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PR00971

Identifier
RIBOSOMALS10  [View Relations]  [View Alignment]  
Accession
PR00971
No. of Motifs
3
Creation Date
05-OCT-1998  (UPDATE 23-JUN-1999)
Title
Ribosomal protein S10 family signature
Database References

PROSITE; PS00361 RIBOSOMAL_S10
PFAM; PF00338 Ribosomal_S10
INTERPRO; IPR001848
PROTOMAP; 259
Literature References
1. KURLAND, C.G., JORGENSEN, F., RICHTER, A., EHRENBERG, M., BILGIN, N. 
AND ROJAS, A.-M.
IN THE RIBOSOME: STRUCTURE, FUNCTION AND EVOLUTION (ED. W.E.HILL ET AL.)
PP.513-526 (AMERICAN SOCIETY FOR MICROBIOLOGY, WASHINGTON DC).
 
2. MUELLER, F. AND BRIMACOMBE, R.
A new model for the three-dimensional folding of Escherichia coli
16S ribosomal RNA. II. The RNA-protein interaction data.
J.MOL.BIOL. 271(4) 545-565 (1997).
 
3. HERMANN-LE DENMAT, S., SIPICZKI, M. AND THURIAUX, P.
Suppression of Yeast rna polymerase III mutations by the urp2 gene encoding
a protein homologous to the mammalian ribosomal protein S20.
J.MOL.BIOL. 240 1-7 (1994).
 
4. AGAFONOV, D.E., KOLB, V.A. AND SPIRIN, A.S.
Proteins on ribosome surface: measurements of protein exposure by
hot tritium bombardment technique.
PROC.NATL.ACAD.SCI.U.S.A. 94(24) 12892-7 (1997).
 
5. OTAKA, E., SUZUKI, K. AND HASHIMOTO, T.
Examination of protein sequence homologies. VII. The complementary molecular
coevolution of ribosomal proteins equivalent to Escherichia coli L7/L12 and 
L10.
PROTEIN SEQ.DATA ANAL. 3 11-19 (1990).

Documentation
Ribosomes are ribonucleoprotein particles that are the site of protein
synthesis. The structure of the ribosome is well conserved across the
prokaryotic and eukaryotic lineages, reflecting the early origin of their
essential function. They comprise two subunits, which can dissociate on 
heating. In prokaryotes, the small subunit contains a single large RNA 
moeity denoted, according to its sedimentation coefficient, 16S rRNA, and 21 
different ribosomal proteins, designated S1-S21. Eukaryotic small ribosomal
subunits contain 33 proteins, many of which are similar to those found
in prokaryotes. 
 
There are two major tRNA binding sites on the ribosome, termed the A site, 
where incoming aminoacyl-tRNA is bound, and the P site (for peptidyl tRNA), 
where new peptide bonds are formed. The ribosomal proteins catalyse ribosome 
assembly and stabilise the rRNA, tuning the structure of the ribosome for 
optimal function [1]. Evidence suggests that, in prokaryotes, the peptidyl
transferase reaction is performed by the large subunit 23S rRNA, whereas
proteins probably have a greater role in eukaryotic ribosomes. Most of the
proteins lie close to, or on the surface of, the 30S subunit, arranged
peripherally around the rRNA [2]. The small subunit ribosomal proteins can
be categorised as primary binding proteins, which bind directly and
independently to 16S rRNA; secondary binding proteins, which display no
specific affinity for 16S rRNA, but its assembly is contingent upon the
presence of one or more primary binding proteins; and tertiary binding
proteins, which require the presence of one or more secondary binding
proteins and sometimes other tertiary binding proteins.
 
The small ribosomal subunit protein S10 consists of about 100 amino acid
residues. In Escherichia coli, S10 is involved in binding tRNA to the
ribosome, and also operates as a transcriptional elongation factor [3]. 
Experimental evidence [4] has revealed that S10 has virtually no groups
exposed on the ribosomal surface, and is one of the "split proteins": these are a discrete group
that are selectively removed from 30S subunits under low salt conditions 
and are required for the formation of activated 30S reconstitution
intermediate (RI*) particles. S10 belongs to a family of proteins [5] that
includes: eubacterial S10; algal chloroplast S10; cyanelle S10; archae-
bacterial S10; Marchantia polymorpha and Prototheca wickerhamii mito-
chondrial S10; Arabidopsis thaliana mitochondrial S10 (nuclear encoded); 
vertebrate S20; plant S20; and yeast URP2.
 
RIBOSOMALS10 is a 3-element fingerprint that provides a signature for S10
ribosomal proteins. The fingerprint was derived from an initial alignment 
of 26 sequences: the motifs were drawn from short conserved regions spanning
virtually the full alignment length - motif 2 includes most of the central
region encoded by PROSITE pattern RIBOSOMAL_S10 (PS00361). Two iterations 
on OWL30.2 were required to reach convergence, at which point a true set 
comprising 57 sequences was identified. Three partial matches were also
found: two of these (RS20_MAIZE and RS10_DESMO) are fragments, lacking the
portions of sequence bearing motifs 1 and 4 respectively; and AF030961 is
a sequence from Schistosoma mansoni that fails to make a significant match
with motif 1.
 
An update on SPTR37_9f identified a true set of 52 sequences, and 4
partial matches.
Summary Information
  52 codes involving  3 elements
2 codes involving 2 elements
Composite Feature Index
3525252
2022
123
True Positives
O21246        O29324        O52331        O59152        
O66430 O84443 Q03201 Q36552
RR10_CYAPA RR10_GUITH RR10_ODOSI RR10_PORPU
RS10_BACSU RS10_BORBU RS10_ECOLI RS10_HAEIN
RS10_HALHA RS10_HALMA RS10_HELPY RS10_METJA
RS10_METTH RS10_METVA RS10_MYCCA RS10_MYCGE
RS10_MYCHY RS10_MYCLE RS10_MYCPN RS10_MYCTU
RS10_NEIGO RS10_PLARO RS10_PYRWO RS10_RICPR
RS10_SPIPL RS10_STRMU RS10_SULAC RS10_SULSO
RS10_SYNY3 RS10_THEAC RS10_THEMA RS10_THETH
RS10_TREHY RS10_TREPA RS20_ARATH RS20_DROME
RS20_HUMAN RS20_ORYSA RS20_SCHPO RS20_XENLA
RS20_YEAST RT10_ARATH RT10_MARPO RT10_PEA
True Positive Partials
Codes involving 2 elements
O78796 RT10_PROWI
Sequence Titles
O21246      RIBOSOMAL PROTEIN S10 - RECLINOMONAS AMERICANA. 
O29324 SSU RIBOSOMAL PROTEIN S10P (RPS10P) - ARCHAEOGLOBUS FULGIDUS.
O52331 RIBOSOMAL PROTEIN S10 - MYCOPLASMA GALLISEPTICUM.
O59152 102AA LONG HYPOTHETICAL 30S RIBOSOMAL PROTEIN S10 - PYROCOCCUS HORIKOSHII.
O66430 RIBOSOMAL PROTEIN S10 - AQUIFEX AEOLICUS.
O84443 S10 RIBOSOMAL PROTEIN - CHLAMYDIA TRACHOMATIS.
Q03201 HYPOTHETICAL 23.4 KD PROTEIN - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
Q36552 RIBOSOMAL PROTEIN S10 - SOLANUM TUBEROSUM (POTATO).
RR10_CYAPA CYANELLE 30S RIBOSOMAL PROTEIN S10 - CYANOPHORA PARADOXA.
RR10_GUITH CHLOROPLAST 30S RIBOSOMAL PROTEIN S10 - GUILLARDIA THETA (CRYPTOMONAS PHI).
RR10_ODOSI CHLOROPLAST 30S RIBOSOMAL PROTEIN S10 - ODONTELLA SINENSIS.
RR10_PORPU CHLOROPLAST 30S RIBOSOMAL PROTEIN S10 - PORPHYRA PURPUREA.
RS10_BACSU 30S RIBOSOMAL PROTEIN S10 (BS13) - BACILLUS SUBTILIS.
RS10_BORBU 30S RIBOSOMAL PROTEIN S10 - BORRELIA BURGDORFERI (LYME DISEASE SPIROCHETE).
RS10_ECOLI 30S RIBOSOMAL PROTEIN S10 - ESCHERICHIA COLI.
RS10_HAEIN 30S RIBOSOMAL PROTEIN S10 - HAEMOPHILUS INFLUENZAE.
RS10_HALHA 30S RIBOSOMAL PROTEIN S10 - HALOBACTERIUM HALOBIUM.
RS10_HALMA 30S RIBOSOMAL PROTEIN S10 (HMAS10) - HALOARCULA MARISMORTUI (HALOBACTERIUM MARISMORTUI).
RS10_HELPY 30S RIBOSOMAL PROTEIN S10 - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
RS10_METJA 30S RIBOSOMAL PROTEIN S10P - METHANOCOCCUS JANNASCHII.
RS10_METTH 30S RIBOSOMAL PROTEIN S10P - METHANOBACTERIUM THERMOAUTOTROPHICUM.
RS10_METVA 30S RIBOSOMAL PROTEIN S10 - METHANOCOCCUS VANNIELII.
RS10_MYCCA 30S RIBOSOMAL PROTEIN S10 - MYCOPLASMA CAPRICOLUM.
RS10_MYCGE 30S RIBOSOMAL PROTEIN S10 - MYCOPLASMA GENITALIUM.
RS10_MYCHY 30S RIBOSOMAL PROTEIN S10 - MYCOPLASMA HYOPNEUMONIAE.
RS10_MYCLE 30S RIBOSOMAL PROTEIN S10 - MYCOBACTERIUM LEPRAE.
RS10_MYCPN 30S RIBOSOMAL PROTEIN S10 - MYCOPLASMA PNEUMONIAE.
RS10_MYCTU 30S RIBOSOMAL PROTEIN S10 - MYCOBACTERIUM TUBERCULOSIS, AND MYCOBACTERIUM BOVIS.
RS10_NEIGO 30S RIBOSOMAL PROTEIN S10 - NEISSERIA GONORRHOEAE.
RS10_PLARO 30S RIBOSOMAL PROTEIN S10 - PLANOBISPORA ROSEA.
RS10_PYRWO 30S RIBOSOMAL PROTEIN S10 - PYROCOCCUS WOESEI.
RS10_RICPR 30S RIBOSOMAL PROTEIN S10 - RICKETTSIA PROWAZEKII.
RS10_SPIPL 30S RIBOSOMAL PROTEIN S10 - SPIRULINA PLATENSIS.
RS10_STRMU 30S RIBOSOMAL PROTEIN S10 - STREPTOCOCCUS MUTANS.
RS10_SULAC 30S RIBOSOMAL PROTEIN S10 - SULFOLOBUS ACIDOCALDARIUS.
RS10_SULSO 30S RIBOSOMAL PROTEIN S10P - SULFOLOBUS SOLFATARICUS.
RS10_SYNY3 30S RIBOSOMAL PROTEIN S10 - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
RS10_THEAC 30S RIBOSOMAL PROTEIN S10 - THERMOPLASMA ACIDOPHILUM.
RS10_THEMA 30S RIBOSOMAL PROTEIN S10 - THERMOTOGA MARITIMA.
RS10_THETH 30S RIBOSOMAL PROTEIN S10 - THERMUS AQUATICUS (SUBSP. THERMOPHILUS).
RS10_TREHY 30S RIBOSOMAL PROTEIN S10 - TREPONEMA HYODYSENTERIAE (SERPULINA HYODYSENTERIAE).
RS10_TREPA 30S RIBOSOMAL PROTEIN S10 - TREPONEMA PALLIDUM.
RS20_ARATH 40S RIBOSOMAL PROTEIN S20 (S22) - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
RS20_DROME 40S RIBOSOMAL PROTEIN S20 - DROSOPHILA MELANOGASTER (FRUIT FLY).
RS20_HUMAN 40S RIBOSOMAL PROTEIN S20 - HOMO SAPIENS (HUMAN), AND RATTUS NORVEGICUS (RAT).
RS20_ORYSA 40S RIBOSOMAL PROTEIN S20 - ORYZA SATIVA (RICE).
RS20_SCHPO 40S RIBOSOMAL PROTEIN S20 - SCHIZOSACCHAROMYCES POMBE (FISSION YEAST).
RS20_XENLA 40S RIBOSOMAL PROTEIN S20 (S22) - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
RS20_YEAST 40S RIBOSOMAL PROTEIN S20 - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
RT10_ARATH 40S RIBOSOMAL PROTEIN S10, MITOCHONDRIAL PRECURSOR - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
RT10_MARPO MITOCHONDRIAL RIBOSOMAL PROTEIN S10 - MARCHANTIA POLYMORPHA (LIVERWORT).
RT10_PEA MITOCHONDRIAL RIBOSOMAL PROTEIN S10 - PISUM SATIVUM (GARDEN PEA).

O78796 MITOCHONDRIAL RIBOSOMAL PROTEIN S10 - PYLAIELLA LITTORALIS.
RT10_PROWI MITOCHONDRIAL RIBOSOMAL PROTEIN S10 - PROTOTHECA WICKERHAMII.
Scan History
OWL30_2    2  1800 NSINGLE    
SPTR37_9f 1 300 NSINGLE
Initial Motifs
Motif 1  width=14
Element Seqn Id St Int Rpt
KARIKLSSTKHEEL RS10_METVA 3 3 -
KIRIVIRSFDHPFL RT10_PEA 4 4 -
ELKIKLESYDSTLL RS10_MYCPN 11 11 -
RARIKLSSTDHKVL RS10_METJA 8 8 -
RIRITLSSKSVKNL RS20_ORYSA 17 17 -
RIRITLTSRNVKSL RS20_HUMAN 19 19 -
RIRITLTSRNVKSL RS20_XENLA 19 19 -
KIRIVIRSFDHPFL MTPSRPS 4 4 -
KIGIVIRSFDHPFL S55877 4 4 -
KIGIVIRSFDHPFL MTSTRPS10 23 23 -
KIRIKLRAYDHRLL AE0006692 5 5 -
KICIVIRSFDHPFL S55879 4 4 -
KIRITLTSTKVKQL RSU2_YEAST 21 21 -
KAKIKISPDNVRPL RT10_ARATH 93 93 -
QARVRLAGTSPEDL RS10_HALMA 3 3 -
RIRITLTSRNVRSL RS20_DROME 21 21 -
KICIVIKSFENQRS RT10_MARPO 4 4 -
QARVRLAGVDPDDL RS10_HALHA 3 3 -
KIRIRLKAYDHRIL RS10_BACSU 4 4 -
KIRIKLKAYNSSLL RR10_PORPU 8 8 -
KIRIKLRGFDHKTL RS10_THETH 2 2 -
KIRVRLESFNHELL RR10_ODOSI 8 8 -
RIRIRLKAFDHRLI RS10_HAEIN 20 20 -
RIRIRLKAFDHRLI RS10_ECOLI 5 5 -
KARIRLWSTNVENL RS10_SULSO 4 4 -
ELKIKLESYDSTLL RS10_MYCGE 9 9 -

Motif 2 width=16
Element Seqn Id St Int Rpt
LPLPTKKEVITIIRSP RS10_MYCPN 46 21 -
VRLPTKVLKISTRKTP RSU2_YEAST 56 21 -
IGLPESRVLYTVLRSP S55879 31 13 -
IGLPESRVLYTVLRSP MTPSRPS 31 13 -
IGLPESRVLYTVLRSP S55877 31 13 -
IGLPESRVLYTVLRSP MTSTRPS10 50 13 -
IPLPTRKRKWCVLRSP AE0006692 40 21 -
IPLPTEKSVYTILLAV RS10_BACSU 39 21 -
IPLPTKRRIYCVLRSP RR10_PORPU 43 21 -
IPLPTRVRRFTVIRGP RS10_THETH 37 21 -
VSLPTDKRIYCVLRSP RR10_ODOSI 43 21 -
IPLPTRKERFTVLISP RS10_HAEIN 55 21 -
IPLPTRKERFTVLISP RS10_ECOLI 40 21 -
IPLPTSKLEVPIMRLP RS10_SULSO 39 21 -
LPLPTKKEVITIIRSP RS10_MYCGE 44 21 -
IPLPTKSLKITTRKST RS10_METVA 38 21 -
IGLPESRVLYTVLRSP RT10_PEA 31 13 -
IPLPTKVLRVVTRKSP RS10_METJA 43 21 -
VRMPTKVLHITTRKSP RS20_ORYSA 52 21 -
VRMPTKTLRITTRKTP RS20_HUMAN 54 21 -
VRMPTKTLRITTRKTP RS20_XENLA 54 21 -
VPLPTKTLEVPSRKSP RS10_HALHA 38 21 -
IGLPKKQTLYTVLRSP RT10_MARPO 26 8 -
VRMPTKTLRITTRKTP RS20_DROME 56 21 -
VPLPTKTLEVPSRKSP RS10_HALMA 38 21 -
VAMPDTRTLYTVLRSP RT10_ARATH 154 47 -

Motif 3 width=15
Element Seqn Id St Int Rpt
TWDRFQMRIHKRLID RS20_XENLA 76 6 -
TWEHWEMRVHKRLID RS10_HALHA 60 6 -
SREQFEMRIHKQLLV RT10_MARPO 47 5 -
TWDRFQMRIHKRIID RS20_DROME 78 6 -
TWEHWEMRVHKRLID RS10_HALMA 60 6 -
SREQFEMRFKKRFLV RT10_ARATH 175 5 -
SREQFEMRTHKRLID RS10_BACSU 60 5 -
SREHFEIREFSRILD AE0006692 61 5 -
SREQFFMKIKKEFLV MTSTRPS10 71 5 -
SREQFFMKIKKEFLV S55877 52 5 -
SREQFEMEIKKKYLV MTPSRPS 52 5 -
SREQFEMEIKKKYLV S55879 52 5 -
SREHFEIRSHRRIID RR10_PORPU 64 5 -
SREHFELRTHNRLVD RS10_THETH 58 5 -
SREHFELRVHKRVIE RR10_ODOSI 64 5 -
ARDQYEIRTHKRLVD RS10_HAEIN 76 5 -
ARDQYEIRTHLRLVD RS10_ECOLI 61 5 -
KWEKWEMRVHKRLID RS10_SULSO 61 6 -
SREQFEKNTHKRLMI RS10_MYCGE 65 5 -
SFDRWTMRVHKRVID RS10_METVA 60 6 -
SREQFEMEIKKKYLV RT10_PEA 52 5 -
SREQFEKNRHKRLMI RS10_MYCPN 67 5 -
TWETYEMRIHKRYID RSU2_YEAST 78 6 -
TFDRWTMKIHKRLID RS10_METJA 65 6 -
TWDRFEMRVHKRVID RS20_ORYSA 74 6 -
TWDRFQMRIHKRLID RS20_HUMAN 76 6 -
Final Motifs
Motif 1  width=14
Element Seqn Id St Int Rpt
KIRIKLKAYDHELL RS10_THEMA 5 5 -
KIRVRLFSFDVKIL RS10_BORBU 6 6 -
KIRIRLKAFDRRLL RS10_SYNY3 8 8 -
KIRIRLKAFDRRLL RS10_SPIPL 8 8 -
KIRIRLKAYDHEVI RS10_PLARO 5 5 -
KIRIRLKAYDHEAI RS10_MYCLE 5 5 -
KIRIRLKAYDHEAI RS10_MYCTU 5 5 -
KIRIRLKAYDHRIL RS10_BACSU 4 4 -
KIRIQLRSYDSSLL RR10_CYAPA 8 8 -
KIRIRLKGYETNLL RR10_GUITH 5 5 -
KIRLKLKAYDHRVL RS10_HELPY 3 3 -
KIRIRLKAYEHRTL RS10_STRMU 5 5 -
RIRIRLKGFDQGQL O84443 7 7 -
KIRIKLKAYNSSLL RR10_PORPU 8 8 -
EIKIKLKSYDSRLL O52331 24 24 -
KIKIRLKSFDHRSL RS10_RICPR 4 4 -
KIRVKLKAFDIELI RS10_TREHY 5 5 -
KIRIKLRGFDHKTL RS10_THETH 2 2 -
KIRIKLRAYDHRLL O66430 5 5 -
KIRVRLESFNHELL RR10_ODOSI 8 8 -
RIRIRLKAFDHRLI RS10_HAEIN 20 20 -
KIRIRLKAYDYALI RS10_NEIGO 5 5 -
KMRIKLKGYDHAIV RS10_MYCCA 5 5 -
KARIKLASTNVRSL O59152 3 3 -
SIKIKLKSFDHRQI RS10_MYCHY 22 22 -
RIRIRLKAFDHRLI RS10_ECOLI 5 5 -
RIRVKLCGFDVELV RS10_TREPA 5 5 -
KARIKIASTNVRSL RS10_PYRWO 3 3 -
KARIKLTGTDPEKL RS10_METTH 3 3 -
KARIRLWSTNVENL RS10_SULSO 4 4 -
RIRITLTSRNVRNL RS20_SCHPO 19 19 -
KARISLSGTEHRVV RS10_THEAC 5 5 -
KARIKLSGLNPREL O29324 7 7 -
ELKIKLESYDSTLL RS10_MYCGE 9 9 -
KARIKLSSTKHEEL RS10_METVA 3 3 -
KIRIVIRSFDHPFL RT10_PEA 4 4 -
KIRITLSSKNVKNL RS20_ARATH 17 17 -
ELKIKLESYDSTLL RS10_MYCPN 11 11 -
RARIKLSSTDHKVL RS10_METJA 8 8 -
RIRITLSSKSVKNL RS20_ORYSA 17 17 -
KIRITLTSTKVKQL RS20_YEAST 21 21 -
KARIRLWSSNIDSL RS10_SULAC 4 4 -
RIRITLTSRNVKSL RS20_HUMAN 19 19 -
RIRITLTSRNVKSL RS20_XENLA 19 19 -
QARVRLAGVDPDDL RS10_HALHA 3 3 -
KICIVIKSFENQRS RT10_MARPO 4 4 -
RIRITLTSRNVRSL RS20_DROME 21 21 -
VADIQLRSYDNENL Q03201 42 42 -
QARVRLAGTSPEDL RS10_HALMA 3 3 -
KCSLHLKSFDLDVL O21246 5 5 -
KIGIVIRSFDHPFL Q36552 23 23 -
KAKIKISPDNVRPL RT10_ARATH 93 93 -

Motif 2 width=16
Element Seqn Id St Int Rpt
IPLPTERTLYCVLRSP RS10_THEMA 40 21 -
IPLPTKIKKYTVLRSP RS10_BORBU 41 21 -
IPLPTKRKIYCVLRSP RS10_SYNY3 43 21 -
IPLPTKRRIYCVLRSP RS10_SPIPL 43 21 -
VPLPTEKNVYCVIRSP RS10_PLARO 40 21 -
VPLPTEKNVYCVIRSP RS10_MYCLE 40 21 -
VPLPTEKNVYCVIRSP RS10_MYCTU 40 21 -
IPLPTEKSVYTILLAV RS10_BACSU 39 21 -
IPLPTKKKIYCVLRSP RR10_CYAPA 43 21 -
IPLPTRRKIYCVLRSP RR10_GUITH 40 21 -
IPLPTKNKRYTVLRSP RS10_HELPY 38 21 -
VPLPTERSLYTVIRAT RS10_STRMU 40 21 -
IPLPTKREVYTVLRSP O84443 42 21 -
IPLPTKRRIYCVLRSP RR10_PORPU 43 21 -
IPLPTKKEVFTIIRSP O52331 59 21 -
IPLPRKIERFTVNRSP RS10_RICPR 39 21 -
IPLPTSIRKVTVIRSP RS10_TREHY 40 21 -
IPLPTRVRRFTVIRGP RS10_THETH 37 21 -
IPLPTRKRKWCVLRSP O66430 40 21 -
VSLPTDKRIYCVLRSP RR10_ODOSI 43 21 -
IPLPTRKERFTVLISP RS10_HAEIN 55 21 -
IPLPTKIERFNILRSP RS10_NEIGO 40 21 -
IPLPTEKQVITILRAV RS10_MYCCA 40 21 -
IPLPTKRIRIVTRKSP O59152 38 21 -
VPLPTSRAIYTILRSV RS10_MYCHY 57 21 -
IPLPTRKERFTVLISP RS10_ECOLI 40 21 -
IPLPTRMHKFTVLRSP RS10_TREPA 40 21 -
IPLPTKRIRITTRKSP RS10_PYRWO 38 21 -
IPLPTKRLVVPTRKSP RS10_METTH 38 21 -
IPLPTSKLEVPIMRLP RS10_SULSO 39 21 -
VRLPTKILKITTRKTP RS20_SCHPO 54 21 -
MPLPTKRLVVPVRKSP RS10_THEAC 40 21 -
VPLPTRRMVVPVRKAP O29324 42 21 -
LPLPTKKEVITIIRSP RS10_MYCGE 44 21 -
IPLPTKSLKITTRKST RS10_METVA 38 21 -
IGLPESRVLYTVLRSP RT10_PEA 31 13 -
VRMPTKVLKITTRKAP RS20_ARATH 52 21 -
LPLPTKKEVITIIRSP RS10_MYCPN 46 21 -
IPLPTKVLRVVTRKSP RS10_METJA 43 21 -
VRMPTKVLHITTRKSP RS20_ORYSA 52 21 -
VRLPTKVLKISTRKTP RS20_YEAST 56 21 -
IPLPTTRMEVPVMRLP RS10_SULAC 39 21 -
VRMPTKTLRITTRKTP RS20_HUMAN 54 21 -
VRMPTKTLRITTRKTP RS20_XENLA 54 21 -
VPLPTKTLEVPSRKSP RS10_HALHA 38 21 -
IGLPKKQTLYTVLRSP RT10_MARPO 26 8 -
VRMPTKTLRITTRKTP RS20_DROME 56 21 -
KPLPTRRERWTVIKSP Q03201 77 21 -
VPLPTKTLEVPSRKSP RS10_HALMA 38 21 -
INLPTKIKKITVLRSP O21246 41 22 -
IGLPESRVLYTVLRSP Q36552 50 13 -
VAMPDTRTLYTVLRSP RT10_ARATH 154 47 -

Motif 3 width=15
Element Seqn Id St Int Rpt
SREHFEKRVHKRLID RS10_THEMA 61 5 -
SREQFEMRTHKRLID RS10_BORBU 62 5 -
SREHFETRTHRRIID RS10_SYNY3 64 5 -
SREHFETRTHRRIID RS10_SPIPL 64 5 -
SREHFEMRTHKRLID RS10_PLARO 61 5 -
SREHFEMRTHKRLID RS10_MYCLE 61 5 -
SREHFEMRTHKRLID RS10_MYCTU 61 5 -
SREQFEMRTHKRLID RS10_BACSU 60 5 -
SREHFEIRVHRRIID RR10_CYAPA 64 5 -
SREHFETRIHKRVID RR10_GUITH 61 5 -
SREQFEIRVYSRLID RS10_HELPY 59 5 -
SREQFEMRTHKRLID RS10_STRMU 61 5 -
SREQFEIRTHKRLID O84443 63 5 -
SREHFEIRSHRRIID RR10_PORPU 64 5 -
SREQFERRTHKRLII O52331 80 5 -
SREQFEIRKHKRLLV RS10_RICPR 60 5 -
SREQFEMRIYKRLID RS10_TREHY 61 5 -
SREHFELRTHNRLVD RS10_THETH 58 5 -
SREHFEIREFSRILD O66430 61 5 -
SREHFELRVHKRVIE RR10_ODOSI 64 5 -
ARDQYEIRTHKRLVD RS10_HAEIN 76 5 -
SREQLEIRTHLRLMD RS10_NEIGO 61 5 -
SREQFEMRTHKRLLE RS10_MYCCA 61 5 -
TFDRWELRIHKRLID O59152 60 6 -
SREQFESRTHKRLVI RS10_MYCHY 78 5 -
ARDQYEIRTHLRLVD RS10_ECOLI 61 5 -
SREQFEMRTHKRLID RS10_TREPA 61 5 -
TFDRWELRVHKRLID RS10_PYRWO 60 6 -
TWEKWEMRIHKRLVG RS10_METTH 60 6 -
KWEKWEMRVHKRLID RS10_SULSO 61 6 -
TWETYEMRIHKRLID RS20_SCHPO 76 6 -
TWDHWEMRIHKRLID RS10_THEAC 62 6 -
TWDHWEMRVHKRLID O29324 64 6 -
SREQFEKNTHKRLMI RS10_MYCGE 65 5 -
SFDRWTMRVHKRVID RS10_METVA 60 6 -
SREQFEMEIKKKYLV RT10_PEA 52 5 -
TWDRFELRVHKRVID RS20_ARATH 74 6 -
SREQFEKNRHKRLMI RS10_MYCPN 67 5 -
TFDRWTMKIHKRLID RS10_METJA 65 6 -
TWDRFEMRVHKRVID RS20_ORYSA 74 6 -
TWETYEMRIHKRYID RS20_YEAST 78 6 -
KWEHWEMKVHKRIID RS10_SULAC 61 6 -
TWDRFQMRIHKRLID RS20_HUMAN 76 6 -
TWDRFQMRIHKRLID RS20_XENLA 76 6 -
TWEHWEMRVHKRLID RS10_HALHA 60 6 -
SREQFEMRIHKQLLV RT10_MARPO 47 5 -
TWDRFQMRIHKRIID RS20_DROME 78 6 -
SKENFERHTHKRLIR Q03201 98 5 -
TWEHWEMRVHKRLID RS10_HALMA 60 6 -
SREQFEIRTYTKTIQ O21246 62 5 -
SREQFFMKIKKEFLV Q36552 71 5 -
SREQFEMRFKKRFLV RT10_ARATH 175 5 -