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PR00702

Identifier
ACRIFLAVINRP  [View Relations]  [View Alignment]  
Accession
PR00702
No. of Motifs
9
Creation Date
01-JUN-1996  (UPDATE 08-JUN-1999)
Title
Acriflavin resistance protein family signature
Database References

PFAM; PF00873 ACR_tran
INTERPRO; IPR001036
Literature References
1. MA, D., COOK, D.N., ALBERTI, M., PON, N.G., NIKAIDO, H. AND HEARST, J.E.
Genes acrA and acrB encode a stress-induced efflux system of 
Escherichia coli.
MOL.MICROBIOL. 16(1) 45-55 (1995).
 
2. MA, D., COOK, D.N., ALBERTI, M., PON, N.G., NIKAIDO, H. AND HEARST, J.E.
Molecular cloning and characterization of acrA and acrE genes of
Escherichia coli.
J.BACTERIOL. 175(19) 6299-6313 (1993).

Documentation
The E.coli acrA and acrB genes encode a multi-drug efflux system that is
believed to protect the bacterium against hydrophobic inhibitors [1]. 
Sequence analysis of acrA reveals the presence of two open reading frames,
the second of which encodes a large transmembrane protein [2]. The protein
contains 12 hydrophobic, putative transmembrane domains. Proteins belonging
to this family include the P.aeruginosa multidrug resistance protein mexB, 
A.eutrophus cation efflux system protein czcA, and various R.meliloti
nodulation proteins.
 
ACRIFLAVINRP is a 9-element fingerprint that provides a signature for 
members of the acriflavin resistance protein family. The fingerprint was
derived from an initial alignment of 10 sequences: the motifs were largely
drawn from conserved hydrophobic regions and span virtually the full
alignment length - motifs 1 and 2 lie in the N-terminal portion of the
alignment, and motifs 3-9 in the C-terminal portion. Two iterations on
OWL29.3 were required to reach convergence, at which point a true set
comprising 16 sequences was identified. Several partial matches were also
found, all of which are acriflavin resistance protein homologues.
 
An update on SPTR37_9f identified a true set of 20 sequences, and 20
partial matches.
Summary Information
  20 codes involving  9 elements
1 codes involving 8 elements
0 codes involving 7 elements
1 codes involving 6 elements
7 codes involving 5 elements
4 codes involving 4 elements
3 codes involving 3 elements
4 codes involving 2 elements
Composite Feature Index
9202020202020202020
8111110111
7000000000
6111110100
5154673630
4124440100
3022130100
2311010101
123456789
True Positives
ACRB_ECOLI    ACRD_ECOLI    ACRF_ECOLI    MEXB_PSEAE    
O06471 O25328 O31100 O52248
O66977 O68962 O87936 P73998
P95422 Q51073 Q51396 Q55584
Y895_HAEIN YEGN_ECOLI YEGO_ECOLI YHIV_ECOLI
True Positive Partials
Codes involving 8 elements
O68441
Codes involving 6 elements
P74461
Codes involving 5 elements
NOLH_RHIME O25622 O31501 O51165
O66770 P74693 Q55935
Codes involving 4 elements
CZCA_ALCEU CZCA_ALCSP HELA_LEGPN O69238
Codes involving 3 elements
O25887 O66916 O67202
Codes involving 2 elements
NOLG_RHIME O29039 O70246 Q12252
Sequence Titles
ACRB_ECOLI  ACRIFLAVIN RESISTANCE PROTEIN B - ESCHERICHIA COLI. 
ACRD_ECOLI ACRIFLAVIN RESISTANCE PROTEIN D - ESCHERICHIA COLI.
ACRF_ECOLI ACRIFLAVIN RESISTANCE PROTEIN F (ENVD PROTEIN) - ESCHERICHIA COLI.
MEXB_PSEAE MULTIDRUG RESISTANCE PROTEIN MEXB (MULTIDRUG-EFFLUX TRANSPORTER MEXB) - PSEUDOMONAS AERUGINOSA.
O06471 CEOB - BURKHOLDERIA CEPACIA (PSEUDOMONAS CEPACIA).
O25328 ACRIFLAVINE RESISTANCE PROTEIN (ACRB) - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
O31100 INNER MEMBRANE TRANSPORTER PROTEIN - PSEUDOMONAS PUTIDA.
O52248 PUTATIVE EFFLUX PUMP TTGB - PSEUDOMONAS PUTIDA.
O66977 CATION EFFLUX (ACRB/ACRD/ACRF FAMILY) - AQUIFEX AEOLICUS.
O68962 RND PUMP PROTEIN - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
O87936 PUTATIVE TRANSPORTER AMRB - BURKHOLDERIA PSEUDOMALLAI (PSEUDOMONAS PSEUDOMALLAI).
P73998 ACRIFLAVIN RESISTANCE PROTEIN - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
P95422 MEXE, MEXF & OPRN GENES - PSEUDOMONAS AERUGINOSA.
Q51073 RND PROTEIN - NEISSERIA GONORRHOEAE.
Q51396 RND FAMILY EXPORTER MEXD - PSEUDOMONAS AERUGINOSA.
Q55584 ACRIFLAVIN RESISTANCE PROTEIN - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
Y895_HAEIN HYPOTHETICAL PROTEIN HI0895 - HAEMOPHILUS INFLUENZAE.
YEGN_ECOLI HYPOTHETICAL 112.1 KD PROTEIN IN ALKA-BAES INTERGENIC REGION - ESCHERICHIA COLI.
YEGO_ECOLI HYPOTHETICAL 111.0 KD PROTEIN IN ALKA-BAES INTERGENIC REGION - ESCHERICHIA COLI.
YHIV_ECOLI HYPOTHETICAL 111.5 KD PROTEIN IN HDED-GADA INTERGENIC REGION - ESCHERICHIA COLI.

O68441 TRANSMEMBRANE EFFLUX PUMP PROTEIN - AGROBACTERIUM TUMEFACIENS.

P74461 CATION EFFLUX SYSTEM PROTEIN CZCA - SYNECHOCYSTIS SP. (STRAIN PCC 6803).

NOLH_RHIME NODULATION PROTEIN NOLH PRECURSOR - RHIZOBIUM MELILOTI.
O25622 CATION EFFLUX SYSTEM PROTEIN (CZCA) - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
O31501 YERP PROTEIN - BACILLUS SUBTILIS.
O51165 ACRIFLAVINE RESISTANCE PROTEIN (ACRB) - BORRELIA BURGDORFERI (LYME DISEASE SPIROCHETE).
O66770 CATION EFFLUX SYSTEM (ACRB/ACRD/ACRF FAMILY) - AQUIFEX AEOLICUS.
P74693 ACRIFLAVINE RESISTANCE PROTEIN - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
Q55935 CATION EFFLUX SYSTEM PROTEIN - SYNECHOCYSTIS SP. (STRAIN PCC 6803).

CZCA_ALCEU COBALT-ZINC-CADMIUM RESISTANCE PROTEIN CZCA (CATION EFFLUX SYSTEM PROTEIN CZCA) - ALCALIGENES EUTROPHUS.
CZCA_ALCSP CATION EFFLUX SYSTEM PROTEIN CZCA - ALCALIGENES SP. (STRAIN CT14).
HELA_LEGPN HELA PROTEIN - LEGIONELLA PNEUMOPHILA.
O69238 RAGC - BRADYRHIZOBIUM JAPONICUM.

O25887 CATION EFFLUX SYSTEM PROTEIN (CZCA) - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
O66916 CATION EFFLUX SYSTEM (ACRB/ACRD/ACRF FAMILY) - AQUIFEX AEOLICUS.
O67202 CATION EFFLUX SYSTEM (ACRB/ACRD/ACRF FAMILY) - AQUIFEX AEOLICUS.

NOLG_RHIME NODULATION PROTEIN NOLG PRECURSOR - RHIZOBIUM MELILOTI.
O29039 CONSERVED HYPOTHETICAL PROTEIN - ARCHAEOGLOBUS FULGIDUS.
O70246 PUTATIVE NEURONAL CELL ADHESION MOLECULE (PUNC) - MUS MUSCULUS (MOUSE).
Q12252 ORF YOL084W FROM CHROMOSOME XV - SACCHAROMYCES CEREVISIAE (BAKER'S YEAST).
Scan History
OWL29_3    2  100  NSINGLE    
SPTR37_9f 3 100 NSINGLE
Initial Motifs
Motif 1  width=25
Element Seqn Id St Int Rpt
RPIFAWVLAILLCLTGTLAIFSLPV ACRD_ECOLI 8 8 -
RPVFAWVLAIIMMLAGGLAIMNLPV YHIV_ECOLI 8 8 -
RPIFAWVIALVIMLAGGLSILSLPV MEXB_PSEAE 8 8 -
RPIFAWVIAIIIMLAGGLAILKLPV ACRB_ECOLI 8 8 -
RPIFAWVLAIILMMAGALAILQLPV ACRF_ECOLI 8 8 -
RPVATILLSVAITLCGILGFRMLPV D908458 10 10 -
RPIFAWVLAILLCLTGTLAIFSLPV D908756 8 8 -
RPVATILLSVAITLCGILGFRMLPV D908461 10 10 -
RPVATTLLMVAILLAGIIGYRALPV D908457 19 19 -
RPVLAVSISLLMIILGLQAISKLAV H64100 16 16 -

Motif 2 width=19
Element Seqn Id St Int Rpt
PDLAPPNVRVTANYPGASA ACRD_ECOLI 36 3 -
PQIAPPTITVSATYPGADA YHIV_ECOLI 36 3 -
PAIAPPAIAVQVSYPGASA MEXB_PSEAE 36 3 -
PTIAPPAVTISASYPGADA ACRB_ECOLI 36 3 -
PTIAPPAVSVSANYPGADA ACRF_ECOLI 36 3 -
PDLAPPNVRVTANYPGASA D908756 36 3 -
PQVDFPVIIVSASLPGASP D908458 38 3 -
PQVDFPVIIVSASLPGASP D908461 38 3 -
PEVDYPTIQVVTLYPGASP D908457 47 3 -
PKMTTTVITVSTAYPGADA H64100 44 3 -

Motif 3 width=24
Element Seqn Id St Int Rpt
SLEEVEQTLIISVALVILVVFLFL D908458 330 273 -
SIEDVVKTLLEAIALVFLVMYLFL D908756 336 281 -
SLEEVEQTLIISVALVILVVFLFL D908461 330 273 -
SVDDTQFELMMAIALVVMIIYLFL D908457 339 273 -
SIHEVIKTIGEATLIVLVVILMFI H64100 334 271 -
SIHEVVKTLFEAIMLVFLVMYLFL ACRF_ECOLI 336 281 -
SIHEVVKTLVEAIILVFLVMYLFL ACRB_ECOLI 336 281 -
SIHEVVKTLGEAILLVFLVMYLFL MEXB_PSEAE 336 281 -
SIQEVFKTLVEAIILVFLVMYLFL YHIV_ECOLI 336 281 -
SIEDVVKTLLEAIALVFLVMYLFL ACRD_ECOLI 336 281 -

Motif 4 width=22
Element Seqn Id St Int Rpt
RAILIPILAIPISLIGVLMLLQ H64100 361 3 -
RATLIPTIAVPVVLLGTFAVLA ACRB_ECOLI 363 3 -
RATLIPTIAVPVVLLGTFGVLA MEXB_PSEAE 363 3 -
RATIIPTIAVPVVILGTFAILS YHIV_ECOLI 363 3 -
RATLIPTIAEPVVLMGTFSVLY ACRD_ECOLI 363 3 -
RATLIPTIAVPVVLLGTFAILA ACRF_ECOLI 363 3 -
RATLIPTIAVPVVLMGTFSVLY D908756 363 3 -
RATIIPAVSVPVSLIGTFAAMY D908458 357 3 -
RATIIPAVSVPVSLIGTFAAMY D908461 357 3 -
PATIIPGVAVPLSLIGTFAVMV D908457 366 3 -

Motif 5 width=25
Element Seqn Id St Int Rpt
NTLTMFGMVLAIGLLVDDAIVVVEN ACRF_ECOLI 391 6 -
NLMTLLALILAIGLVVDDAIVVLEN H64100 389 6 -
NNLTLMALTIATGFVVDDAIVVIEN D908457 394 6 -
NNLSLMALTIATGFVVDDAIVVLEN D908461 385 6 -
NNLSLMALTIATGFVVDDAIVVLEN D908458 385 6 -
NTLTMFAMVLAIGLLVDDAIVVVEN D908756 391 6 -
NTLTMFAMVLAIGLLVDDAIVVVEN ACRD_ECOLI 391 6 -
NTLTMFGMVLAIGLLVDDAIVVVEN YHIV_ECOLI 391 6 -
NTLTMFGMVLAIGLLVDDAIVVVEN MEXB_PSEAE 391 6 -
NTLTMFGMVLAIGLLVDDAIVVVEN ACRB_ECOLI 391 6 -

Motif 6 width=24
Element Seqn Id St Int Rpt
IAMVLSAVFVPMAFFGPTTGAIYR ACRD_ECOLI 445 29 -
IAVVLSAVFMPMAFMSGATGEIYR YHIV_ECOLI 445 29 -
IAMVLSAVFLPMAFFGGSTGVIYR MEXB_PSEAE 445 29 -
IAMVLSAVFVPMAFFGGSTGAIYR ACRB_ECOLI 445 29 -
IAMVLSAVFIPMAFFGGSTGAIYR ACRF_ECOLI 445 29 -
IAMVLSAVFVPMAFFGGTTGAIYR D908756 445 29 -
MSLSLVAVFLPLLLMGGLPGRLLR D908458 438 28 -
MSLSLVAVFLPLLLMGGLPGRLLR D908461 438 28 -
LTFSLIAVLIPLLFMGDIVGRLFR D908457 447 28 -
MTIALIAVYSPMALMGGITGTLFK H64100 442 28 -

Motif 7 width=24
Element Seqn Id St Int Rpt
FSITIVSAMALSVLVALILTPALC ACRF_ECOLI 470 1 -
FAVTLSVAIGISLLVSLTLTPMMC D908458 463 1 -
FAVTLSVAIGISLLVSLTLTPMMC D908461 463 1 -
FAITLAVAILISAVVSLTLTPMMC D908457 472 1 -
FALTLAGAVFISGVVALTLSPMMS H64100 467 1 -
FSITIVAAMVLSVLVAMILTPALC D908756 470 1 -
FSITIVSAMALSVLVALILTPALC ACRB_ECOLI 470 1 -
FSITIVSAMALSVIVALILTPALC MEXB_PSEAE 470 1 -
FSITLISSMLLSVFVAMSLTPALC YHIV_ECOLI 470 1 -
FSITIVAAMVLSVLVAMILTPALC ACRD_ECOLI 470 1 -

Motif 8 width=18
Element Seqn Id St Int Rpt
VLFLRLPSSFLPEEDQGV ACRF_ECOLI 553 59 -
YLFVRLPSSFLPDEDQGV ACRB_ECOLI 554 60 -
WMFTRIPTAFLPDEDQGV MEXB_PSEAE 554 60 -
VLFLRTPTSFLPEEDQGV YHIV_ECOLI 552 58 -
FLFLRLPTSFLPLEDRGM ACRD_ECOLI 553 59 -
FLFNSLSSELTPNEDKGA H64100 545 54 -
LLWVFIPKGFFPVQDNGI D908457 552 56 -
WLYISIPKTFFPEQDTGV D908461 542 55 -
WLYISIPKTFFPEQDTGV D908458 542 55 -
FLFLRLPTSFLPLEDRGM D908756 553 59 -

Motif 9 width=15
Element Seqn Id St Int Rpt
NAGMAFVSLKPWEER ACRF_ECOLI 622 51 -
NSARLQINLKPLDER D908457 619 49 -
NSGMMFITLKPRDER D908461 605 45 -
NSGMMFITLKPRDER D908458 605 45 -
NVARMFIRLKDWSER D908756 622 51 -
NVARMFIRLKDWSER ACRD_ECOLI 622 51 -
NNGLAFISLKPWSER YHIV_ECOLI 621 51 -
SSGMAFIMLKPWEER MEXB_PSEAE 623 51 -
NTGIAFVSLKDWADR ACRB_ECOLI 623 51 -
NSSLNIITLKDWKER H64100 608 45 -
Final Motifs
Motif 1  width=25
Element Seqn Id St Int Rpt
RPIFAWVLAIILMMAGALAILQLPV ACRF_ECOLI 8 8 -
RPIFAWVIAIIIMLAGGLAILKLPV ACRB_ECOLI 8 8 -
RPIFAWVIALVIMLAGGLSILSLPV MEXB_PSEAE 8 8 -
RPVFAWVLAIIMMLAGGLAIMNLPV YHIV_ECOLI 8 8 -
RPIFAWVLAILLCLTGTLAIFSLPV ACRD_ECOLI 8 8 -
RPIFAWVIALVIMLVGALSILKLPI O52248 8 8 -
RPIFAWVLAIVAMLAGALSLAKMPI O31100 8 8 -
RPVFAWVISLFIMLGGIFAIRALPV O87936 8 8 -
RPIFAWVISIFIIAAGIFGIKSLPV Q51073 8 8 -
RPNFAWVVALFISLGGLLVISKLPV Q51396 8 8 -
RPVFSSVCAIIILLVGTISIFSLPI P73998 9 9 -
RPIFAAVLSLLILIGGAISLFQLPI P95422 10 10 -
RPIFAGVLSVIILLGGVIAMFLLPI O06471 10 10 -
RPVATILLSVAITLCGILGFRMLPV YEGO_ECOLI 10 10 -
RPVATTLLMVAILLAGIIGYRALPV YEGN_ECOLI 19 19 -
NPVLTTVCTIVIILLGAIALPLLPL Q55584 12 12 -
RPVLAVSISLLMIILGLQAISKLAV Y895_HAEIN 16 16 -
RPITTLMFALAIVFFGTMGFKKLSV O68962 8 8 -
RPITTLMFALAIVFFGTMGFKKLSV O25328 8 8 -
RPVTAFMLMLSFVFLGLYSLKLVPI O66977 8 8 -

Motif 2 width=19
Element Seqn Id St Int Rpt
PTIAPPAVSVSANYPGADA ACRF_ECOLI 36 3 -
PTIAPPAVTISASYPGADA ACRB_ECOLI 36 3 -
PAIAPPAIAVQVSYPGASA MEXB_PSEAE 36 3 -
PQIAPPTITVSATYPGADA YHIV_ECOLI 36 3 -
PDLAPPNVRVTANYPGASA ACRD_ECOLI 36 3 -
PSIAPPAIAIAVTYPGASA O52248 36 3 -
PNIAAPAVSIQVSYPGASA O31100 36 3 -
PDIAPPVVSLYATYPGASA O87936 36 3 -
PSVAAPTITLHAIYPGASA Q51073 36 3 -
PNVAPPQITITATYPGASA Q51396 36 3 -
PEVAPTTIQVSSNYSGANA P73998 37 3 -
PEVVPPTVVVRANFPGANP P95422 38 3 -
PEVVPPSVIVKAQYPGANP O06471 38 3 -
PQVDFPVIIVSASLPGASP YEGO_ECOLI 38 3 -
PEVDYPTIQVVTLYPGASP YEGN_ECOLI 47 3 -
PDMAPKQVQVTTNYVGSDA Q55584 40 3 -
PKMTTTVITVSTAYPGADA Y895_HAEIN 44 3 -
PKIDLPTVVVTTTYPGASA O68962 36 3 -
PKIDLPTVVVTTTYPGASA O25328 36 3 -
PDVEFPVVRISADYPGADP O66977 36 3 -

Motif 3 width=24
Element Seqn Id St Int Rpt
SIHEVVKTLFEAIMLVFLVMYLFL ACRF_ECOLI 336 281 -
SIHEVVKTLVEAIILVFLVMYLFL ACRB_ECOLI 336 281 -
SIHEVVKTLGEAILLVFLVMYLFL MEXB_PSEAE 336 281 -
SIQEVFKTLVEAIILVFLVMYLFL YHIV_ECOLI 336 281 -
SIEDVVKTLLEAIALVFLVMYLFL ACRD_ECOLI 336 281 -
SISGVIHTLIEAVVLVFLVMYLFL O52248 336 281 -
SIESVVHTIFEAVVLVFLVMYLFL O31100 336 281 -
SMSKVVTTLVEAGVLVFAVMFLFM O87936 335 280 -
SIEKVIHTLIEAMVLVFVVMYLFL Q51073 334 279 -
AIEKVIHTLIEAMVLVFLVMFLFL Q51396 338 283 -
SLSEVVETLLIAVVLVILVILVFL P73998 338 282 -
SIEAVVHTLFEALVLVVLVVILFL P95422 339 282 -
SIKAVVHTLLEAIALVVIVVIVFL O06471 339 282 -
SLEEVEQTLIISVALVILVVFLFL YEGO_ECOLI 330 273 -
SVDDTQFELMMAIALVVMIIYLFL YEGN_ECOLI 339 273 -
SLEEAALTLIEAILLVILVIFIFL Q55584 346 287 -
SIHEVIKTIGEATLIVLVVILMFI Y895_HAEIN 334 271 -
SIEDVKFDLILGAILAVLVVFAFL O68962 321 266 -
SIEDVKFDLVLGAILAVLVVFAFL O25328 321 266 -
SIRAAFEEIIIGVFLTAFTVYLFL O66977 323 268 -

Motif 4 width=22
Element Seqn Id St Int Rpt
RATLIPTIAVPVVLLGTFAILA ACRF_ECOLI 363 3 -
RATLIPTIAVPVVLLGTFAVLA ACRB_ECOLI 363 3 -
RATLIPTIAVPVVLLGTFGVLA MEXB_PSEAE 363 3 -
RATIIPTIAVPVVILGTFAILS YHIV_ECOLI 363 3 -
RATLIPTIAEPVVLMGTFSVLY ACRD_ECOLI 363 3 -
RATIITTMTVPVVLLGTFGILA O52248 363 3 -
RATLIPTLAVPVVLLATFALLP O31100 363 3 -
RATLIPTLVVPVALLGTFGAML O87936 362 3 -
RYTLIPTIVVPISLLGGFAFIS Q51073 361 3 -
RYTLIPSIVVPVCLLGTLMVMY Q51396 365 3 -
RSALIPALTIPLALIGTFAFVK P73998 365 3 -
RASIIPLAAVPVSLIGTFAVMH P95422 366 3 -
RASLIPLIAVPVSIIGTFSLLL O06471 366 3 -
RATIIPAVSVPVSLIGTFAAMY YEGO_ECOLI 357 3 -
PATIIPGVAVPLSLIGTFAVMV YEGN_ECOLI 366 3 -
RTTLIPALAIPVSLIGAMAFAL Q55584 373 3 -
RAILIPILAIPISLIGVLMLLQ Y895_HAEIN 361 3 -
TITLVSAISIPISIMGTFALIQ O68962 348 3 -
TITLVSAISIPISIMGTFALIQ O25328 348 3 -
RLTLVPVFAIPVTILGTIFFLY O66977 350 3 -

Motif 5 width=25
Element Seqn Id St Int Rpt
NTLTMFGMVLAIGLLVDDAIVVVEN ACRF_ECOLI 391 6 -
NTLTMFGMVLAIGLLVDDAIVVVEN ACRB_ECOLI 391 6 -
NTLTMFGMVLAIGLLVDDAIVVVEN MEXB_PSEAE 391 6 -
NTLTMFGMVLAIGLLVDDAIVVVEN YHIV_ECOLI 391 6 -
NTLTMFAMVLAIGLLVDDAIVVVEN ACRD_ECOLI 391 6 -
NTLTMFAMVLAIGLLVDDAIVVVEN O52248 391 6 -
NVLTMYAMVLAIGLLVDDAIVVVEN O31100 391 6 -
NVLTMFGMVLAIGILVDDAIVVVEN O87936 390 6 -
NVLTMFAMILVIGIVVDDAIVVVEN Q51073 389 6 -
NMMTMFGMVLAIGILVDDAIVVVEN Q51396 393 6 -
NSLTLFGLTLATGLVVDDAIIVVEQ P73998 393 6 -
NALSLFGLVLAIGIVVDDAIVVVEN P95422 394 6 -
NALSLFGMVLAIGIVVDDAIVVVEN O06471 394 6 -
NNLSLMALTIATGFVVDDAIVVLEN YEGO_ECOLI 385 6 -
NNLTLMALTIATGFVVDDAIVVIEN YEGN_ECOLI 394 6 -
NQLTLFGVILATGLVVDDGILVVEA Q55584 401 6 -
NLMTLLALILAIGLVVDDAIVVLEN Y895_HAEIN 389 6 -
NMLTMVALTLAIGIIIDDAIVVIEN O68962 376 6 -
NMLTMVALTLAIGIIIDDAIVVIEN O25328 376 6 -
NTITLLALAVAVGIVIDDAIVVMES O66977 378 6 -

Motif 6 width=24
Element Seqn Id St Int Rpt
IAMVLSAVFIPMAFFGGSTGAIYR ACRF_ECOLI 445 29 -
IAMVLSAVFVPMAFFGGSTGAIYR ACRB_ECOLI 445 29 -
IAMVLSAVFLPMAFFGGSTGVIYR MEXB_PSEAE 445 29 -
IAVVLSAVFMPMAFMSGATGEIYR YHIV_ECOLI 445 29 -
IAMVLSAVFVPMAFFGPTTGAIYR ACRD_ECOLI 445 29 -
IALVLSAVLLPMAFFGGSTGVIYR O52248 445 29 -
IGMVLSAVFVPMAFFGGSAGIIYQ O31100 445 29 -
ITVVLTSVFVPMAFFGGAVGNIYR O87936 444 29 -
ITAVLISVFVPLAMFSGAAGNIYK Q51073 443 29 -
ITLVLSAVFLPLAFMAGSVGVIYQ Q51396 447 29 -
TSLVLMAVFIPVAFFPGTTGALYQ P73998 447 29 -
TALVLCAVFIPTAFISGLTGQFYR P95422 447 28 -
IALTLVAVFVPLAFMSGLTGQFYK O06471 447 28 -
MSLSLVAVFLPLLLMGGLPGRLLR YEGO_ECOLI 438 28 -
LTFSLIAVLIPLLFMGDIVGRLFR YEGN_ECOLI 447 28 -
TSLVLMAVFIPVTFFPGTTGIVYK Q55584 454 28 -
MTIALIAVYSPMALMGGITGTLFK Y895_HAEIN 442 28 -
ISAMLLSVFVPIGNMKGIIGRFFQ O68962 429 28 -
ISAMLLSVFVPIGNMKGIIGRFFQ O25328 429 28 -
STSVLIVVFLPVVFLKGVLGTFLK O66977 431 28 -

Motif 7 width=24
Element Seqn Id St Int Rpt
FSITIVSAMALSVLVALILTPALC ACRF_ECOLI 470 1 -
FSITIVSAMALSVLVALILTPALC ACRB_ECOLI 470 1 -
FSITIVSAMALSVIVALILTPALC MEXB_PSEAE 470 1 -
FSITLISSMLLSVFVAMSLTPALC YHIV_ECOLI 470 1 -
FSITIVAAMVLSVLVAMILTPALC ACRD_ECOLI 470 1 -
FSITIVSAMGLSVLVALIFTPALC O52248 470 1 -
FAITIVVCMGLSILVALVFTPALC O31100 470 1 -
FAFALAVSIGFSAFLALSLTPALC O87936 469 1 -
FALTMASSIAFSAFLALTLTPALC Q51073 468 1 -
FSVSLAVSILFSGFLALTFTPALC Q51396 472 1 -
FALTIAFSILLSTFLALTLTPSLC P73998 472 1 -
FALTIAISTVISAFNSLTLSPALA P95422 472 1 -
FAMTIAISTVISAFNSLTLSPALS O06471 472 1 -
FAVTLSVAIGISLLVSLTLTPMMC YEGO_ECOLI 463 1 -
FAITLAVAILISAVVSLTLTPMMC YEGN_ECOLI 472 1 -
FAVIMASAVAVSTFNAISFSPSMS Q55584 479 1 -
FALTLAGAVFISGVVALTLSPMMS Y895_HAEIN 467 1 -
FGITVALAIALSYVVVVTIIPMVS O68962 454 1 -
FGITVALAIALSYVVVVTIIPMVS O25328 454 1 -
FALTLIIAIGLSYLVAITFTPSAT O66977 456 1 -

Motif 8 width=18
Element Seqn Id St Int Rpt
VLFLRLPSSFLPEEDQGV ACRF_ECOLI 553 59 -
YLFVRLPSSFLPDEDQGV ACRB_ECOLI 554 60 -
WMFTRIPTAFLPDEDQGV MEXB_PSEAE 554 60 -
VLFLRTPTSFLPEEDQGV YHIV_ECOLI 552 58 -
FLFLRLPTSFLPLEDRGM ACRD_ECOLI 553 59 -
WLFARIPTAFLPEEDQGV O52248 554 60 -
YLFTQIPKAFLPNEDQGL O31100 553 59 -
LLITKLPAAFLPDEDQGN O87936 551 58 -
FLFMRLPTSFLPTEDQGF Q51073 551 59 -
YFYLRLPEAFVPAEDLGY Q51396 554 58 -
WLYVTVPTAFLPEEDQGY P73998 554 58 -
FGFSSTPTGFVPQQDKQY P95422 563 67 -
LVSKVVPGGFVPAQDKEY O06471 562 66 -
WLYISIPKTFFPEQDTGV YEGO_ECOLI 542 55 -
LLWVFIPKGFFPVQDNGI YEGN_ECOLI 552 56 -
IVYNITPTGFIPEEDQGY Q55584 561 58 -
FLFNSLSSELTPNEDKGA Y895_HAEIN 545 54 -
FVASKLGMEFMLKEDRGR O68962 530 52 -
FVASKIGMEFMLKEDRGR O25328 530 52 -
YLFPKVKKEFVPHVDEGR O66977 530 50 -

Motif 9 width=15
Element Seqn Id St Int Rpt
NAGMAFVSLKPWEER ACRF_ECOLI 622 51 -
NTGIAFVSLKDWADR ACRB_ECOLI 623 51 -
SSGMAFIMLKPWEER MEXB_PSEAE 623 51 -
NNGLAFISLKPWSER YHIV_ECOLI 621 51 -
NVARMFIRLKDWSER ACRD_ECOLI 622 51 -
SSGMAFIMLKPWDER O52248 623 51 -
NSGLVLITFKDWKER O31100 622 51 -
NGGMIFVTMKDWKER O87936 618 49 -
NMAMGFAIFKDWNER Q51073 618 49 -
NAALAFPTFKDWSER Q51396 621 49 -
NQGIIFTRLKPWGER P73998 621 49 -
NSGIVFTPLKPFDER P95422 632 51 -
SAGIVFVTLKPFAER O06471 631 51 -
NSGMMFITLKPRDER YEGO_ECOLI 605 45 -
NSARLQINLKPLDER YEGN_ECOLI 619 49 -
SKSLFFVKLKNWDER Q55584 628 49 -
NSSLNIITLKDWKER Y895_HAEIN 608 45 -
FKAKIFVQLKPLKER O68962 596 48 -
FKAKIFVQLKPLKER O25328 596 48 -
HSGLFFVYLKERSQR O66977 597 49 -