SPRINT Home UMBER Home Contents Standard Search Advanced Search Relation Search

==SPRINT==> PRINTS View



  selected as


PR00046

Identifier
SIGMA70FCT  [View Relations]  [View Alignment]  
Accession
PR00046
No. of Motifs
5
Creation Date
24-JUN-1993  (UPDATE 22-JUN-1999)
Title
Major sigma-70 factor signature
Database References

PROSITE; PS00715 SIGMA70_1; PS00716 SIGMA70_2
PFAM; PF00140 sigma70
INTERPRO; IPR000943
Literature References
1. TANAKA, K., SHIINA, T. AND TAKAHASHI, H. 
Multiple principal sigma factor homologs in eubacteria - Identification of
the rpoD box.
SCIENCE 242 1040-1042 (1988).
 
2. APELIAN, D. AND INOUYE, S.
Development specific sigma factor essential for late stage differentiation 
of Myxococcus xanthus.
GENES DEV. 4(8) 1396-1403 (1990).
 
3. BURTON, Z.F., BURGESS, R.R., LIN, J., MOORE, D., HOLDER, S. AND 
GROSS, C.
The nucleotide sequence of the cloned rpoD gene for the RNA polymerase
sigma subunit from Eschericia coli K12.
NUCLEIC ACIDS RES. 9(12) 2889-2903 (1981).

Documentation
RNA polymerase holoenzymes of bacteria contain the major sigma factors that
play a central role in the initiation of transcription [1]. These sigma 
factors are important both in selective binding of RNA polymerase to 
promoters, and in the efficient initiation of transcription [2]: the 
sigma factor interacts with several subunits of the core polymerase, with 
DNA in the promoter region, with short nascent RNA, and perhaps weakly with
rifampicin bound to the core polymerase beta subunit [2]. The major factor 
can also be substituted with other factors in specialised conditions, such 
as heat shock, to allow the activation of transcription of genes required 
in these situations.
 
Most bacteria express a multiplicity of sigma factors. Two of these,
sigma-70 (generally known as the major or primary sigma factor) and 
sigma-54, direct the transcription of a wide variety of genes: the others
(known as alternative sigma factors) are required for the transcription of 
specific subsets of genes. 
 
SIGMA70FCT is a 5-element fingerprint that provides a signature for the 
sigma-70 proteins. The fingerprint was derived from an initial alignment
of 10 sequences: motif 1 spans a conserved region whose exact function is
unknown, but which may be involved in binding of the sigma factor to the
core RNA polymerase (cf. PROSITE pattern SIGMA70_1 (PS00715)); motifs 4
and 5 encompass a conserved region that appears to harbour a DNA-binding
helix-turn-helix motif, which is involved in binding the conserved region
of promoters recognised by the major sigma factors (cf. PROSITE pattern
SIGMA70_2 (PS00716)). Five iterations on OWL20.0 were required to reach
convergence, at which point a true set comprising 46 sequences was
identified. Several partial matches were also found.
 
An update on SPTR37_9f identified a true set of 155 sequences, and 51
partial matches.
Summary Information
 155 codes involving  5 elements
17 codes involving 4 elements
19 codes involving 3 elements
13 codes involving 2 elements
Composite Feature Index
5155155155155155
41711161410
318111468
2122912
12345
True Positives
HRDA_STRCO    HRDB_STRCO    HRDC_STRCO    HRDD_STRCO    
O08332 O08348 O08372 O22056
O22057 O22058 O22455 O22576
O24348 O24621 O24629 O24744
O30806 O32416 O32637 O32708
O33503 O33662 O33992 O48655
O49935 O50539 O51712 O51804
O52607 O52921 O54540 O66381
O67437 O67464 O69079 O82849
O83707 O83976 O84064 O87812
P71106 P71149 P73666 P73710
P74565 P77830 P77833 P77840
P77841 P77842 P77860 P77870
P77890 P77906 P77927 P77940
P77951 P77959 P77994 P77996
P94321 P94330 P94333 P94906
P95597 P95644 P95657 P96032
P96033 P96034 P96035 Q06384
Q39515 Q45302 Q45995 Q53611
Q55350 Q55525 Q59210 Q59302
Q59371 Q59409 Q59502 Q59531
Q59532 Q59552 Q59553 Q59563
Q59664 Q59753 Q59813 Q59814
Q59815 Q59823 Q59824 Q59836
Q59904 Q59913 Q59914 Q59965
Q60012 Q60158 Q60162 RP28_BACTK
RP32_AGRTU RP32_CAUCR RP32_ZYMMO RPOD_STRPN
RPOS_ECOLI RPOS_PSEAE RPOS_SALDU RPOS_SALTI
RPOS_SALTY RPOS_SHIFL RPOS_YEREN RPSA_BACSU
RPSB_ANASP RPSB_MYXXA RPSB_STIAU RPSC_ANASP
RPSC_MYXXA RPSC_SYNY3 RPSD_AGRTU RPSD_ANASP
RPSD_BACSU RPSD_BORBU RPSD_BUCAP RPSD_CAUCR
RPSD_CHLTR RPSD_CLOAB RPSD_ECOLI RPSD_ENTFA
RPSD_HAEIN RPSD_HELPY RPSD_LACLA RPSD_LACLC
RPSD_LEPIN RPSD_LISMO RPSD_MICAE RPSD_MYCGE
RPSD_MYCPN RPSD_MYXXA RPSD_NEIGO RPSD_PSEAE
RPSD_PSEFL RPSD_PSEPU RPSD_RHOCA RPSD_RICPR
RPSD_SALTY RPSD_STAAU RPSD_STRAU RPSD_SYNP7
RPSD_TREPA RPSK_BACSU RPSW_STRCO
True Positive Partials
Codes involving 4 elements
FLIA_ECOLI FLIA_PSEAE FLIA_SALTY FLIA_YEREN
O30967 O52258 O64419 O64420
Q48825 Q59264 Q60108 RP32_CITFR
RP32_ECOLI RP32_ENTCL RP32_PROMI RP32_PSEAE
RP32_SERMA
Codes involving 3 elements
O05385 O32722 O32725 O32728
O67268 O68453 O82848 O85017
P70879 RP32_HAEIN RP32_VIBCH RP35_BACTK
RPSE_BACSU RPSF_BACLI RPSF_BACME RPSF_BACSU
RPSG_BACSU RPSG_CLOAB YDT1_CORDI
Codes involving 2 elements
O21282 O50232 O52313 O85743
O86702 P71201 P96891 Q50547
Q55358 Q59590 RPOF_STRAU RPOF_STRCO
RPSE_CLOAB
Sequence Titles
HRDA_STRCO  RNA POLYMERASE PRINCIPAL SIGMA FACTOR HRDA - STREPTOMYCES COELICOLOR. 
HRDB_STRCO RNA POLYMERASE PRINCIPAL SIGMA FACTOR HRDB - STREPTOMYCES COELICOLOR.
HRDC_STRCO RNA POLYMERASE PRINCIPAL SIGMA FACTOR HRDC - STREPTOMYCES COELICOLOR.
HRDD_STRCO RNA POLYMERASE PRINCIPAL SIGMA FACTOR HRDD - STREPTOMYCES COELICOLOR.
O08332 RNA POLYMERASE SIGMA FACTOR - STAPHYLOCOCCUS AUREUS.
O08348 RNA POLYMERASE SIGMA FACTOR - XANTHOMONAS CAMPESTRIS.
O08372 RNA POLYMERASE SIGMA FACTOR - ENTEROBACTER CLOACAE.
O22056 PLASTID RNA POLYMERASE SIGMA-SUBUNIT - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O22057 PLASTID RNA POLYMERASE SIGMA-SUBUNIT PRECURSOR - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O22058 PLASTID RNA POLYMERASE SIGMA-SUBUNIT - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O22455 SIGMA FACTOR 2 - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O22576 RNA POLYMERASE SIGMA SUBUNIT 1 - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O24348 PLASTID RNA POLYMERASE SIGMA FACTOR - SORGHUM BICOLOR MILO (SORGHUM).
O24621 SIGMA FACTOR 3 - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O24629 SIGMA FACTOR 1 - ARABIDOPSIS THALIANA (MOUSE-EAR CRESS).
O24744 RNA POLYMERASE SIGMA FACTOR - SHEWANELLA SP.
O30806 HEAT SHOCK SIGMA FACTOR - RHODOBACTER CAPSULATUS (RHODOPSEUDOMONAS CAPSULATA).
O32416 RNA POLYMERASE SIGMA FACTOR - VIBRIO CHOLERAE.
O32637 RNA POLYMERASE SIGMA FACTOR - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
O32708 RNA POLYMERASE SIGMA FACTOR - KLUYVERA CITROPHILA (KLUYVERA CRYOCRESCENS).
O33503 RNA POLYMERASE SIGMA FACTOR - PSEUDOMONAS TOLAASII.
O33662 RNA POLYMERASE SIGMA FACTOR - STREPTOCOCCUS MUTANS.
O33992 RNA POLYMERASE SIGMA FACTOR - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
O48655 PLASTID RNA POLYMERASE SIGMA FACTOR - ORYZA SATIVA (RICE).
O49935 SINAPSIS ALBA SIG1 PROTEIN - SINAPIS ALBA (WHITE MUSTARD) (BRASSICA HIRTA).
O50539 RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES COELICOLOR.
O51712 RNA POLYMERASE SIGMA FACTOR - BORRELIA BURGDORFERI (LYME DISEASE SPIROCHETE).
O51804 RNA POLYMERASE SIGMA FACTOR RPOS - VIBRIO CHOLERAE.
O52607 ALTERNATIVE RNA SIGMA FACTOR RPOS - BURKHOLDERIA SOLANACEARUM (PSEUDOMONAS SOLANACEARUM).
O52921 RNA POLYMERASE SIGMA FACTOR - CAMPYLOBACTER JEJUNI.
O54540 RNA POLYMERASE SIGMA FACTOR - PSEUDOMONAS PUTIDA.
O66381 RNA POLYMERASE SIGMA FACTOR - BACILLUS SP.
O67437 RNA POLYMERASE SIGMA FACTOR RPOS - AQUIFEX AEOLICUS.
O67464 RNA POLYMERASE SIGMA FACTOR - AQUIFEX AEOLICUS.
O69079 RNA POLYMERASE SIGMA FACTOR - PSEUDOMONAS SYRINGAE (PV. TOMATO).
O82849 RNA POLYMERASE SIGMA FACTOR - PSEUDOMONAS HYDROGENOTHERMOPHILA.
O83707 RNA POLYMERASE SIGMA-28 FACTOR - TREPONEMA PALLIDUM.
O83976 RNA POLYMERASE SIGMA-43 FACTOR (SIGA) - TREPONEMA PALLIDUM.
O84064 SIGMA-28/WHIG FAMILY - CHLAMYDIA TRACHOMATIS.
O87812 RNA POLYMERASE SIGMA FACTOR - PSEUDOMONAS TOLAASII.
P71106 SIGB - CHLOROFLEXUS AURANTIACUS.
P71149 SIGA - CHLOROBIUM TEPIDUM.
P73666 RNA POLYMERASE SIGMA FACTOR - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
P73710 RNA POLYMERASE SIGMA FACTOR - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
P74565 RNA POLYMERASE SIGMA FACTOR - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
P77830 RNA POLYMERASE SIGMA FACTOR - BRADYRHIZOBIUM JAPONICUM.
P77833 RNA POLYMERASE SIGMA FACTOR - BORDETELLA PERTUSSIS.
P77840 RNA POLYMERASE SIGMA FACTOR - CHLOROFLEXUS AURANTIACUS.
P77841 RNA POLYMERASE SIGMA FACTOR - CHLOROFLEXUS AURANTIACUS.
P77842 RNA POLYMERASE SIGMA FACTOR - CHLOROFLEXUS AURANTIACUS.
P77860 RNA POLYMERASE SIGMA FACTOR - ERWINIA CAROTOVORA.
P77870 RNA POLYMERASE SIGMA FACTOR - HELIOBACILLUS MOBILIS.
P77890 RNA POLYMERASE SIGMA FACTOR - LEGIONELLA PNEUMOPHILA.
P77906 RNA POLYMERASE SIGMA FACTOR - MYCOBACTERIUM TUBERCULOSIS.
P77927 RNA POLYMERASE SIGMA FACTOR - PSEUDOMONAS PUTIDA.
P77940 RNA POLYMERASE SIGMA FACTOR - RHODOBACTER SPHAEROIDES (RHODOPSEUDOMONAS SPHAEROIDES).
P77951 RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES GRISEUS.
P77959 RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES ROSEOSPORUS.
P77994 RNA POLYMERASE SIGMA FACTOR - THERMOTOGA MARITIMA.
P77996 RNA POLYMERASE SIGMA FACTOR - THERMOANAEROBACTER THERMOSULFUROGENES (CLOSTRIDIUM THERMOSULFUROGENES).
P94321 RNA POLYMERASE SIGMA FACTOR - BRADYRHIZOBIUM JAPONICUM.
P94330 RNA POLYMERASE SIGMA FACTOR - BRADYRHIZOBIUM JAPONICUM.
P94333 RNA POLYMERASE SIGMA FACTOR - BRADYRHIZOBIUM JAPONICUM.
P94906 RNA POLYMERASE SIGMA FACTOR - MICROCYSTIS AERUGINOSA.
P95597 RNA POLYMERASE SIGMA FACTOR - RHIZOBIUM ETLI.
P95644 RNA POLYMERASE SIGMA FACTOR - RENIBACTERIUM SALMONINARUM.
P95657 RNA POLYMERASE SIGMA FACTOR - RHODOBACTER SPHAEROIDES (RHODOPSEUDOMONAS SPHAEROIDES).
P96032 SIGMA FACTOR - SYNECHOCOCCUS SP. (STRAIN PCC 7942) (ANACYSTIS NIDULANS R2).
P96033 RNA POLYMERASE SIGMA FACTOR - SYNECHOCOCCUS SP. (STRAIN PCC 7942) (ANACYSTIS NIDULANS R2).
P96034 SIGMA FACTOR - SYNECHOCOCCUS SP. (STRAIN PCC 7942) (ANACYSTIS NIDULANS R2).
P96035 RNA POLYMERASE SIGMA FACTOR - SYNECHOCOCCUS SP. (STRAIN PCC 7942) (ANACYSTIS NIDULANS R2).
Q06384 RNA POLYMERASE SIGMA FACTOR WHIG - STREPTOMYCES GRISEOCARNEUS.
Q39515 RNA POLYMERASE SIGMA-A FACTOR PRECURSOR (SIGA) - CYANIDIUM CALDARIUM (GALDIERIA SULPHURARIA).
Q45302 SIGA SIGMA FACTOR - BREVIBACTERIUM LACTOFERMENTUM.
Q45995 RNA POLYMERASE SIGMA FACTOR - CAULOBACTER CRESCENTUS.
Q53611 RNA POLYMERASE SIGMA C SUBUNIT - STIGMATELLA AURANTIACA.
Q55350 RNA POLYMERASE SIGMA FACTOR RPOD2 - SYNECHOCOCCUS SP. (STRAIN PCC 7942) (ANACYSTIS NIDULANS R2).
Q55525 RNA POLYMERASE SIGMA FACTOR - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
Q59210 RNA POLYMERASE SIGMA FACTOR - BREVIBACTERIUM LACTOFERMENTUM.
Q59302 RNA POLYMERASE SIGMA FACTOR - CHLAMYDIA PSITTACI.
Q59371 RNA POLYMERASE SIGMA FACTOR - ESCHERICHIA COLI.
Q59409 RNA POLYMERASE SIGMA FACTOR - ESCHERICHIA COLI.
Q59502 RNA POLYMERASE SIGMA FACTOR - MYCOBACTERIUM BOVIS.
Q59531 RNA POLYMERASE SIGMA FACTOR - MYCOBACTERIUM LEPRAE.
Q59532 RNA POLYMERASE SIGMA FACTOR - MYCOBACTERIUM LEPRAE.
Q59552 RNA POLYMERASE SIGMA FACTOR - MYCOBACTERIUM SMEGMATIS.
Q59553 RNA POLYMERASE SIGMA FACTOR - MYCOBACTERIUM SMEGMATIS.
Q59563 RNA POLYMERASE SIGMA FACTOR - MYCOBACTERIUM TUBERCULOSIS.
Q59664 RNA POLYMERASE SIGMA FACTOR - PSEUDOMONAS FLUORESCENS.
Q59753 RNA POLYMERASE SIGMA FACTOR - RHIZOBIUM MELILOTI.
Q59813 RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES AUREOFACIENS.
Q59814 RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES AUREOFACIENS.
Q59815 RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES AUREOFACIENS.
Q59823 RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES AUREOFACIENS.
Q59824 RNA POLYMERASE SIGMA FACTOR - STIGMATELLA AURANTIACA.
Q59836 RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES COELICOLOR.
Q59904 RNA POLYMERASE SIGMA FACTOR - SERRATIA ENTOMOPHILA.
Q59913 RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES GRISEUS.
Q59914 RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES GRISEUS.
Q59965 RNA POLYMERASE SIGMA FACTOR - SYNECHOCOCCUS SP.
Q60012 RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES VIRIDIFACIENS.
Q60158 RNA POLYMERASE SIGMA FACTOR - MYCOBACTERIUM BOVIS.
Q60162 RNA POLYMERASE SIGMA FACTOR - MYCOBACTERIUM TUBERCULOSIS, AND MYCOBACTERIUM BOVIS.
RP28_BACTK RNA POLYMERASE SIGMA-28 FACTOR PRECURSOR - BACILLUS THURINGIENSIS (SUBSP. KURSTAKI).
RP32_AGRTU RNA POLYMERASE SIGMA-32 FACTOR - AGROBACTERIUM TUMEFACIENS.
RP32_CAUCR RNA POLYMERASE SIGMA-32 FACTOR - CAULOBACTER CRESCENTUS.
RP32_ZYMMO RNA POLYMERASE SIGMA-32 FACTOR - ZYMOMONAS MOBILIS.
RPOD_STRPN RNA POLYMERASE SIGMA FACTOR RPOD - STREPTOCOCCUS PNEUMONIAE.
RPOS_ECOLI RNA POLYMERASE SIGMA FACTOR RPOS (SIGMA-38) - ESCHERICHIA COLI.
RPOS_PSEAE RNA POLYMERASE SIGMA FACTOR RPOS - PSEUDOMONAS AERUGINOSA.
RPOS_SALDU RNA POLYMERASE SIGMA FACTOR RPOS (SIGMA-38) - SALMONELLA DUBLIN.
RPOS_SALTI RNA POLYMERASE SIGMA FACTOR RPOS (SIGMA-38) - SALMONELLA TYPHI.
RPOS_SALTY RNA POLYMERASE SIGMA FACTOR RPOS (SIGMA-38) - SALMONELLA TYPHIMURIUM.
RPOS_SHIFL RNA POLYMERASE SIGMA FACTOR RPOS - SHIGELLA FLEXNERI.
RPOS_YEREN RNA POLYMERASE SIGMA FACTOR RPOS - YERSINIA ENTEROCOLITICA.
RPSA_BACSU RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-A) (SIGMA-43) - BACILLUS SUBTILIS.
RPSB_ANASP RNA POLYMERASE SIGMA-B FACTOR - ANABAENA SP. (STRAIN PCC 7120).
RPSB_MYXXA RNA POLYMERASE SIGMA-B FACTOR - MYXOCOCCUS XANTHUS.
RPSB_STIAU RNA POLYMERASE SIGMA-B FACTOR - STIGMATELLA AURANTIACA.
RPSC_ANASP RNA POLYMERASE SIGMA-C FACTOR - ANABAENA SP. (STRAIN PCC 7120).
RPSC_MYXXA RNA POLYMERASE SIGMA-C FACTOR - MYXOCOCCUS XANTHUS.
RPSC_SYNY3 PROBABLE RNA POLYMERASE SIGMA-C FACTOR - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
RPSD_AGRTU RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-A) (MAJOR VEGETATIVE SIGMA FACTOR) - AGROBACTERIUM TUMEFACIENS.
RPSD_ANASP RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-A) - ANABAENA SP. (STRAIN PCC 7120).
RPSD_BACSU RNA POLYMERASE SIGMA-D FACTOR (SIGMA-28) - BACILLUS SUBTILIS.
RPSD_BORBU RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - BORRELIA BURGDORFERI (LYME DISEASE SPIROCHETE).
RPSD_BUCAP RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - BUCHNERA APHIDICOLA.
RPSD_CAUCR RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - CAULOBACTER CRESCENTUS.
RPSD_CHLTR RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) (SIGMA-A) - CHLAMYDIA TRACHOMATIS.
RPSD_CLOAB RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-A) (MAJOR VEGETATIVE SIGMA FACTOR) - CLOSTRIDIUM ACETOBUTYLICUM.
RPSD_ECOLI RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - ESCHERICHIA COLI.
RPSD_ENTFA RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-42) - ENTEROCOCCUS FAECALIS (STREPTOCOCCUS FAECALIS).
RPSD_HAEIN RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - HAEMOPHILUS INFLUENZAE.
RPSD_HELPY RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - HELICOBACTER PYLORI (CAMPYLOBACTER PYLORI).
RPSD_LACLA RNA POLYMERASE SIGMA FACTOR RPOD - LACTOCOCCUS LACTIS (SUBSP. LACTIS) (STREPTOCOCCUS LACTIS).
RPSD_LACLC RNA POLYMERASE SIGMA FACTOR RPOD - LACTOCOCCUS LACTIS (SUBSP. LACTIS) (STREPTOCOCCUS LACTIS).
RPSD_LEPIN RNA POLYMERASE SIGMA FACTOR RPOD - LEPTOSPIRA INTERROGANS.
RPSD_LISMO RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-43) - LISTERIA MONOCYTOGENES.
RPSD_MICAE RNA POLYMERASE SIGMA FACTOR RPOD1 - MICROCYSTIS AERUGINOSA.
RPSD_MYCGE RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-A) - MYCOPLASMA GENITALIUM.
RPSD_MYCPN RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-A) - MYCOPLASMA PNEUMONIAE.
RPSD_MYXXA RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-80) - MYXOCOCCUS XANTHUS.
RPSD_NEIGO RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - NEISSERIA GONORRHOEAE.
RPSD_PSEAE RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - PSEUDOMONAS AERUGINOSA.
RPSD_PSEFL RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - PSEUDOMONAS FLUORESCENS.
RPSD_PSEPU RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - PSEUDOMONAS PUTIDA.
RPSD_RHOCA RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - RHODOBACTER CAPSULATUS (RHODOPSEUDOMONAS CAPSULATA).
RPSD_RICPR RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - RICKETTSIA PROWAZEKII.
RPSD_SALTY RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-70) - SALMONELLA TYPHIMURIUM.
RPSD_STAAU RNA POLYMERASE SIGMA FACTOR RPOD - STAPHYLOCOCCUS AUREUS.
RPSD_STRAU RNA POLYMERASE SIGMA FACTOR RPOD - STREPTOMYCES AUREOFACIENS.
RPSD_SYNP7 RNA POLYMERASE SIGMA FACTOR RPOD1 - SYNECHOCOCCUS SP. (STRAIN PCC 7942) (ANACYSTIS NIDULANS R2).
RPSD_TREPA RNA POLYMERASE SIGMA FACTOR RPOD (SIGMA-A) (MAJOR VEGETATIVE SIGMA FACTOR) - TREPONEMA PALLIDUM.
RPSK_BACSU RNA POLYMERASE SIGMA-K FACTOR PRECURSOR (SIGMA-27) - BACILLUS SUBTILIS.
RPSW_STRCO RNA POLYMERASE SIGMA FACTOR WHIG - STREPTOMYCES COELICOLOR.

FLIA_ECOLI RNA POLYMERASE SIGMA FACTOR FOR FLAGELLAR OPERON (SIGMA-F FACTOR) (SIGMA-27) (SIGMA-28) - ESCHERICHIA COLI.
FLIA_PSEAE RNA POLYMERASE SIGMA FACTOR FOR FLAGELLAR OPERON (SIGMA-F FACTOR) (SIGMA-28) - PSEUDOMONAS AERUGINOSA.
FLIA_SALTY RNA POLYMERASE SIGMA FACTOR FOR FLAGELLAR OPERON (SIGMA-F FACTOR) (SIGMA-27) (SIGMA-28) - SALMONELLA TYPHIMURIUM.
FLIA_YEREN RNA POLYMERASE SIGMA FACTOR FOR FLAGELLAR OPERON (SIGMA-F FACTOR) (SIGMA-27) (SIGMA-28) - YERSINIA ENTEROCOLITICA.
O30967 GROUP 2 ALTERNATIVE SIGMA FACTOR - NOSTOC PUNCTIFORME.
O52258 FLIA - PSEUDOMONAS PUTIDA.
O64419 RNA POLYMERASE SIGMA-B FACTOR PRECURSOR (SIGB) - CYANIDIUM CALDARIUM (GALDIERIA SULPHURARIA).
O64420 RNA POLYMERASE SIGMA-C FACTOR PRECURSOR (SIGC) - CYANIDIUM CALDARIUM (GALDIERIA SULPHURARIA).
Q48825 SIGNMA FACTOR 28 - LEGIONELLA PNEUMOPHILA.
Q59264 RNA POLYMERASE SIGMA FACTOR - CLOSTRIDIUM ACETOBUTYLICUM.
Q60108 RNA POLYMERASE SIGMA FACTOR - YERSINIA ENTEROCOLITICA.
RP32_CITFR RNA POLYMERASE SIGMA-32 FACTOR (HEAT SHOCK REGULATORY PROTEIN) - CITROBACTER FREUNDII.
RP32_ECOLI RNA POLYMERASE SIGMA-32 FACTOR (HEAT SHOCK REGULATORY PROTEIN F33.4) - ESCHERICHIA COLI.
RP32_ENTCL RNA POLYMERASE SIGMA-32 FACTOR - ENTEROBACTER CLOACAE.
RP32_PROMI RNA POLYMERASE SIGMA-32 FACTOR - PROTEUS MIRABILIS.
RP32_PSEAE RNA POLYMERASE SIGMA-32 FACTOR - PSEUDOMONAS AERUGINOSA.
RP32_SERMA RNA POLYMERASE SIGMA-32 FACTOR - SERRATIA MARCESCENS.

O05385 HEAT SHOCK SIGMA FACTOR 32 - BUCHNERA APHIDICOLA.
O32722 RNA POLYMERASE SIGMA FACTOR - PAENIBACILLUS POLYMYXA (BACILLUS POLYMYXA).
O32725 RNA POLYMERASE SIGMA FACTOR - BACILLUS SPHAERICUS.
O32728 SIGMA FACTOR - BACILLUS STEAROTHERMOPHILUS.
O67268 RNA POLYMERASE SIGMA FACTOR FLIA - AQUIFEX AEOLICUS.
O68453 RNA POLYMERASE SIGMA FACTOR - XANTHOMONAS CAMPESTRIS (PV. CAMPESTRIS).
O82848 RNA POLYMERASE SIGMA FACTOR - ALCALIGENES XYLOSOXYDANS XYLOSOXYDANS (ACHROMOBACTER XYLOSOXIDANS).
O85017 SIGMA B - LISTERIA INNOCUA.
P70879 SIGMA FACTOR - BACILLUS COAGULANS.
RP32_HAEIN RNA POLYMERASE SIGMA-32 FACTOR - HAEMOPHILUS INFLUENZAE.
RP32_VIBCH RNA POLYMERASE SIGMA-32 FACTOR - VIBRIO CHOLERAE.
RP35_BACTK RNA POLYMERASE SIGMA-35 FACTOR PRECURSOR - BACILLUS THURINGIENSIS (SUBSP. KURSTAKI).
RPSE_BACSU RNA POLYMERASE SIGMA-E FACTOR PRECURSOR (SIGMA-29) (P31) (STAGE II SPORULATION PROTEIN GB) - BACILLUS SUBTILIS.
RPSF_BACLI RNA POLYMERASE SIGMA-F FACTOR (STAGE II SPORULATION PROTEIN AC) (SPORULATION SIGMA FACTOR) - BACILLUS LICHENIFORMIS.
RPSF_BACME RNA POLYMERASE SIGMA-F FACTOR (STAGE II SPORULATION PROTEIN AC) (SPORULATION SIGMA FACTOR) - BACILLUS MEGATERIUM.
RPSF_BACSU RNA POLYMERASE SIGMA-F FACTOR (STAGE II SPORULATION PROTEIN AC) (SPORULATION SIGMA FACTOR) - BACILLUS SUBTILIS.
RPSG_BACSU RNA POLYMERASE SIGMA-G FACTOR (STAGE III SPORULATION PROTEIN G) - BACILLUS SUBTILIS.
RPSG_CLOAB RNA POLYMERASE SIGMA-G FACTOR - CLOSTRIDIUM ACETOBUTYLICUM.
YDT1_CORDI HYPOTHETICAL 16.2 KD PROTEIN IN DTXR 5'REGION - CORYNEBACTERIUM DIPHTHERIAE.

O21282 TRANSLATION INITIATION FACTOR SIGMA - RECLINOMONAS AMERICANA.
O50232 SIGMA-B GENERAL STRESS TRANSCRIPTION FACTOR - BACILLUS LICHENIFORMIS.
O52313 PUTATIVE RNA POLYMERASE SECONDARY SIGMA FACTOR - STREPTOMYCES COELICOLOR.
O85743 RNA POLYMERASE SIGMA B - LISTERIA MONOCYTOGENES.
O86702 PUTATIVE RNA POLYMERASE SIGMA FACTOR - STREPTOMYCES COELICOLOR.
P71201 RNA POLYMERASE SIGMA SUBUNIT, TRUNCATED FORM OF SIGMA-38 - ESCHERICHIA COLI.
P96891 SIGF - MYCOBACTERIUM TUBERCULOSIS.
Q50547 STRESS RESPONSE/STATIONARY PHASE SIGMA FACTOR - MYCOBACTERIUM TUBERCULOSIS.
Q55358 SIGMA FACTOR - STREPTOMYCES SETONII.
Q59590 RNA POLYMERASE SIGMA FACTOR - MYXOCOCCUS XANTHUS.
RPOF_STRAU RNA POLYMERASE SIGMA-F FACTOR - STREPTOMYCES AUREOFACIENS.
RPOF_STRCO RNA POLYMERASE SIGMA-F FACTOR - STREPTOMYCES COELICOLOR.
RPSE_CLOAB RNA POLYMERASE SIGMA-E FACTOR - CLOSTRIDIUM ACETOBUTYLICUM.
Scan History
OWL20_0    5  170  NSINGLE    
OWL26_0 2 300 NSINGLE
SPTR37_9f 4 320 NSINGLE
Initial Motifs
Motif 1  width=14
Element Seqn Id St Int Rpt
DLFQVGCIGLMKSI RPSG_BACSU 67 67 -
DLIQEGNIGLMKAV RP70_ECOLI 403 403 -
DFVSSGVFGLIDAI RPSW_STRCO 77 77 -
DLIEEGNLGLIRAV RPOS_ECOLI 130 130 -
DLIQEGNIGLMKAV RP70_SALTY 405 405 -
DLIQEGNIGLMKAV RP80_MYXXA 498 498 -
DLVQEGNLGLIRAV RPSA_STRAU 108 108 -
DLISIGTIGLIKAV RPSE_BACSU 86 86 -
DLIQEGSLGLIRAA RPSA_ANASP 182 182 -
DLLQAGGIGLLNAV FLIA_SALTY 43 43 -

Motif 2 width=9
Element Seqn Id St Int Rpt
FSTYATWWI RP80_MYXXA 522 10 -
FSTYATWWI RPSA_STRAU 132 10 -
LATYASRCI RPSE_BACSU 110 10 -
FSTYATWWI RPSA_ANASP 206 10 -
FTTYAVQRI FLIA_SALTY 67 10 -
FSTYAVPMI RPSG_BACSU 91 10 -
FETYAITRI RPSW_STRCO 101 10 -
FSTYATWWI RPOS_ECOLI 154 10 -
FSTYATWWI RP70_ECOLI 427 10 -
FSTYATWWI RP70_SALTY 429 10 -

Motif 3 width=13
Element Seqn Id St Int Rpt
LNEREKQIMELRF RPSE_BACSU 184 65 -
LSPRERDVLRLRY RPSA_ANASP 329 114 -
LPEREKTVVTLYY RPSW_STRCO 228 118 -
LNAKQREVLARRF RPOS_ECOLI 278 115 -
LPEREQLVLTLYY FLIA_SALTY 189 113 -
LNDREKMILRKRF RPSG_BACSU 211 111 -
LTAREAKVLRMRF RP70_ECOLI 551 115 -
LTAREAKVLRMRF RP70_SALTY 553 115 -
LTPREEKVLRMRF RP80_MYXXA 646 115 -
LGERERKVVQLRY RPSA_STRAU 256 115 -

Motif 4 width=16
Element Seqn Id St Int Rpt
TQMEVAEEIGISQAQV RPSG_BACSU 228 4 -
TLEEVGKQFDVTRERI RP70_ECOLI 572 8 -
TLEEVGKQFDVTRERI RP70_SALTY 574 8 -
TLEEVGQDFEVTRERI RP80_MYXXA 667 8 -
TLEEIGRIFGVTRERI RPSA_STRAU 277 8 -
TQKDVADMMGISQSYI RPSE_BACSU 205 8 -
TLEEIGQIFNVTRERI RPSA_ANASP 350 8 -
NLKEIGAVLEVGESRV FLIA_SALTY 206 4 -
TLEDVGREIGLTRERV RPOS_ECOLI 299 8 -
TLAEIGNVLGVTESRV RPSW_STRCO 245 4 -

Motif 5 width=12
Element Seqn Id St Int Rpt
IRQIEAKALRKL RPSA_ANASP 365 -1 -
ISRLEKRIIKRL RPSE_BACSU 220 -1 -
IRQIESKTLNKL RPSA_STRAU 292 -1 -
IRQIEAKALRKL RP80_MYXXA 682 -1 -
IRQIEAKALRKL RP70_SALTY 589 -1 -
IRQIEAKALRKL RP70_ECOLI 587 -1 -
VRQIQVEGLRRL RPOS_ECOLI 314 -1 -
VSQIHTKSVLQL RPSW_STRCO 260 -1 -
VSQLHSQAIKRL FLIA_SALTY 221 -1 -
VSRLEKAAIKQM RPSG_BACSU 243 -1 -
Final Motifs
Motif 1  width=14
Element Seqn Id St Int Rpt
DLIQEGNMGLIKAV RPSD_LEPIN 168 168 -
DLIQEGNLGLIKAV RPSD_CLOAB 169 169 -
DLIQEGNLGLIKAV P77870 124 124 -
DLIQEGNIGLMKAV O08348 411 411 -
DLIQEGNIGLMKAV RPSD_HAEIN 419 419 -
DLIQEGNIGLMKAV P77890 407 407 -
DLIQEGNIGLMKAV P77833 522 522 -
DLIQEGNMGLIKAV O08332 159 159 -
DLIQEGNMGLIKAV O66381 163 163 -
DLIQEGNMGLIKAV RPSD_STAAU 159 159 -
DLIQEGNIGLMKAV O24744 404 404 -
DLIQEGNIGLMKAV O54540 406 406 -
DLIQEGNIGLMKAV O87812 406 406 -
DLIQEGNIGLMKAV Q59371 393 393 -
DLIQEGNIGLMKAV RPSD_BUCAP 407 407 -
DLIQEGNIGLMKAV RPSD_ECOLI 403 403 -
DLIQEGNIGLMKAV RPSD_PSEAE 407 407 -
DLIQEGNIGLMKAV RPSD_PSEFL 405 405 -
DLIQEGNIGLMKAV RPSD_SALTY 405 405 -
DLIQEGNMGLMKAV RPSD_ENTFA 159 159 -
DLIQEGNIGLMKAV RPSD_NEIGO 427 427 -
DLIQEGNMGLMKAV RPSD_LISMO 165 165 -
DLIQEGNIGLMKAV P94321 509 509 -
DLIQEGNIGLMKAV RPSD_RHOCA 464 464 -
DLIQEGNIGLMKAV RPSD_CAUCR 442 442 -
DLIQEGNIGLMKAV Q59753 474 474 -
DLIQEGNIGLMKAV P95597 475 475 -
DLIQEGNIGLMKAV RPSD_MYXXA 498 498 -
DLIQEGNIGLMKAV Q59824 496 496 -
DLIQEGNIGLMKAV RPSD_RICPR 410 410 -
DLIHEGNMGLMKAV RPSA_BACSU 162 162 -
DLIQEGNIGLMKAV RPSD_PSEPU 404 404 -
DLIQEGNMGLMKAV RPOD_STRPN 159 159 -
DLIQEGNMGLMKAV O33662 161 161 -
DLIQEGNIGLMKAV P77940 456 456 -
DLIQEGNIGLLKAV P77994 181 181 -
DLIQEGSLGLIRAA P74565 217 217 -
DLIQEGSLGLIRAA RPSD_MICAE 208 208 -
DLIQEGSLGLIRAA RPSD_ANASP 182 182 -
DLIQEGSLGLIRAA RPSD_SYNP7 176 176 -
DLIQEGSLGLIRAA Q59965 167 167 -
DLIQEGNMGLMKAV RPSD_LACLA 132 132 -
DLIQEGNMGLMKAV RPSD_LACLC 132 132 -
DLIQEGSLGLLRAI P77842 187 187 -
DLIQEGSIGLIRGV Q39515 380 380 -
DLIQEGNMGLMKAV Q59302 345 345 -
DLIQEGNMGLMKAV RPSD_CHLTR 345 345 -
DLIQEGNLGLIRAV Q59502 319 319 -
DLIQEGNLGLIRAV Q59532 365 365 -
DLIQEGNLGLIRAV Q59552 257 257 -
DLIQEGNLGLIRAV Q60158 319 319 -
DLIQEGNLGLIRAV Q60162 319 319 -
DLVQEGNIGLIKAV RPSD_TREPA 401 401 -
DLIQEGNIGLMKAV O32637 474 474 -
DLIQEGNIGLMKAV RPSD_HELPY 460 460 -
DLIQEGNIGLMKAV O33992 469 469 -
DLIQEGNIGLMKAV O52921 409 409 -
DLVQEGNIGLIKAV RPSD_BORBU 419 419 -
DLIQEGNLGLIRAV Q59913 301 301 -
DLIQEGNLGLIRAV Q59813 316 316 -
DLIQEGNLGLIRAV P77951 305 305 -
DLIQEGNLGLIRAV O50539 302 302 -
DLIQEGNLGLIRAV HRDB_STRCO 233 233 -
DLVQEGNLGLIRAV RPSD_STRAU 108 108 -
DLIQEGNMGLIRAV P95644 253 253 -
DLVQEGNIGLMRAV P77840 134 134 -
DLVQEGNLGLIRAV HRDA_STRCO 187 187 -
DLIQEGNIGLMKAV O67464 366 366 -
DLIQEGNVGLIRAV Q59814 319 319 -
DLIQEGNLGLIRAV Q45302 288 288 -
DLIQEGNIGLMKAV RPSD_AGRTU 474 474 -
DLVQEGNIGLMRAV P71106 137 137 -
DLIQEGNLGLIRAM Q59553 110 110 -
DLIQEGTLGLERAV P96035 187 187 -
DLIQEGNLGLIRAM P77906 136 136 -
DLIQEGNLGLIRAM Q59563 114 114 -
DLIQEGNLGLIRAM Q59531 110 110 -
DLIQEGAIGLNRAA P96033 155 155 -
DLIEEGNLGLIRAV RPOS_PSEAE 123 123 -
DLIQEGAIGLNRAA P73710 160 160 -
DLIQEGAIGLNRAA P94906 167 167 -
DLIQEGNLGLIRAM Q59210 122 122 -
DLIEEGNLGLIRAV O51804 119 119 -
DLIQEGTLGLERAV RPSC_SYNY3 193 193 -
DLIEEGNLGLIRAV O08372 134 134 -
DLIEEGNLGLIRAV O32708 133 133 -
DLIEEGNLGLIRAV P77860 118 118 -
DLIEEGNLGLIRAV Q59409 130 130 -
DLIEEGNLGLIRAV RPOS_ECOLI 130 130 -
DLIEEGNLGLIRAV RPOS_SALDU 118 118 -
DLIEEGNLGLIRAV RPOS_SALTY 118 118 -
DLIEEGNLGLIRAV RPOS_YEREN 119 119 -
DLVQEGTLGLERAV RPSC_ANASP 205 205 -
DLIEEGNLGLIRAV RPOS_SHIFL 130 130 -
DLIEEGNLGLIRAV Q59904 120 120 -
DLIEEGNLGLIRAV O69079 124 124 -
DLIEEGNLGLIRAV Q59664 124 124 -
DLIQEGNAGLVRAV HRDD_STRCO 124 124 -
DLIQEGSVGLMGAV P77841 101 101 -
DLIQEGNAGLVRAV Q59914 124 124 -
DLIEEGNLGLIRAV O33503 125 125 -
DLIEEGNLGLIRAV P77927 124 124 -
DLIQEGNAGLVRAV Q60012 124 124 -
DLIQEGNAGLVRAV Q59815 117 117 -
DLIEEGNLGLIRAV O32416 119 119 -
DLIEEGNLGLIRAV RPOS_SALTI 118 118 -
DLIQEGNLGLLKAI RPSD_MYCGE 274 274 -
DLVQEGCRGLVRGA O22056 360 360 -
DLVQEGCRGLVRGA O22455 362 362 -
DLIEEGNLGLMHAI O52607 164 164 -
DLIQEGNLGLLKAI RPSD_MYCPN 276 276 -
DLIQEGTIGMQRGV P73666 111 111 -
DVIQEGNLGLIRAV HRDC_STRCO 130 130 -
DLINEGNLGLIKAA P71149 90 90 -
DLVQEGLIGLLTAI P77996 52 52 -
DLIQEGTIGMQRGV P96034 111 111 -
DLIQEGALGLERGV RPSB_ANASP 125 125 -
ELIAAGNLGLLEAA O67437 70 70 -
DLIQEGSLGLERGV P96032 120 120 -
EVISEGNVGLMQAV RP32_CAUCR 76 76 -
EVISEGNVGLMQAV Q45995 76 76 -
ELISEGNIGLMQGV RP32_ZYMMO 81 81 -
DLIQEGSLGLERGV Q55525 137 137 -
DLIQEGNLGLIRAA O51712 69 69 -
EVISEANVGLMQAV O30806 77 77 -
DLIQEGNIGLMKAV RPSB_STIAU 74 74 -
EVISEANVGLMQAV P95657 77 77 -
DLIQEGNIGLMKAV RPSB_MYXXA 25 25 -
DLIQEGNVGLLKAV O82849 98 98 -
DLIQEANIGLMKAV RPSC_MYXXA 73 73 -
DLIQEANIGLMKAV Q53611 71 71 -
DLIAEANLGLVIAA P94333 86 86 -
DLIQEGTLGLERGV Q55350 113 113 -
DLISEGNIGLLTAA O83976 88 88 -
EIVSEGNIGLMQAV P77830 77 77 -
EVVSEGNVGLMQAV P94330 77 77 -
EVVSEGNVGLMQAV RP32_AGRTU 77 77 -
DLIQGGLIGLLRGI O24348 285 285 -
DLIQGGLIGLLRGI O48655 304 304 -
DLVQGGLIGLLRGI O49935 266 266 -
DLVQGGLIGLLRGI O22057 287 287 -
DLVQGGLIGLLRGI O22576 287 287 -
DLVQGGLIGLLRGI O24629 287 287 -
DLIQAGYVGVLQGA O22058 360 360 -
DLIQAGYVGVLQGA O24621 360 360 -
DLVSYGIFGLFDAI O83707 57 57 -
DLMSLGMLGLYDAL RPSD_BACSU 54 54 -
DLYALGVEGLIRAV O84064 52 52 -
DLISIGTIGLIKAI RP28_BACTK 77 77 -
DFVSSGIFGLIDAI Q06384 75 75 -
DFVSSGVFGLIDAI RPSW_STRCO 77 77 -
DFVSSGVFGLIDAI Q59836 55 55 -
DFVSSGVFGLIDAI Q59823 75 75 -
DFVSSGVFGLIDAI P77959 75 75 -
DLISIGTIGLIKGI RPSK_BACSU 79 79 -

Motif 2 width=9
Element Seqn Id St Int Rpt
FSTYATWWI RPSD_LEPIN 192 10 -
FSTYATWWI RPSD_CLOAB 193 10 -
FSTYATWWI P77870 148 10 -
FSTYATWWI O08348 435 10 -
FSTYATWWI RPSD_HAEIN 443 10 -
FSTYATWWI P77890 431 10 -
FSTYATWWI P77833 546 10 -
FSTYATWWI O08332 183 10 -
FSTYATWWI O66381 187 10 -
FSTYATWWI RPSD_STAAU 183 10 -
FSTYATWWI O24744 428 10 -
FSTYATWWI O54540 430 10 -
FSTYATWWI O87812 430 10 -
FSTYATWWI Q59371 417 10 -
FSTYATWWI RPSD_BUCAP 431 10 -
FSTYATWWI RPSD_ECOLI 427 10 -
FSTYATWWI RPSD_PSEAE 431 10 -
FSTYATWWI RPSD_PSEFL 429 10 -
FSTYATWWI RPSD_SALTY 429 10 -
FSTYATWWI RPSD_ENTFA 183 10 -
FSTYATWWI RPSD_NEIGO 451 10 -
FSTYATWWI RPSD_LISMO 189 10 -
FSTYATWWI P94321 533 10 -
FSTYATWWI RPSD_RHOCA 488 10 -
FSTYATWWI RPSD_CAUCR 466 10 -
FSTYATWWI Q59753 498 10 -
FSTYATWWI P95597 499 10 -
FSTYATWWI RPSD_MYXXA 522 10 -
FSTYATWWI Q59824 520 10 -
FSTYATWWI RPSD_RICPR 434 10 -
FSTYATWWI RPSA_BACSU 186 10 -
FSTYATWWI RPSD_PSEPU 428 10 -
FSTYATWWI RPOD_STRPN 183 10 -
FSTYATWWI O33662 185 10 -
FSTYATWWI P77940 480 10 -
FSTYATWWI P77994 205 10 -
FSTYATWWI P74565 241 10 -
FSTYATWWI RPSD_MICAE 232 10 -
FSTYATWWI RPSD_ANASP 206 10 -
FSTYATWWI RPSD_SYNP7 200 10 -
FSTYATWWI Q59965 191 10 -
FSTYATWWI RPSD_LACLA 156 10 -
FSTYATWWI RPSD_LACLC 156 10 -
FSTYATWWI P77842 211 10 -
FSTYATWWI Q39515 404 10 -
FSTYATWWI Q59302 369 10 -
FSTYATWWI RPSD_CHLTR 369 10 -
FSTYATWWI Q59502 343 10 -
FSTYATWWI Q59532 389 10 -
FSTYATWWI Q59552 281 10 -
FSTYATWWI Q60158 343 10 -
FSTYATWWI Q60162 343 10 -
FSTYATWWI RPSD_TREPA 425 10 -
FSTYATWWI O32637 498 10 -
FSTYATWWI RPSD_HELPY 484 10 -
FSTYATWWI O33992 493 10 -
FSTYATWWI O52921 433 10 -
FSTYATWWI RPSD_BORBU 443 10 -
FSTYATWWI Q59913 325 10 -
FSTYATWWI Q59813 340 10 -
FSTYATWWI P77951 329 10 -
FSTYATWWI O50539 326 10 -
FSTYATWWI HRDB_STRCO 257 10 -
FSTYATWWI RPSD_STRAU 132 10 -
FSTYATWWI P95644 277 10 -
FSTYATWWI P77840 158 10 -
FSTYATWWI HRDA_STRCO 211 10 -
FSTYATWWI O67464 390 10 -
FSTYATWWI Q59814 343 10 -
FSTYATWWI Q45302 312 10 -
FSTYATWWI RPSD_AGRTU 498 10 -
FSTYATWWI P71106 161 10 -
FSTYATWWI Q59553 134 10 -
FSTYAYWWI P96035 211 10 -
FSTYATWWI P77906 160 10 -
FSTYATWWI Q59563 138 10 -
FSTYATWWI Q59531 134 10 -
FSTYAYWWI P96033 179 10 -
FSTYATWWI RPOS_PSEAE 147 10 -
FSTYAYWWI P73710 184 10 -
FSTYAYWWI P94906 191 10 -
FSTYATWWI Q59210 146 10 -
FSTYATWWI O51804 143 10 -
FSTYSYWWI RPSC_SYNY3 217 10 -
FSTYATWWI O08372 158 10 -
FSTYATWWI O32708 157 10 -
FSTYATWWI P77860 142 10 -
FSTYATWWI Q59409 154 10 -
FSTYATWWI RPOS_ECOLI 154 10 -
FSTYATWWI RPOS_SALDU 142 10 -
FSTYATWWI RPOS_SALTY 142 10 -
FSTYATWWI RPOS_YEREN 143 10 -
FSTYAYWWI RPSC_ANASP 229 10 -
FSTYATWWI RPOS_SHIFL 154 10 -
FSTYATWWI Q59904 144 10 -
FSTYATWWI O69079 148 10 -
FSTYATWWI Q59664 148 10 -
FSTYATWWI HRDD_STRCO 148 10 -
FSTYATYWI P77841 125 10 -
FSTYATWWI Q59914 148 10 -
FSTYATWWI O33503 149 10 -
FSTYATWWI P77927 148 10 -
FSTYATWWI Q60012 148 10 -
FSTYATWWI Q59815 141 10 -
FSTYTTWWI O32416 143 10 -
FSTYATWWI RPOS_SALTI 142 10 -
FSTYATWWI RPSD_MYCGE 298 10 -
FSTYAHWWI O22056 384 10 -
FSTYAHWWI O22455 386 10 -
FSTYATWWI O52607 188 10 -
FSTYATWWI RPSD_MYCPN 300 10 -
FSTYAYWWI P73666 135 10 -
FSTYATWWI HRDC_STRCO 154 10 -
FISYAVWWI P71149 114 10 -
FSTYATWYI P77996 76 10 -
FSTYAYWWI P96034 135 10 -
FSTYAYWWI RPSB_ANASP 149 10 -
FISYAVWWI O67437 94 10 -
FSTYAYWWI P96032 144 10 -
LATYAMWWI RP32_CAUCR 100 10 -
LATYAMWWI Q45995 100 10 -
LATYAIWWI RP32_ZYMMO 105 10 -
FSTYAYWWI Q55525 161 10 -
FSTYASFWI O51712 93 10 -
LATYAMWWI O30806 101 10 -
LISYAVWWI RPSB_STIAU 98 10 -
LATYAMWWI P95657 101 10 -
LISYAVWWI RPSB_MYXXA 49 10 -
FITFAAYWI O82849 122 10 -
LISYAVWWI RPSC_MYXXA 97 10 -
LISYAVWWI Q53611 95 10 -
FSTYAIWWI P94333 110 10 -
FSTYAYWWI Q55350 137 10 -
FISYAACWI O83976 112 10 -
LATYAMWWI P77830 101 10 -
LATYAMWWI P94330 101 10 -
LATYAMWWI RP32_AGRTU 101 10 -
ISTYVYWWI O24348 309 10 -
ISTYVYWWI O48655 328 10 -
ISTYVYWWI O49935 290 10 -
ISTYVYWWI O22057 311 10 -
ISTYVYWWI O22576 311 10 -
ISTYVYWWI O24629 311 10 -
FSTYVQYWI O22058 384 10 -
FSTYVQYWI O24621 384 10 -
FNTYAVTRI O83707 81 10 -
FDTYASFRI RPSD_BACSU 78 10 -
FESYALFII O84064 76 10 -
LATYAARCI RP28_BACTK 101 10 -
FETYAITRI Q06384 99 10 -
FETYAITRI RPSW_STRCO 101 10 -
FETYAITRI Q59836 79 10 -
FETYAITRI Q59823 99 10 -
FETYAITRI P77959 99 10 -
LATYAARCI RPSK_BACSU 103 10 -

Motif 3 width=13
Element Seqn Id St Int Rpt
LTEREENVLRLRF RPSD_LEPIN 316 115 -
LTPREEKVLRLRF RPSD_CLOAB 317 115 -
LTAREMKVLRLRF P77870 272 115 -
LTPREAKVLRMRF O08348 559 115 -
LTPREAKVLRMRF RPSD_HAEIN 567 115 -
LTPREAKVLRMRF P77890 555 115 -
LTPREAKVLRMRF P77833 670 115 -
LTDREENVLRLRF O08332 307 115 -
LTDREENVLRLRF O66381 311 115 -
LTDREENVLRLRF RPSD_STAAU 307 115 -
LTAREAKVLRMRF O24744 552 115 -
LTAREAKVLRMRF O54540 554 115 -
LTAREAKVLRMRF O87812 554 115 -
LTAREAKVLRMRF Q59371 541 115 -
LTAREAKVLRMRF RPSD_BUCAP 555 115 -
LTAREAKVLRMRF RPSD_ECOLI 551 115 -
LTAREAKVLRMRF RPSD_PSEAE 555 115 -
LTAREAKVLRMRF RPSD_PSEFL 553 115 -
LTAREAKVLRMRF RPSD_SALTY 553 115 -
LTDREENVLRLRF RPSD_ENTFA 307 115 -
LTPREAKVLRMRF RPSD_NEIGO 575 115 -
LTDREENVLRLRF RPSD_LISMO 313 115 -
LTPREERVLRMRF P94321 657 115 -
LTPREERVLRMRF RPSD_RHOCA 612 115 -
LTPREERVLRMRF RPSD_CAUCR 590 115 -
LTPREERVLRMRF Q59753 622 115 -
LTPREERVLRMRF P95597 623 115 -
LTPREEKVLRMRF RPSD_MYXXA 646 115 -
LTPREEKVLRMRF Q59824 644 115 -
LTPREERVLRMRF RPSD_RICPR 559 116 -
LTDREENVLRLRF RPSA_BACSU 310 115 -
LTAREAKVLRMRF RPSD_PSEPU 552 115 -
LTDREENVLRLRF RPOD_STRPN 307 115 -
LTDREENVLRLRF O33662 309 115 -
LTPREERVLRMRF P77940 604 115 -
LSPREAMVLRMRY P77994 329 115 -
LSPRERDVLRLRY P74565 364 114 -
LSPRERDVLRLRY RPSD_MICAE 355 114 -
LSPRERDVLRLRY RPSD_ANASP 329 114 -
LSPRERDVLRLRY RPSD_SYNP7 323 114 -
LSARERDVLRLRY Q59965 314 114 -
LTDREENVLRMRF RPSD_LACLA 280 115 -
LTDREENVLRMRF RPSD_LACLC 280 115 -
LSERERRVLELRY P77842 335 115 -
LSTREREVIRMRF Q39515 528 115 -
LTDRERFVLIHRF Q59302 493 115 -
LTDRERFVLIHRF RPSD_CHLTR 493 115 -
LSEREAGVVRLRF Q59502 467 115 -
LSEREAGVVRLRF Q59532 513 115 -
LSEREAGVVRLRF Q59552 405 115 -
LSEREAGVVRLRF Q60158 467 115 -
LSEREAGVVRLRF Q60162 467 115 -
LPAREHEVLRMRF RPSD_TREPA 549 115 -
LNEREKAVIRMRF O32637 622 115 -
LNEREKAVIRMRF RPSD_HELPY 608 115 -
LNEREKAVIRMRF O33992 617 115 -
LNDREKAVIRMRF O52921 557 115 -
LPEREQEVVKMRF RPSD_BORBU 567 115 -
LSEREAGVVSMRF Q59913 449 115 -
LSEREAGVVSMRF Q59813 464 115 -
LSEREAGVVSMRF P77951 453 115 -
LSEREAGVVSMRF O50539 450 115 -
LSEREAGVVSMRF HRDB_STRCO 381 115 -
LGERERKVVQLRY RPSD_STRAU 256 115 -
LSEREAGVVAMRF P95644 401 115 -
LPERERKIIQLRY P77840 282 115 -
LGERERKVVQLRY HRDA_STRCO 335 115 -
LSEKEREILMYRY O67464 514 115 -
LSEREAGVVSMRY Q59814 467 115 -
LSEREAGVVKLRF Q45302 436 115 -
LTPSEERVLRMPF RPSD_AGRTU 622 115 -
LPERERKILQLRY P71106 285 115 -
LDEREQQVIRLRF Q59553 258 115 -
LTDREREVIQLRY P96035 334 114 -
LDEREHQVIRLRF P77906 284 115 -
LDEREHQVIRLRF Q59563 262 115 -
LDEREHQVIRLRF Q59531 258 115 -
LTDREKEVIALRY P96033 304 116 -
LTDKQREVVIRRF RPOS_PSEAE 271 115 -
LTEREMEVICLRY P73710 309 116 -
LTEREKDVISLRY P94906 315 115 -
LEPREQDVIRLRY Q59210 270 115 -
LNPKQKEVLARRF O51804 267 115 -
LTPREQEVIALRF RPSC_SYNY3 340 114 -
LNAKQREVLARRF O08372 282 115 -
LNAKQREVLARRF O32708 281 115 -
LNAKQREVLARRF P77860 266 115 -
LNAKQREVLARRF Q59409 278 115 -
LNAKQREVLARRF RPOS_ECOLI 278 115 -
LNAKQREVLARRF RPOS_SALDU 266 115 -
LNAKQREVLARRF RPOS_SALTY 266 115 -
LNAKQREVLARRF RPOS_YEREN 267 115 -
LTSRERDVILMRF RPSC_ANASP 352 114 -
LNAKQREVIARRF RPOS_SHIFL 278 115 -
LNAKQREVLARRF Q59904 268 115 -
LTEKQREVVIRRF O69079 272 115 -
LTEKQREVVVRRF Q59664 272 115 -
LDPRTASIIKMRY HRDD_STRCO 272 115 -
LSPRERSILRLRY P77841 249 115 -
LDDRTASIIKMRY Q59914 272 115 -
LTDKQREVVIRRF O33503 273 115 -
LTDKQREVVVRRF P77927 272 115 -
LDQRTASIIKMRY Q60012 272 115 -
LDQRTASIIKMRY Q59815 265 115 -
LNPKQKEVLARRF O32416 267 115 -
LNAKQREVLARRF RPOS_SALTI 266 115 -
LSEQEELIVRMRI RPSD_MYCGE 428 121 -
LGTREKQVIRWRF O22056 508 115 -
LGTREKQVIRWRF O22455 510 115 -
LSDKHRYVVERRF O52607 314 117 -
LSEQEELIVRMRI RPSD_MYCPN 430 121 -
LTPQQREVLILRF P73666 258 114 -
LAPRESLILSLRY HRDC_STRCO 278 115 -
LAPREADVIRSYF P71149 237 114 -
LPERERMILKMRF P77996 200 115 -
LTAQQQEVLTLRF P96034 257 113 -
LTPQQKEVLILRF RPSB_ANASP 272 114 -
LTDKERKVIELRF O67437 249 146 -
LTPQQQEVIILRF P96032 267 114 -
LTDRERHILTERR RP32_CAUCR 234 125 -
LTDRERHILTERR Q45995 234 125 -
LNDREKHILTERR RP32_ZYMMO 239 125 -
LTPQQQAVLTMRF Q55525 284 114 -
LNEKERYIIKKRY O51712 213 111 -
LNERERDILMARR O30806 237 127 -
LDPRERFIIEQRV RPSB_STIAU 231 124 -
LNDREKDILVQRR P95657 236 126 -
LDPREPFIIEQRV RPSB_MYXXA 181 123 -
LDERSRAIVTRRW O82849 252 121 -
LDPRERFIIEQRV RPSC_MYXXA 230 124 -
LDPRERFIIEKRV Q53611 228 124 -
LAARERHVFEARR P94333 243 124 -
LTPQQQAVIALRY Q55350 260 114 -
LPARDAQVIRYRF O83976 250 129 -
LNARERNIFTARW P77830 234 124 -
LNPRERRIFEARR P94330 234 124 -
LNDRERRIFEARR RP32_AGRTU 235 125 -
LNERERDIIRLYH O24348 438 120 -
LNERERDIIRLYH O48655 457 120 -
LGEREREIIRLYY O49935 419 120 -
LGEREKEIIRLYY O22057 440 120 -
LGEREKEIIRLYY O22576 440 120 -
LGEREKEIIRLYY O24629 440 120 -
LEPREKQVMVLRY O22058 509 116 -
LEPREKQVMVLRY O24621 509 116 -
LSQREQQVLILYY O83707 207 117 -
LSEKEQLVVSLFY RPSD_BACSU 202 115 -
LDEKERQVMALYY O84064 202 117 -
LDEREKEVIVKRF RP28_BACTK 175 65 -
LPEREKTVVTLYY Q06384 226 118 -
LPEREKTVVTLYY RPSW_STRCO 228 118 -
LPEREKTVVTLYY Q59836 206 118 -
LPEREKTVVTLYY Q59823 226 118 -
LPDREKTVVTLYY P77959 226 118 -
LDDREKEVIVGRF RPSK_BACSU 229 117 -

Motif 4 width=16
Element Seqn Id St Int Rpt
TLEEVGKVFGVTRERI RPSD_LEPIN 337 8 -
TLEEVGKEFNVTRERI RPSD_CLOAB 338 8 -
TLEEVGQEFGVTRERI P77870 293 8 -
TLEEVGKQFDVTRERI O08348 580 8 -
TLEEVGKQFDVTRERI RPSD_HAEIN 588 8 -
TLEEVGKQFDVTRERI P77890 576 8 -
TLEEVGKQFDVTRERI P77833 691 8 -
TLEEVGKVFGVTRERI O08332 328 8 -
TLEEVGKVFGVTRERI O66381 332 8 -
TLEEVGKVFGVTRERI RPSD_STAAU 328 8 -
TLEEVGKQFDVTRERI O24744 573 8 -
TLEEVGKQFDVTRERI O54540 575 8 -
TLEEVGKQFDVTRERI O87812 575 8 -
TLEEVGKQFDVTRERI Q59371 562 8 -
TLEEVGKQFDVTRERI RPSD_BUCAP 576 8 -
TLEEVGKQFDVTRERI RPSD_ECOLI 572 8 -
TLEEVGKQFDVTRERI RPSD_PSEAE 576 8 -
TLEEVGKQFDVTRERI RPSD_PSEFL 574 8 -
TLEEVGKQFDVTRERI RPSD_SALTY 574 8 -
TLEEVGKVFGVTRERI RPSD_ENTFA 328 8 -
TLEEVGRQFDVTRERI RPSD_NEIGO 596 8 -
TLEEVGRVFGVTRERI RPSD_LISMO 334 8 -
TLEEVGQQFSVTRERI P94321 678 8 -
TLEEVGQQFSVTRERI RPSD_RHOCA 633 8 -
TLEEVGQQFSVTRERI RPSD_CAUCR 611 8 -
TLEEVGQQFSVTRERI Q59753 643 8 -
TLEEVGQQFSVTRERI P95597 644 8 -
TLEEVGQDFEVTRERI RPSD_MYXXA 667 8 -
TLEEVGQDFEVTRERI Q59824 665 8 -
TLEEVGQQFKVTRERI RPSD_RICPR 580 8 -
TLEEVGKVFGVTRERI RPSA_BACSU 331 8 -
TLEEVGKQFDVTRERI RPSD_PSEPU 573 8 -
TLEDVGKVFNVTRERI RPOD_STRPN 328 8 -
TLEDVGKVFDVTRERI O33662 330 8 -
TLEEVGQQFSVTRERL P77940 625 8 -
TLEEVGQYFNVTRERI P77994 350 8 -
TLEEIGQIFNVTRERI P74565 385 8 -
TLEEIGQIFNVTRERI RPSD_MICAE 376 8 -
TLEEIGQIFNVTRERI RPSD_ANASP 350 8 -
TLEEIGQLFNVTRERI RPSD_SYNP7 344 8 -
TLEEIGQIFNVTRERI Q59965 335 8 -
TLEDVGKQFKVTRERI RPSD_LACLA 301 8 -
TLEDVGKQFKVTRERI RPSD_LACLC 301 8 -
TLEEVGKAFGVTRERV P77842 356 8 -
TLEEVGSRFNVTRERI Q39515 549 8 -
TLEEVGSAFNVTRERI Q59302 514 8 -
TLEEVGSAFNVTRERI RPSD_CHLTR 514 8 -
TLDEIGQVYGVTRERI Q59502 488 8 -
TLDEIGQVYGVTRERI Q59532 534 8 -
TLDEIGQVYGVTRERI Q59552 426 8 -
TLDEIGQVYGVTRERI Q60158 488 8 -
TLDEIGQVYGVTRERI Q60162 488 8 -
TLEEVGLYFDVTRERI RPSD_TREPA 570 8 -
TLEEIGKELNVTRERV O32637 644 9 -
TLEEIGKELNVTRERV RPSD_HELPY 630 9 -
TLEEIGKELNVTRERV O33992 639 9 -
TLEEIGKELNVTRERV O52921 579 9 -
TLEEVGLHFNVTRERI RPSD_BORBU 588 8 -
TLDEIGKVYGVTRERI Q59913 470 8 -
TLDEIGKVYGVTRERI Q59813 485 8 -
TLDEIGKVYGVTRERI P77951 474 8 -
TLDEIGKVYGVTRERI O50539 471 8 -
TLDEIGKVYGVTRERI HRDB_STRCO 402 8 -
TLEEIGRIFGVTRERI RPSD_STRAU 277 8 -
TLDEIGKVYGVTRERI P95644 422 8 -
TLEEVGIEFGITRERI P77840 303 8 -
TLEEIGRLGGVTRERI HRDA_STRCO 356 8 -
TLEQVGKMFNVTRERI O67464 535 8 -
TLDEIGRVYGVTRERI Q59814 488 8 -
TLDEIGQVYGVTRERI Q45302 457 8 -
TLEEVGQQFSVTRERI RPSD_AGRTU 643 8 -
TLEEVGATFGITRERT P71106 306 8 -
TLDQIGKLFGLSRERV Q59553 279 8 -
SLAEIGRMLDVSRERV P96035 355 8 -
TLDQIGKLFGLSRERV P77906 305 8 -
TLDQIGKLFGLSRERV Q59563 283 8 -
TLDQIGKLFGLSRERV Q59531 279 8 -
TLEEVGGMFNLSRERV P96033 325 8 -
TLEEVGQEIGLTRERV RPOS_PSEAE 292 8 -
TLEEVGNMFNLSRERV P73710 330 8 -
TLEEVGGMFNLSRERV P94906 336 8 -
TLDQIGRRFGLSRERV Q59210 291 8 -
TLEEVGREINLTRERV O51804 288 8 -
SLSEIGRILNLSRERV RPSC_SYNY3 361 8 -
TLEDVGREIGLTRERV O08372 303 8 -
TLEDVGREIGLTRERV O32708 302 8 -
TLEDVGREIGLTRERV P77860 287 8 -
TLEDVGREIGLTRERV Q59409 299 8 -
TLEDVGREIGLTRERV RPOS_ECOLI 299 8 -
TLEDVGREIGLTRERV RPOS_SALDU 287 8 -
TLEDVGREIGLTRERV RPOS_SALTY 287 8 -
TLEDVGREIGLTRERV RPOS_YEREN 288 8 -
SLAEIGRALDLSRERV RPSC_ANASP 373 8 -
TLEDVGREIGLTRERV RPOS_SHIFL 299 8 -
TLEDVGREIVLTRERV Q59904 289 8 -
TLEDVGLEIGLTRERV O69079 293 8 -
TLEDVGLEIGLTRERV Q59664 293 8 -
TLTEVGKEHGLTRERI HRDD_STRCO 293 8 -
TLEQIGQRLRLTRERV P77841 270 8 -
TLTEVGKQHGLTRERI Q59914 293 8 -
TLEDVGLEIGLTRERV O33503 294 8 -
TLEDVGLEIGLTRERV P77927 293 8 -
TLTEVGKEHGLTRERI Q60012 293 8 -
TLTEVGKQHGLTRERI Q59815 286 8 -
TLEEVGREINLTRERV O32416 288 8 -
TLEDVGREIGLTRERV RPOS_SALTI 287 8 -
TLDEVGQKILIPREKI RPSD_MYCGE 450 9 -
TLQEIGEMMGVSRERV O22056 529 8 -
TLQEIGEMMGVSRERV O22455 531 8 -
TLEELAAEMGLTRERV O52607 335 8 -
TLDEVSQKIKIPREKI RPSD_MYCPN 452 9 -
TLASIGSMLSISRERV P73666 279 8 -
TLQQVAQHVGLTRERV HRDC_STRCO 299 8 -
TLEEIGEKFKLTRERV P71149 258 8 -
TLTEIGNIFGLTRERI P77996 220 7 -
TLAKIGEHLNISRERV P96034 278 8 -
TLVQISQRMGISRERV RPSB_ANASP 293 8 -
TLREIGEILGLSRERV O67437 270 8 -
SLAKIGKRMNLSRERV P96032 288 8 -
TLEELAAQYGVSRERV RP32_CAUCR 253 6 -
TLEELAAQYGVSRERV Q45995 253 6 -
TLEELSQVYGVSRERV RP32_ZYMMO 258 6 -
SLAKIGQHLNISRERV Q55525 305 8 -
TLKDISTELGISSETV O51712 235 9 -
TLEELSSQYDVSRERI O30806 256 6 -
TLKELGEHFGFSRERA RPSB_STIAU 250 6 -
TLEELSEGYGVSRERI P95657 255 6 -
TLKELGEHFGFSRERA RPSB_MYXXA 200 6 -
TLHELAAEYGISAERV O82849 271 6 -
TLSELGEHFGFSRERA RPSC_MYXXA 249 6 -
TLSELGEHFGFSRERA Q53611 247 6 -
TLDQLARELSISSERV P94333 262 6 -
SLAKVGERLNISRERV Q55350 281 8 -
SLQEIGEIFQITKERV O83976 271 8 -
TLEELAAEYGVSRERV P77830 253 6 -
TLEDLAAEFGVSRERV P94330 253 6 -
TLEELSSEFDISRERV RP32_AGRTU 254 6 -
TWEDISRQFGLSRERV O24348 458 7 -
TWEDISRQFGLSRERV O48655 477 7 -
TWEDISQRIGLSRERV O49935 439 7 -
TWEDISKRIGLSRERV O22057 460 7 -
TWEDISKRIGLSRERV O22576 460 7 -
TWEDISKRIGLSRERV O24629 460 7 -
SLEEIGKLFKVSKEWI O22058 530 8 -
SLEEIGKLLKVSKEWI O24621 530 8 -
TLKEIGKVLKVTESRI O83707 224 4 -
TLTEIGQVLNLSTSRI RPSD_BACSU 219 4 -
VLKEIGKILGVSESRV O84064 219 4 -
TQREIAKALGISRSYV RP28_BACTK 196 8 -
TLAEIGQVLGVTESRV Q06384 243 4 -
TLAEIGNVLGVTESRV RPSW_STRCO 245 4 -
TLAEIGNVLGVTESRV Q59836 223 4 -
TLAEIGNVLGVTESRV Q59823 243 4 -
TLAEIGNVLGVTESRV P77959 243 4 -
TQREIAKELGISRSYV RPSK_BACSU 250 8 -

Motif 5 width=12
Element Seqn Id St Int Rpt
IRQIEAKALRKL RPSD_LEPIN 352 -1 -
IRQIEAKALRKL RPSD_CLOAB 353 -1 -
IRQIEAKALRKL P77870 308 -1 -
IRQIEAKALRKL O08348 595 -1 -
IRQIEAKALRKL RPSD_HAEIN 603 -1 -
IRQIEAKALRKL P77890 591 -1 -
IRQIEAKALRKL P77833 706 -1 -
IRQIEAKALRKL O08332 343 -1 -
IRQIEAKALRKL O66381 347 -1 -
IRQIEAKALRKL RPSD_STAAU 343 -1 -
IRQIEAKALRKL O24744 588 -1 -
IRQIEAKALRKL O54540 590 -1 -
IRQIEAKALRKL O87812 590 -1 -
IRQIEAKALRKL Q59371 577 -1 -
IRQIEAKALRKL RPSD_BUCAP 591 -1 -
IRQIEAKALRKL RPSD_ECOLI 587 -1 -
IRQIEAKALRKL RPSD_PSEAE 591 -1 -
IRQIEAKALRKL RPSD_PSEFL 589 -1 -
IRQIEAKALRKL RPSD_SALTY 589 -1 -
IRQIEAKALRKL RPSD_ENTFA 343 -1 -
IRQIEAKALRKL RPSD_NEIGO 611 -1 -
IRQIEAKALRKL RPSD_LISMO 349 -1 -
IRQIEAKALRKL P94321 693 -1 -
IRQIEAKALRKL RPSD_RHOCA 648 -1 -
IRQIEAKALRKL RPSD_CAUCR 626 -1 -
IRQIEAKALRKL Q59753 658 -1 -
IRQIEAKALRKL P95597 659 -1 -
IRQIEAKALRKL RPSD_MYXXA 682 -1 -
IRQIEAKALRKL Q59824 680 -1 -
IRQIESKALRKL RPSD_RICPR 595 -1 -
IRQIEAKALRKL RPSA_BACSU 346 -1 -
IRQIEAKAWRKL RPSD_PSEPU 588 -1 -
IRQIEAKALRKL RPOD_STRPN 343 -1 -
IRQIEAKALRKL O33662 345 -1 -
LRQIEAKALRKL P77940 640 -1 -
IRQIEVKALRKL P77994 365 -1 -
IRQIEAKALRKL P74565 400 -1 -
IRQIEAKALRKL RPSD_MICAE 391 -1 -
IRQIEAKALRKL RPSD_ANASP 365 -1 -
IRQIEAKALRKL RPSD_SYNP7 359 -1 -
IRQIEAKALRKL Q59965 350 -1 -
IRQIEAKAIKKL RPSD_LACLA 316 -1 -
IRQIEAKAIKKL RPSD_LACLC 316 -1 -
VRQIEVKALRKL P77842 371 -1 -
IRQIESKALKKL Q39515 564 -1 -
IRQIEAKALRKM Q59302 529 -1 -
IRQIEAKALRKM RPSD_CHLTR 529 -1 -
IRQIESKTMSKL Q59502 503 -1 -
IRQIESKTMSKL Q59532 549 -1 -
IRQIESKTMSKL Q59552 441 -1 -
IRQIESKTMSKL Q60158 503 -1 -
IRQIESKTMSKL Q60162 503 -1 -
IRQIEAKALKRL RPSD_TREPA 585 -1 -
VRQIESSAIKKL O32637 659 -1 -
VRQIESSAIKKL RPSD_HELPY 645 -1 -
VRQIESSAIKKL O33992 654 -1 -
VRQIESSAIKKL O52921 594 -1 -
IRQIESKALRRL RPSD_BORBU 603 -1 -
IRQIESKTMSKL Q59913 485 -1 -
IRQIESKTMSKL Q59813 500 -1 -
IRQIESKTMSKL P77951 489 -1 -
IRQIESKTMSKL O50539 486 -1 -
IRQIESKTMSKL HRDB_STRCO 417 -1 -
IRQIESKTLNKL RPSD_STRAU 292 -1 -
IRQIESKTMSKL P95644 437 -1 -
IRQIEAVALRKL P77840 318 -1 -
IRQIESKTLSKL HRDA_STRCO 371 -1 -
IRQIENKALRKL O67464 550 -1 -
IRQIESKTMSKL Q59814 503 -1 -
IRQIESKTMSKR Q45302 472 -1 -
IRQIEAKALRNV RPSD_AGRTU 658 -1 -
TRQIEAEALRRL P71106 321 -1 -
VRQIEREVMAKL Q59553 294 -1 -
VRQIEAKALQKL P96035 370 -1 -
VRQIERDVMSKL P77906 320 -1 -
VRQIERDVMSKL Q59563 298 -1 -
VRQIERDVMCKL Q59531 294 -1 -
VRQIQSKAMRKL P96033 340 -1 -
VRQIQVEALKRL RPOS_PSEAE 307 -1 -
VRQIQSKAMRKL P73710 345 -1 -
VRQIQTKAMRKL P94906 351 -1 -
VRQIEREVMSKL Q59210 306 -1 -
VRQIQVEGLRRL O51804 303 -1 -
VRQIEAKALQKL RPSC_SYNY3 376 -1 -
VRQIQVEGLRRL O08372 318 -1 -
VRQIQVEGLRRL O32708 317 -1 -
VRQIQVEGLRRL P77860 302 -1 -
VRQIQVEGLRRL Q59409 314 -1 -
VRQIQVEGLRRL RPOS_ECOLI 314 -1 -
VRQIQVEGLRRL RPOS_SALDU 302 -1 -
VRQIQVEGLRRL RPOS_SALTY 302 -1 -
VRQIQVEGLRRL RPOS_YEREN 303 -1 -
VRQIESKALQKL RPSC_ANASP 388 -1 -
VRQIQVQGLRRL RPOS_SHIFL 314 -1 -
VRQIQVEGLRRL Q59904 304 -1 -
VRQIQVEGLKRL O69079 308 -1 -
VRQIQVEGLKRL Q59664 308 -1 -
IRQIEKHALLEL HRDD_STRCO 308 -1 -
VRQLEHEALRKL P77841 285 -1 -
IRQIEKHALLEL Q59914 308 -1 -
VRQIQVEGLKRL O33503 309 -1 -
VRQIQVEGLKRL P77927 308 -1 -
IRQIEKHALLEL Q60012 308 -1 -
IRQIEKHALLEL Q59815 301 -1 -
VRQIQVEGLRRL O32416 303 -1 -
VRQIQVEGLRPS RPOS_SALTI 302 -1 -
IRQIENKAIRKL RPSD_MYCGE 465 -1 -
VRQIESSAFRKL O22056 544 -1 -
VRQIESSAFRKL O22455 546 -1 -
VRQIQQEALVKL O52607 350 -1 -
IRQIETKAIRKL RPSD_MYCPN 467 -1 -
VRQIEREALNKL P73666 294 -1 -
VRQLEKESLAHL HRDC_STRCO 314 -1 -
VRQIKEKAIRRL P71149 273 -1 -
IRQIQNNTIKEL P77996 235 -1 -
VRQIEHGSLAKL P96034 293 -1 -
VRQVEKQALTLL RPSB_ANASP 308 -1 -
VRQLETRALRKL O67437 285 -1 -
VRQLERQALNHL P96032 303 -1 -
VRQIEVRAFEKL RP32_CAUCR 268 -1 -
VRQIEVRAFEKL Q45995 268 -1 -
VRQIEVRAFDKL RP32_ZYMMO 273 -1 -
VRQLENQALAQL Q55525 320 -1 -
VRQIEKRVLKKL O51712 250 -1 -
IRQIEVRAFEKL O30806 271 -1 -
ARQLEIRAKDKL RPSB_STIAU 265 -1 -
IRQIEVRAFEKL P95657 270 -1 -
ARQLEIRAKDKL RPSB_MYXXA 215 -1 -
VRQIEAAALKKL O82849 286 -1 -
ARQLEIRAKDKL RPSC_MYXXA 264 -1 -
ARQLEIRAKDKL Q53611 262 -1 -
VRQIEIRAFAKV P94333 277 -1 -
VRKLERQAMDHL Q55350 296 -1 -
VRQIEKKALLRI O83976 286 -1 -
VRQIEERAFQKV P77830 268 -1 -
VRQIEVRAFEKV P94330 268 -1 -
VRQIEVRAFEKV RP32_AGRTU 269 -1 -
VRQVGLVAMEKL O24348 473 -1 -
VRQVGLIAMEKL O48655 492 -1 -
VRQVGLVALEKL O49935 454 -1 -
VRQVGLVALEKL O22057 475 -1 -
VRQVGLVALEKL O22576 475 -1 -
VRQVGLVALEKL O24629 475 -1 -
IRKIERRAMAKL O22058 545 -1 -
IRKIERRAMAKL O24621 545 -1 -
ISQIHTSANLKL O83707 239 -1 -
ISQIHSKALFKL RPSD_BACSU 234 -1 -
VSQIHSKALLKL O84064 234 -1 -
VSRIEKRALMKM RP28_BACTK 211 -1 -
VSQIHTKSVLQL Q06384 258 -1 -
VSQIHTKSVLQL RPSW_STRCO 260 -1 -
VSQIHTKSVLQL Q59836 238 -1 -
VSQIHTKSVLQL Q59823 258 -1 -
VSQIHTKSVLQL P77959 258 -1 -
VSRIEKRALMKM RPSK_BACSU 265 -1 -