 78 -1 -
ALMMGINRGTLRKKLKKYGMN FIS_ERWCA 78 -1 -
ATMMGINRGTLRKKLKKYGMN Q9KV67 78 -1 -
ARILGLTPRQVGYALRRHHIQ NIFA_RHISN 570 -1 -
AEMLSLSRQSLYVKLRKFGLL Q53221 440 -1 -
AEMLSLSRQSLYVKLRKFGLL Q9S301 440 -1 -
AEMLSLSRQSLYVKLRKFGLL Q53224 440 -1 -
AKQLDISVRNLYYKLEKHGID Q9K984 661 -1 -
ASLLGLTYHQLRGMLKKHSIL Q9F4H5 312 -1 -
AKELGLSRGGLRQKLLRFGLE HOXA_ALCEU 460 -1 -
AAELGLSRVGLRAKLDRYGIE HUPR_RHOCA 460 -1 -
ARLLGLTRPQLAYRWKTRGTR O84957 547 -1 -
ARLLGMTPRQVAYRIQIMDIT NIFA_KLEOX 500 -1 -
ARLLGMTPRQVAYRIQIMDIT NIFA_KLEPN 500 -1 -
AKRLGWGRNTLTRKLKELSMD Q9S0K1 449 -1 -
AAELGLSRVGLRAKLDRYGIA Q9K559 458 -1 -
AAELGLSRVGLRAKLDRYGIA Q9REL8 458 -1 -
ARILGLTPRQVGYALRQHRIE NIFA_RHIET 560 -1 -
ARILGLTPRQVGYALRQHRIE Q52834 560 -1 -
AERLRIRRTTLVEKMRKYGMS Q9EYT7 461 -1 -
ARLLGRTPRQVGYSLRRHGIE NIFA_RHILT 329 -1 -
ALMLGISRRALMYKLQEYGID ATOC_ECOLI 437 -1 -
ARYLGISRKTLYNKMRVYGLP Y4PA_RHISN 582 -1 -
ANILGISIRTLRNKLKQYSEE Q9RMT0 469 -1 -
ARLLGMTPRQIAYRIQTLNIH NIFA_AZOVI 498 -1 -
ARILEKTPRQVGYALRRHGVD NIFA_RHIME 517 -1 -
ANLLQISRTSLYEKMKKHRLS Q9K633 539 -1 -
ARMLGISRATLDYRLKKITLG Q43965 540 -1 -
ARALGMTRPQLSYRLSRIRER Q9ZNN9 541 -1 -
ARLLNLTPRQVGYALRKYDID NIFA_AZOCA 591 -1 -
ARALGMTRPQLSYRLSRIRER Q9S150 558 -1 -
AVLLGWGRNTLTRKIKELGMN Q9HU59 446 -1 -
ARILGLTRPALAYRLKKKTGI Q9R6Q4 545 -1 -
ARILGKTPRQVGYALRRHRID NIFA_RHILE 495 -1 -
AELLGLSFRSFRYRLAKHGLT Q50904 439 -1 -
ARLLGMTPRQIAYRIQIMDIN NIFA_ENTAG 494 -1 -
AKLLDISRRQLTKKIAEFGLR O86183 431 -1 -
AVRLGIGRNTITRKIQKLGIG O86057 475 -1 -
ARALGISRATLYRRVHEHRIE O87788 591 -1 -
ATHLGLTARVLGLRMGKYNLN VNFA_AZOVI 497 -1 -
ARELGISRATLYRRVRRHGIR Q9HWN4 598 -1 -
AARLGLGRNTLTRKLGSSQRR Q9PCD3 453 -1 -
AELLQVSRRVLGLRMGRLGID Q52678 510 -1 -
ARLLGLTRPAMAYRLKKLDPS Q51994 553 -1 -
ARLLGLTRPAMAYRLKKLDPS XYLR_PSEPU 538 -1 -
ARELGLRRRTLLYRLARLDIP Q9AG18 479 -1 -
ARLLGLHRTTLIEKMNKYKIS Q9RNP2 350 -1 -
AKKLGMTPRQVSYRIQKYGIK O66591 481 -1 -
AQELGISRQSLQYRLKKFSHS ROCR_BACSU 438 -1 -
ARLLGIKTSALYYKLEKYGFL Q9EZZ3 448 -1 -
ARNLGISRTTLYRLIKKYNLP Q9AFA4 297 -1 -
AKELGLARRMLGVRMERYGIS ANFA_AZOVI 505 -1 -
ARILGKTPRQVGYALRRHRID Q99329 495 -1 -
AKELDMPRSTFYKRLKKYNLS Q9KBU8 603 -1 -
AKISGIPRSTFYKRLKKFNLS O31551 582 -1 -
ARALNISPRQMGYALQKFNIE NIFA_HERSE 518 -1 -
ADVLGIGRKTLYLKLDQYTNT O83532 428 -1 -
AKRLGISFRSMRYRMERLNIG Q9JR83 135 -1 -
ARQLGIDASNLHKLARRLGCK Q9K4U8 501 -1 -
AERLGISPRTLRYKLAQMRDA Q51454 442 -1 -
AERLGISPRTLRYKLAQMRDA Q9I4N3 442 -1 -
AEELKISERTLYRKIKEYGLE Q9X6S7 397 -1 -
AEKLGISPRTLRYKLAQMRDA Q9EYT5 432 -1 -
AKALGVSIRNLYYKMDKYGLA YQIR_BACSU 667 -1 -
AVELGLSRVGLSAKIERYGLE Q9R6S1 457 -1 -
AKRLGISFRSMRYRMERLNID P72076 552 -1 -
AKLLDIPRSTLYYKIKFYDLN Q9L4Q6 561 -1 -
ARMLGVSRPTFYRLLHKHRLR Q9I2F9 422 -1 -
ARRLGMHRRTLARKLEKRRMS Q9A7F6 157 -1 -
ARALGMHRRTLQRKLQKRPVR Q9HVS8 165 -1 -
AKRLQISTRKLRYLLNEKVNT Q9KFE4 462 -1 -
SVMLGLNRNTLRKKLIQHGLL Q9JR42 59 -1 -
AKSLGIPKRTLAYKCLKLEIK Q9KN48 508 -1 -
AEKLGLSRQSLQYRMKRLGIS Q9K5Z1 457 -1 -
ASELGLSRVGLRNKLSRYDLR HOXA_BRAJA 455 -1 -
AQLLGLSYHQFRGMMRKYPQM Q9KRG3 308 -1 -
ARYLGISRTTLWRRLKAGAKD PRPR_SALTY 517 -1 -
SKLIGIGKSTLYRKIKKYELS Q46141 624 -1 -
AKILYVHRNTLINKIKKYEQK Q9CHB7 186 -1 -
SELLGLNRGTLRKKLKQYDLL Q9HUW0 87 -1 -
ATKLRISYKALLYKIKECGII Q9L6Y0 534 -1 -
ARELGLDRANLARLARRLQLR Q9I0H3 497 -1 -
ARRLNMHRRTLQRILAKRAPR Q9ABI0 165 120 -
AKQLNISLRSLYYKLEKYNLA O31393 374 -1 -
ARRLQTDRANLTRLAKRLGIT Q9KMY4 499 -1 -
ANYLQVPRKKLYLRMKKHGLE Q9KLN9 411 -1 -
ADELGVSSTTLWRKMKRLNLR O85504 454 -1 -
ARDLGVARKTLERKYKEWESE Q9KRW2 458 -1 -
SQDLGMAKTTLFDKVKKYGLQ Q9I409 405 -1 -
AKALGIARSTLYRRAAREKRQ Q9AGD7 594 -1 -
ANLLGLSRNVTRTRLIAIGEL Q9I1C4 336 -1 -
AKQLEVSPSTIYRKLQSWNER Q9L734 448 -1 -
ARMLETDVANLHRLAKRLGLK YGAA_ECOLI 508 -1 -