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PR00050

Identifier
COLDSHOCK  [View Relations]  [View Alignment]  
Accession
PR00050
No. of Motifs
3
Creation Date
14-SEP-1993  (UPDATE 27-JUN-1999)
Title
Cold shock protein signature
Database References

PROSITE; PS00352 COLD_SHOCK
PFAM; PF00313 CSD
INTERPRO; IPR002059
Literature References
1. OBOKATA, J., OHME, M. AND HAYASHIDA, N.
Nucleotide sequence of a cDNA clone encoding a putative glycine-rich 
protein of 19.7kDa in Nicotiana sylvestris.
PLANT MOL.BIOL. 17(4) 953-955 (1991).
 
2. TAFURI, S.R. AND WOLFFE, A.P.
Xenopus Y-box transcription factors - Molecular cloning, functional 
analysis, and developmental regulation.
PROC.NATL.ACAD.SCI.U.S.A. 87(22) 9028-9032 (1990).

Documentation
When E.coli is exposed to a temperature drop from 37 to 10 degrees
centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at
a reduced rate [1]. During the lag phase, the expression of around 13
proteins, which contain specific DNA-binding regions [2], is increased
2-10 fold. These so-called `cold shock' proteins are thought to help the
cell to survive in temperatures lower than optimum growth temperature, by
contrast with heat shock proteins, which help the cell to survive in
temperatures greater than the optimum, possibly by condensation of the
chromosome and organization of the prokaryotic nucleoid [1].
 
COLDSHOCK is a 3-element fingerprint that provides a signature for the
cold shock proteins. The fingerprint was derived from an initial alignment
of 5 sequences: motifs 1 and 2 span the region encoded by PROSITE pattern
COLD_SHOCK (PS00352), the putative DNA-binding domain. Two iterations on
OWL21.1 were required to reach convergence, at which point a true set
comprising 21 sequences was identified. A single partial match was also
found, a fragment matching motifs 1 and 2.
 
An update on SPTR37_9f identified a true set of 89 sequences, and 1
partial match.
Summary Information
  89 codes involving  3 elements
1 codes involving 2 elements
Composite Feature Index
3898989
2110
123
True Positives
CAPB_PSEFR    CBFX_HUMAN    CBFX_MOUSE    CSP1_LACPL    
CSP2_LACPL CSP7_STRCL CSPA_BACCE CSPA_ECOLI
CSPA_LISMO CSPA_PSEAE CSPA_SALTY CSPA_STIAU
CSPB_BACCE CSPB_BACCL CSPB_BACST CSPB_BACSU
CSPB_ECOLI CSPB_LISMO CSPC_BACCE CSPC_BACSU
CSPC_ECOLI CSPD_BACCE CSPD_BACSU CSPD_ECOLI
CSPD_HAEIN CSPE_ECOLI CSPF_ECOLI CSPF_STRCO
CSPG_ECOLI CSPH_ECOLI CSPH_SALTY CSPI_ECOLI
CSP_ARTGO DBPA_HUMAN GRP2_NICSY O01315
O01316 O13014 O13015 O30875
O32772 O33052 O33591 O33592
O34279 O46173 O48829 O53883
O54117 O54310 O61580 O62213
O65639 O67327 O68636 O69550
O85593 O93584 P91306 P91398
P91599 P91602 P92186 Q14121
Q14972 Q15325 Q23960 Q27277
Q28618 Q38896 Q41188 Q60950
Q60951 Q61478 Q62764 Q63748
Q90376 Q90650 Q91956 Y174_MYCTU
Y4CH_RHISN YB1_CHICK YB1_HUMAN YB1_XENLA
YB3_XENLA YB54_XENLA YB56_XENLA YBFH_APLCA
True Positive Partials
Codes involving 2 elements
Q63430
Sequence Titles
CAPB_PSEFR  COLD SHOCK PROTEIN CAPB (COLD ACCLIMATION PROTEIN B) (C8.0) - PSEUDOMONAS FRAGI. 
CBFX_HUMAN Y BOX BINDING PROTEIN-1 (Y-BOX TRANSCRIPTION FACTOR) (YB-1) (CCAAT- BINDING TRANSCRIPTION FACTOR I SUBUNIT A) (CBF-A) (ENHANCER FACTOR I SUBUNIT A) (EFI-A) (DNA-BINDING PROTEIN B) (DBPB) - HOMO SAPIENS (HUMAN), AND BOS TAURUS (BOVINE).
CBFX_MOUSE Y BOX BINDING PROTEIN-1 (Y-BOX TRANSCRIPTION FACTOR) (YB-1) (CCAAT- BINDING TRANSCRIPTION FACTOR I SUBUNIT A) (CBF-A) (ENHANCER FACTOR I SUBUNIT A) (EFI-A) (DNA-BINDING PROTEIN B) (DBPB) - MUS MUSCULUS (MOUSE), AND RATTUS NORVEGICUS (RAT).
CSP1_LACPL COLD SHOCK PROTEIN 1 - LACTOBACILLUS PLANTARUM.
CSP2_LACPL COLD SHOCK PROTEIN 2 - LACTOBACILLUS PLANTARUM.
CSP7_STRCL COLD SHOCK-LIKE PROTEIN 7.0 - STREPTOMYCES CLAVULIGERUS.
CSPA_BACCE MAJOR COLD SHOCK PROTEIN CSPA - BACILLUS CEREUS.
CSPA_ECOLI COLD SHOCK PROTEIN CSPA (CSP-A) (7.4 KD COLD SHOCK PROTEIN) (CS7.4) - ESCHERICHIA COLI.
CSPA_LISMO COLD SHOCK-LIKE PROTEIN CSPLA (CSPL) - LISTERIA MONOCYTOGENES.
CSPA_PSEAE MAJOR COLD SHOCK PROTEIN CSPA - PSEUDOMONAS AERUGINOSA.
CSPA_SALTY COLD SHOCK PROTEIN CSPA - SALMONELLA TYPHIMURIUM.
CSPA_STIAU COLD SHOCK-LIKE PROTEIN CSPA - STIGMATELLA AURANTIACA.
CSPB_BACCE COLD SHOCK-LIKE PROTEIN CSPB - BACILLUS CEREUS.
CSPB_BACCL COLD SHOCK PROTEIN CSPB - BACILLUS CALDOLYTICUS.
CSPB_BACST COLD SHOCK PROTEIN CSPB (MAJOR COLD SHOCK PROTEIN) - BACILLUS STEAROTHERMOPHILUS.
CSPB_BACSU COLD SHOCK PROTEIN CSPB (MAJOR COLD SHOCK PROTEIN) - BACILLUS SUBTILIS.
CSPB_ECOLI COLD SHOCK-LIKE PROTEIN CSPB (CSP-B) - ESCHERICHIA COLI.
CSPB_LISMO COLD SHOCK-LIKE PROTEIN CSPLB - LISTERIA MONOCYTOGENES.
CSPC_BACCE COLD SHOCK-LIKE PROTEIN CSPC - BACILLUS CEREUS.
CSPC_BACSU COLD SHOCK PROTEIN CSPC - BACILLUS SUBTILIS.
CSPC_ECOLI COLD SHOCK-LIKE PROTEIN CSPC (CSP-C) - ESCHERICHIA COLI.
CSPD_BACCE COLD SHOCK-LIKE PROTEIN CSPD - BACILLUS CEREUS.
CSPD_BACSU COLD SHOCK PROTEIN CSPD - BACILLUS SUBTILIS.
CSPD_ECOLI COLD SHOCK-LIKE PROTEIN CSPD (CSP-D) - ESCHERICHIA COLI.
CSPD_HAEIN COLD SHOCK-LIKE PROTEIN CSPD - HAEMOPHILUS INFLUENZAE.
CSPE_ECOLI COLD SHOCK-LIKE PROTEIN CSPE (CSP-E) - ESCHERICHIA COLI.
CSPF_ECOLI COLD SHOCK-LIKE PROTEIN CSPF (CSP-F) - ESCHERICHIA COLI.
CSPF_STRCO COLD SHOCK PROTEIN SCOF - STREPTOMYCES COELICOLOR.
CSPG_ECOLI COLD SHOCK-LIKE PROTEIN CSPG (CPS-G) - ESCHERICHIA COLI.
CSPH_ECOLI COLD SHOCK-LIKE PROTEIN CSPH (CSP-H) - ESCHERICHIA COLI.
CSPH_SALTY COLD SHOCK-LIKE PROTEIN CSPH - SALMONELLA TYPHIMURIUM.
CSPI_ECOLI COLD SHOCK-LIKE PROTEIN CSPI (CPS-I) - ESCHERICHIA COLI.
CSP_ARTGO COLD SHOCK PROTEIN - ARTHROBACTER GLOBIFORMIS.
DBPA_HUMAN DNA-BINDING PROTEIN A (COLD SHOCK DOMAIN PROTEIN A) (SINGLE-STRAND DNA BINDING PROTEIN NF-GMB) - HOMO SAPIENS (HUMAN).
GRP2_NICSY GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 2 PRECURSOR - NICOTIANA SYLVESTRIS (WOOD TOBACCO).
O01315 F02E9.2A PROTEIN - CAENORHABDITIS ELEGANS.
O01316 F02E9.2B PROTEIN - CAENORHABDITIS ELEGANS.
O13014 Y BOX PROTEIN 1 - CARASSIUS AURATUS (GOLDFISH).
O13015 Y BOX PROTEIN 2 - CARASSIUS AURATUS (GOLDFISH).
O30875 MAJOR COLD-SHOCK PROTEIN - MICROCOCCUS LUTEUS (MICROCOCCUS LYSODEIKTICUS).
O32772 COLD SHOCK PROTEIN - LACTOCOCCUS LACTIS.
O33052 SMALL COLD-SHOCK PROTEIN - MYCOBACTERIUM LEPRAE.
O33591 CSPB - STAPHYLOCOCCUS AUREUS.
O33592 CSPC - STAPHYLOCOCCUS AUREUS.
O34279 HYPOTHETICAL 7.5 KD PROTEIN - YERSINIA PESTIS.
O46173 Y-BOX PROTEIN - DROSOPHILA MELANOGASTER (FRUIT FLY).
O48829 PUTATIVE GLYCINE-RICH, ZINC-FINGER DNA-BINDING PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O53883 COLD SHOCK PROTEIN B - MYCOBACTERIUM TUBERCULOSIS.
O54117 COLD-SHOCK DOMAIN PROTEIN - STREPTOMYCES COELICOLOR.
O54310 COLD SHOCK PROTEIN - THERMOTOGA MARITIMA.
O61580 Y BOX PROTEIN - DROSOPHILA SILVESTRIS (FRUIT FLY).
O62213 F33A8.3 PROTEIN - CAENORHABDITIS ELEGANS.
O65639 GLYCINE-RICH PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O67327 COLD SHOCK PROTEIN - AQUIFEX AEOLICUS.
O68636 COLD SHOCK PROTEIN C - SALMONELLA TYPHIMURIUM.
O69550 SMALL COLD-SHOCK PROTEIN - MYCOBACTERIUM LEPRAE.
O85593 COLD SHOCK PROTEIN CSPB - YERSINIA ENTEROCOLITICA.
O93584 ZFY1 - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBRA DANIO).
P91306 SIMILARITY TO A COLD-SHOCK DOMAIN - CAENORHABDITIS ELEGANS.
P91398 SIMILARITY TO COLD-SHOCK DOMAINS - CAENORHABDITIS ELEGANS.
P91599 LIN-28 - CAENORHABDITIS REMANEI.
P91602 LIN-28 - CAENORHABDITIS VULGARIS.
P92186 LIN-28 - CAENORHABDITIS ELEGANS.
Q14121 DNA-BINDING PROTEIN A (COLD SHOCK DOMAIN PROTEIN A) (SINGLE-STRAND DNA BINDING PROTEIN NF-GMB) - HOMO SAPIENS (HUMAN).
Q14972 DNA-BINDING PROTEIN - HOMO SAPIENS (HUMAN).
Q15325 NUCLEASE SENSITIVE ELEMENT BINDING PROTEIN-1 - HOMO SAPIENS (HUMAN).
Q23960 Y-BOX PROTEIN - DUGESIA JAPONICA (PLANARIAN).
Q27277 Y-BOX BINDING PROTEIN HOMOLOG - SCHISTOSOMA MANSONI (BLOOD FLUKE).
Q28618 MRNP PARTICLE MAJOR PROTEIN P50 - ORYCTOLAGUS CUNICULUS (RABBIT).
Q38896 GLYCINE-RICH PROTEIN ATGRP2B - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
Q41188 GLYCINE-RICH PROTEIN - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
Q60950 MYB-1A - MUS MUSCULUS (MOUSE).
Q60951 MYB-1B - MUS MUSCULUS (MOUSE).
Q61478 DBPA MURINE HOMOLOGUE - MUS MUSCULUS (MOUSE).
Q62764 DNA-BINDING PROTEIN A (COLD SHOCK DOMAIN PROTEIN A) (MUSCLE Y-BOX PROTEIN YB2) (Y-BOX BINDING PROTEIN-A) (RYB-A) - RATTUS NORVEGICUS (RAT).
Q63748 DNA-BINDING PROTEIN A (COLD SHOCK DOMAIN PROTEIN A) (MUSCLE Y-BOX PROTEIN YB2) (Y-BOX BINDING PROTEIN-A) (RYB-A) - RATTUS NORVEGICUS (RAT).
Q90376 Y-BOX BINDING PROTEIN - COLUMBA LIVIA (DOMESTIC PIGEON).
Q90650 ROUS SARCOMA VIRUS TRANSCRIPTION ENHANCER FACTOR II - GALLUS GALLUS (CHICKEN).
Q91956 DBPB/YB-1 PROTEIN HOMOLOGUE, COMPLETE CDS, CLONE CLFEST34 - GALLUS GALLUS (CHICKEN).
Y174_MYCTU PROBABLE COLD SHOCK PROTEIN A - MYCOBACTERIUM TUBERCULOSIS.
Y4CH_RHISN PROBABLE COLD SHOCK PROTEIN Y4CH - RHIZOBIUM SP. (STRAIN NGR234).
YB1_CHICK Y BOX BINDING PROTEIN-1 (Y-BOX TRANSCRIPTION FACTOR) - GALLUS GALLUS (CHICKEN).
YB1_HUMAN Y BOX BINDING PROTEIN-1 (Y-BOX TRANSCRIPTION FACTOR) (YB-1) (CCAAT- BINDING TRANSCRIPTION FACTOR I SUBUNIT A) (CBF-A) (ENHANCER FACTOR I SUBUNIT A) (EFI-A) (DNA-BINDING PROTEIN B) (DBPB) - HOMO SAPIENS (HUMAN), AND BOS TAURUS (BOVINE).
YB1_XENLA Y BOX BINDING PROTEIN-1 (Y-BOX TRANSCRIPTION FACTOR) - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
YB3_XENLA B BOX BINDING PROTEIN (YB3 PROTEIN) - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
YB54_XENLA CYTOPLASMIC RNA-BINDING PROTEIN P54 (Y-BOX FACTOR HOMOLOG) (MRNP3) - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
YB56_XENLA CYTOPLASMIC RNA-BINDING PROTEIN P56 (Y BOX BINDING PROTEIN-2) (Y-BOX TRANSCRIPTION FACTOR) (MRNP4) - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
YBFH_APLCA Y-BOX FACTOR HOMOLOG (APY1) - APLYSIA CALIFORNICA (CALIFORNIA SEA HARE).

Q63430 PIPPIN PROTEIN - RATTUS NORVEGICUS (RAT).
Scan History
OWL21_1    2  100  NSINGLE    
OWL25_2 1 100 NSINGLE
SPTR37_9f 3 110 NSINGLE
Initial Motifs
Motif 1  width=16
Element Seqn Id St Int Rpt
GTVKWFNVRNGYGFIN CBFX_MOUSE 59 59 -
GTVKWFNVRNGYGFIN DBPA_HUMAN 93 93 -
GTVKWFNVRNGYGFIN YB1_XENLA 39 39 -
GTVKWFSDQKGFGFIT GRP2_NICSY 11 11 -
GTVKWFNAEKGFGFIA CSP7_STRCL 4 4 -

Motif 2 width=10
Element Seqn Id St Int Rpt
EDVFVHQTAI CBFX_MOUSE 80 5 -
EDVFVHQTAI DBPA_HUMAN 114 5 -
EDVFVHQTAI YB1_XENLA 60 5 -
EDLFVHQSGI GRP2_NICSY 32 5 -
PDVFVHYSAI CSP7_STRCL 25 5 -

Motif 3 width=19
Element Seqn Id St Int Rpt
RSVGDGETVEFDVVEGEKG CBFX_MOUSE 99 9 -
RSVGDGETVEFDVVEGEKG DBPA_HUMAN 133 9 -
RSVGDGETVEFDVVEGEKG YB1_XENLA 79 9 -
RSLAEGETVEFEVESGGDG GRP2_NICSY 47 5 -
RSLEENQVVNFDVTHGEGP CSP7_STRCL 40 5 -
Final Motifs
Motif 1  width=16
Element Seqn Id St Int Rpt
GTVKWFNVRNGYGFIN CBFX_HUMAN 61 61 -
GTVKWFNVRNGYGFIN CBFX_MOUSE 59 59 -
GTVKWFNVRNGYGFIN DBPA_HUMAN 93 93 -
GTVKWFNVRNGYGFIN O13014 42 42 -
GTVKWFNVRNGYGFIN O93584 41 41 -
GTVKWFNVRNGYGFIN Q14121 93 93 -
GTVKWFNVRNGYGFIN Q14972 58 58 -
GTVKWFNVRNGYGFIN Q15325 60 60 -
GTVKWFNVRNGYGFIN Q28618 61 61 -
GTVKWFNVRNGYGFIN Q60950 59 59 -
GTVKWFNVRNGYGFIN Q60951 59 59 -
GTVKWFNVRNGYGFIN Q61478 85 85 -
GTVKWFNVRNGYGFIN Q62764 85 85 -
GTVKWFNVRNGYGFIN Q63748 84 84 -
GTVKWFNVRNGYGFIN Q90376 24 24 -
GTVKWFNVRNGYGFIN Q91956 59 59 -
GTVKWFNVRNGYGFIN YB1_CHICK 58 58 -
GTVKWFNVRNGYGFIN YB1_HUMAN 61 61 -
GTVKWFNVRNGYGFIN CBFX_MOUSE 59 59 -
GTVKWFNVRNGYGFIN YB1_XENLA 39 39 -
GTVKWFNVRNGYGFIN YB3_XENLA 39 39 -
GTVKWFNVRNGYGFIN YB54_XENLA 44 44 -
GTVKWFNVRNGYGFIN YB56_XENLA 44 44 -
GTVKWFNVKSGYGFIN YBFH_APLCA 35 35 -
GTVKWFNVRNGYGFIN Q90650 90 90 -
GTVKWFNVKSGYGFIN O46173 65 65 -
GTVKWFNVKSGYGFIN O61580 50 50 -
GTVKWFNVRNGYGFIN O13015 23 23 -
GTVKWFNAEKGFGFIE O33592 4 4 -
GTVKWFNAEKGFGFIE CSPA_LISMO 4 4 -
GTVKWFNAEKGFGFIE CSPC_BACSU 4 4 -
GRVKWFNAEKGFGFIE CSPC_BACCE 3 3 -
GTVKWFNVKNGYGFIN O62213 23 23 -
GKVKWFNNEKGFGFIE CSPB_BACCE 3 3 -
GKVKWFNGEKGFGFIE CSPD_BACCE 4 4 -
GKVKWFNNEKGFGFIE CSPD_BACSU 4 4 -
GIVKWFNADKGFGFIT CSPA_SALTY 6 6 -
GIVKWFNADKGFGFIT CSPA_ECOLI 6 6 -
GKVKWFNSEKGFGFIE CSPB_BACSU 4 4 -
GVVKWFNVKAGYGFIN Q27277 28 28 -
GNVKWFNESKGFGFIT CSPE_ECOLI 5 5 -
GQVKWFNESKGFGFIT CSPC_ECOLI 5 5 -
GTVKWFNSEKGFGFIE CSPB_LISMO 4 4 -
GKVKWFNNEKGYGFIE CSPB_BACST 4 4 -
GQVKWFNNEKGFGFIE CSPA_BACCE 5 5 -
GLVKWFNADKGFGFIS CSPB_ECOLI 7 7 -
GKVKWFNNEKGYGFIE CSPB_BACCL 4 4 -
GTVKWFNDAKGFGFIT CSPA_STIAU 4 4 -
GLVKWFDAGKGFGFIT O34279 7 7 -
GLVKWFDAGKGFGFIS O85593 7 7 -
GLVKWFNPEKGFGFIT CSPI_ECOLI 7 7 -
GTVKWFNAEKGFGFIE O33591 4 4 -
GKVKWFDSKKGYGFIT O54310 3 3 -
GQGKWFNESKGFGFIT O68636 6 6 -
GLVKWFNADKGFGFIT CSPG_ECOLI 7 7 -
GTVKWFNADKGYGFIT CSP1_LACPL 4 4 -
GTVKWFNADKGFGFIT CSP2_LACPL 4 4 -
GTVKWFNAEKGYGFIA O30875 4 4 -
GTVKWFSDQKGFGFIT GRP2_NICSY 11 11 -
GTVKWFNAEKGFGFIA CSP7_STRCL 4 4 -
GTVKWFSKDKGYGFIT O67327 5 5 -
GTVKWFNDEKGFGFIT CAPB_PSEFR 7 7 -
GTVKWFNAEKGFGFIE O54117 4 4 -
GTVKWFNDAKGFGFIT CSPA_PSEAE 7 7 -
GTVKWFNPDKGFGFIT O32772 4 4 -
GTVKWFNAEKGFGFIA O69550 4 4 -
GTVKWFNAEKGFGFIA Y174_MYCTU 4 4 -
GTVKWFNAEKGFGFIT CSP_ARTGO 4 4 -
GTVKWFNSEKGFGFIA CSPF_STRCO 4 4 -
GKVKWFNVKRGYGFVC Q23960 31 31 -
GTVKWFNNAKGFGFIC CSPD_ECOLI 4 4 -
GTVKWFDTQKGFGFIT Q38896 17 17 -
GKVKWYSVLRRYGFIS P91398 66 66 -
GKVKWYSVLRRYGFIS P91306 68 68 -
GKVNWFNASKGYGFIT O65639 13 13 -
GIVKWFNNAKGFGFIS CSPD_HAEIN 4 4 -
GSCKWFNVSKGYGFVI O01315 55 55 -
GSCKWFNVSKGYGFVI P92186 55 55 -
GSCKWFNVSKGYGFVI P91602 55 55 -
GSCKWFNVSKGYGFVI P91599 51 51 -
GSCKWFNVSKGYGFVI O01316 24 24 -
GTVKWFNATKGFGFIQ Y4CH_RHISN 5 5 -
GSVKWFDTQKGFGFIT Q41188 13 13 -
GKVSWFSDGKGYGFIT O48829 11 11 -
GKVKWYDADKGFGFLS O33052 4 4 -
GKVKWYDPDKGFGFLS O53883 4 4 -
GIVKTFDCKSGKGLIT CSPH_SALTY 7 7 -
GIVKTFDRKSGKGFII CSPH_ECOLI 7 7 -
GIVKTFDGKSGKGLIT CSPF_ECOLI 7 7 -

Motif 2 width=10
Element Seqn Id St Int Rpt
EDVFVHQTAI CBFX_HUMAN 82 5 -
EDVFVHQTAI CBFX_MOUSE 80 5 -
EDVFVHQTAI DBPA_HUMAN 114 5 -
EDVFVHQTAI O13014 63 5 -
EDVFVHQTAI O93584 62 5 -
EDVFVHQTAI Q14121 114 5 -
EDVFVHQTAI Q14972 79 5 -
EDVFVHQTAI Q15325 81 5 -
EDVFVHQTAI Q28618 82 5 -
EDVFVHQTAI Q60950 80 5 -
EDVFVHQTAI Q60951 80 5 -
EDVFVHQTAI Q61478 106 5 -
EDVFVHQTAI Q62764 106 5 -
EDVFVHQTAI Q63748 105 5 -
EDVFVHQTAI Q90376 45 5 -
EDVFVHQTAI Q91956 80 5 -
EDVFVHQTAI YB1_CHICK 79 5 -
EDVFVHQTAI YB1_HUMAN 82 5 -
EDVFVHQTAI CBFX_MOUSE 80 5 -
EDVFVHQTAI YB1_XENLA 60 5 -
EDVFVHQTAI YB3_XENLA 60 5 -
EDVFVHQTAI YB54_XENLA 65 5 -
EDVFVHQTAI YB56_XENLA 65 5 -
EDVFVHQTAI YBFH_APLCA 56 5 -
EDVFVHQTAI Q90650 111 5 -
EDVFVHQSAI O46173 86 5 -
EDVFVHQSAI O61580 71 5 -
EDVFVHQTAI O13015 44 5 -
SDVFVHFSAI O33592 24 4 -
DDVFVHFSAI CSPA_LISMO 24 4 -
DDVFVHFSAI CSPC_BACSU 24 4 -
DDVFVHFSAI CSPC_BACCE 23 4 -
EDIFVHQTAI O62213 44 5 -
EDVFVHFSAI CSPB_BACCE 23 4 -
EDVFVHFSAI CSPD_BACCE 24 4 -
DDVFVHFTAI CSPD_BACSU 24 4 -
KDVFVHFSAI CSPA_SALTY 27 5 -
KDVFVHFSAI CSPA_ECOLI 27 5 -
DDVFVHFSAI CSPB_BACSU 24 4 -
TDIFVHQSAI Q27277 49 5 -
KDVFVHFSAI CSPE_ECOLI 26 5 -
KDVFVHFSAI CSPC_ECOLI 26 5 -
DDIFVHFSAI CSPB_LISMO 24 4 -
SDVFVHFTAI CSPB_BACST 24 4 -
NDVFVHFSAI CSPA_BACCE 25 4 -
KDVFVHFSAI CSPB_ECOLI 28 5 -
SDVFVHFTAI CSPB_BACCL 24 4 -
EDVFCHHSAI CSPA_STIAU 25 5 -
KDVFVHFSAI O34279 28 5 -
KDVFVHFSAI O85593 28 5 -
KDVFVHFSAI CSPI_ECOLI 28 5 -
GDVFVHFSGI O33591 24 4 -
GDVFVHWSAI O54310 23 4 -
KDVFVHFSAI O68636 27 5 -
KDVFVHFTAI CSPG_ECOLI 28 5 -
NDVFVHFSAI CSP1_LACPL 24 4 -
TDVFVHFSAI CSP2_LACPL 24 4 -
ADVFVHFSAI O30875 25 5 -
EDLFVHQSGI GRP2_NICSY 32 5 -
PDVFVHYSAI CSP7_STRCL 25 5 -
ADVFVHFTDI O67327 26 5 -
DDLFVHFKAI CAPB_PSEFR 27 4 -
ADVFAHYSNI O54117 25 5 -
NDLFVHFRSI CSPA_PSEAE 27 4 -
QDVFAHFSQI O32772 24 4 -
ADVFVHYTEI O69550 25 5 -
ADVFVHYTEI Y174_MYCTU 25 5 -
GDVFVHYSEI CSP_ARTGO 25 5 -
PDVFAHYSNI CSPF_STRCO 25 5 -
EDIFIHQSAI Q23960 52 5 -
EDIFAHYSTI CSPD_ECOLI 25 5 -
DDLFVHQSSI Q38896 38 5 -
KDVFVHQTAI P91398 87 5 -
KDIFVHQTAI P91306 89 5 -
VELFVHQSSI O65639 34 5 -
ADIFAHYSVI CSPD_HAEIN 25 5 -
EDLFVHQSNL O01315 76 5 -
EDLFVHQSNL P92186 76 5 -
EDLFVHQSNL P91602 76 5 -
EDLFVHQSNL P91599 72 5 -
EDLFVHQSNL O01316 45 5 -
ADVFVHISAV Y4CH_RHISN 26 5 -
DDLFVHQSSI Q41188 34 5 -
EELFVHQSSI O48829 32 5 -
EDVYVRSSAL O33052 24 4 -
EDVYVRSSAL O53883 24 4 -
KDVQVHISAC CSPH_SALTY 28 5 -
KEVQVHISAF CSPH_ECOLI 28 5 -
IDVQLHVSAL CSPF_ECOLI 28 5 -

Motif 3 width=19
Element Seqn Id St Int Rpt
RSVGDGETVEFDVVEGEKG CBFX_HUMAN 101 9 -
RSVGDGETVEFDVVEGEKG CBFX_MOUSE 99 9 -
RSVGDGETVEFDVVEGEKG DBPA_HUMAN 133 9 -
RSVGDGETVEFDVVEGEKG O13014 82 9 -
RSVGDGETVEFDVVEGEKG O93584 81 9 -
RSVGDGETVEFDVVEGEKG Q14121 133 9 -
RSVGDGETVEFDVVEGEKG Q14972 98 9 -
RSVGDGETVEFDVVEGEKG Q15325 100 9 -
RSVGDGETVEFDVVEGEKG Q28618 101 9 -
RSVGDGETVEFDVVEGEKG Q60950 99 9 -
RSVGDGETVEFDVVEGEKG Q60951 99 9 -
RSVGDGETVEFDVVEGEKG Q61478 125 9 -
RSVGDGETVEFDVVEGEKG Q62764 125 9 -
RSVGDGETVEFDVVEGEKG Q63748 124 9 -
RSVGDGETVEFDVVEGEKG Q90376 64 9 -
RSVGDGETVEFDVVEGEKG Q91956 99 9 -
RSVGDGETVEFDVVEGEKG YB1_CHICK 98 9 -
RSVGDGETVEFDVVEGEKG YB1_HUMAN 101 9 -
RSVGDGETVEFDVVEGEKG CBFX_MOUSE 99 9 -
RSVGDGETVEFDVVEGEKG YB1_XENLA 79 9 -
RSVGDGETVEFDVVEGEKG YB3_XENLA 79 9 -
RSVGDGETVEFDVVEGEKG YB54_XENLA 84 9 -
RSVGDGETVEFDVVEGEKG YB56_XENLA 84 9 -
RSVGDGEKVEFDVVEGEKG YBFH_APLCA 75 9 -
ASVGDGETVEFDVVEGEKG Q90650 130 9 -
RSVGDGEVVEFDVVIGEKG O46173 104 8 -
RSVGDGELVEFDVVIGEKG O61580 90 9 -
RSVGDGEVVEFDVVEAAKG O13015 63 9 -
KSLEEGQKVEFDIVEGDRG O33592 39 5 -
KSLDEGQAVTFDVEEGQRG CSPA_LISMO 39 5 -
KSLDEGQKVSFDVEQGARG CSPC_BACSU 39 5 -
KSLEEGQQVEFDIVDGARG CSPC_BACCE 38 5 -
RSLGDNEEVMFDIVEGSKG O62213 63 9 -
KALEEGQEVSFDITEGNRG CSPB_BACCE 38 5 -
KTLEEGQEVSFEIVDGNRG CSPD_BACCE 39 5 -
KSLEEGQEVSFEIVEGNRG CSPD_BACSU 39 5 -
KSLDEGQKVSFTIESGAKG CSPA_SALTY 42 5 -
KSLDEGQKVSFTIESGAKG CSPA_ECOLI 42 5 -
KTLEEGQAVSFEIVEGNRG CSPB_BACSU 39 5 -
RSLQEGEEVEFYVVEGDKG Q27277 68 9 -
KTLAEGQRVEFEITNGAKG CSPE_ECOLI 41 5 -
KTLAEGQNVEFEIQDGQKG CSPC_ECOLI 41 5 -
KTLDEGQSVEFEIVEGQRG CSPB_LISMO 39 5 -
KSLEEGQEVSFEIVQGNRG CSPB_BACST 39 5 -
KSLEEGQKVSFEIEDGNRG CSPA_BACCE 40 5 -
RTLFEGQKVTFSIESGAKG CSPB_ECOLI 43 5 -
KTLEEGQEVSFEIVQGNRG CSPB_BACCL 39 5 -
RTLQEGQKVEFEVTRGPKG CSPA_STIAU 40 5 -
KTLDEGQNVEFSIENGAKG O34279 43 5 -
KTLDEGQNVEFSIEQGQKG O85593 43 5 -
KTLTENQEVEFGIENGPKG CSPI_ECOLI 43 5 -
KTLEEGQKVTFEITEGQRG O33591 39 5 -
KTLKEGQVVEFEIQEGKKG O54310 38 5 -
KTLAEGQNVEFEIQDGQKG O68636 42 5 -
RTLNENQKVEFSIEQGQRG CSPG_ECOLI 43 5 -
KTLEEGQKVTFDEESSDRG CSP1_LACPL 39 5 -
KTLDEGQKVTYDEEQGDRG CSP2_LACPL 39 5 -
KELQENDRVEFETQDGPKG O30875 40 5 -
RSLAEGETVEFEVESGGDG GRP2_NICSY 47 5 -
RSLEENQVVNFDVTHGEGP CSP7_STRCL 40 5 -
KTLQKGQKVEFDVVEDTKG O67327 41 5 -
KSLKEGQQVSFIATRGQKG CAPB_PSEFR 42 5 -
RELLEGQKVNFDIAQGQKG O54117 40 5 -
KSLQEGQKVSFVVVNGQKG CSPA_PSEAE 42 5 -
KTLDEGQKVTFDVEAGQRG O32772 39 5 -
RTLEENQKVEFEIGHSPKG O69550 40 5 -
RTLEENQKVEFEIGHSPKG Y174_MYCTU 40 5 -
KTLDENARVQFEIGQGAKG CSP_ARTGO 40 5 -
RELQEGQAVTFDITQGQKG CSPF_STRCO 40 5 -
KSVGEGEEILFDIVKGAKG Q23960 71 9 -
RTLKAGQSVQFDVHQGPKG CSPD_ECOLI 40 5 -
RSLAAEESVEFDVEVDNSG Q38896 53 5 -
RTLADEEEVLFDLVDGKNG P91398 107 10 -
RTLGDDEEVLFDLVEGKNG P91306 109 10 -
RSLTVGDAVEFAITQGSDG O65639 49 5 -
RSLKAGQKVQFEVLHSDKG CSPD_HAEIN 40 5 -
RSLDEGERVSYYIQERSNG O01315 91 5 -
RSLDEGERVSYYIQERSNG P92186 91 5 -
RSLDEGERVSYYIQERSNG P91602 91 5 -
RSLDEGERVSYYIQERSNG P91599 87 5 -
RSLDEGERVSYYIQERSNG O01316 60 5 -
RELKDGQKISYELVKDRKS Y4CH_RHISN 41 5 -
RSLAAEEAVEFEVEIDNNN Q41188 49 5 -
RSLTLGESVEYEIALGSDG O48829 47 5 -
EGLKAGQRVEFGVASGRRG O33052 38 4 -
EALKAGQRVEFGIASGRRG O53883 38 4 -
EALIPGIRVEFCRINGLRG CSPH_SALTY 43 5 -
EVLIPGLRVEFCRVNGLRG CSPH_ECOLI 43 5 -
EEITTGLRVEFCRINGLRG CSPF_ECOLI 43 5 -