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PR00032

Identifier
HTHARAC  [View Relations]  [View Alignment]  
Accession
PR00032
No. of Motifs
2
Creation Date
16-SEP-1993  (UPDATE 17-JUN-1999)
Title
AraC bacterial regulatory protein signature
Database References

PROSITE; PS00041 HTH_ARAC_FAMILY_1; PS01124 HTH_ARAC_FAMILY_2
PFAM; PF00165 HTH_2
INTERPRO; IPR000005
Literature References
1. PARKER, L.L. AND HALL, B.G.
Characterisation and nucleotide sequence of the cryptic cel operon of
Escherichia coli K12.
GENETICS 124(3) 455-471 (1990).
 
2. FRANK, D.W. AND IGLEWSKI, B.H.
Cloning and sequence analysis of a transregulatory locus required for
exoenzyme-s synthesis in Pseudomonas aeruginosa.
J.BACTERIOL. 173(20) 6460-6468 (1991).
 
3. STEELE, M.I., LORENZ, D., HATTER, K., PARKS, A. AND SOKATCH, J.R.
Characterisation of the MMSAB operon of Pseudomonas aeruginosa PAO
encoding methylmalonate-semialdehyde dehydrogenase and 3-hydroxyisobutyrate
dehydrogenase.
J.BIOL.CHEM. 267(19) 13585-13592 (1992).
 
4. WU, J. AND WEISS, B.
Two divergently transcribed genes, soxR and soxS, control a superoxide
response regulon of Escherichia coli.
J.BACTERIOL. 173(9) 2864-2871 (1991).

Documentation
Numerous bacterial transcription regulatory proteins bind DNA via a 
helix-turn-helix (HTH) motif. These proteins are very diverse, but for
convenience may be grouped into subfamilies on the basis of sequence
similarity. One such family groups together a range of proteins, including
aadA, appY, aracC, celD, envY, exsA, fapR, melR, mmsR, rhaR, rhaS, rns,
soxS, tetD, virF and xylS [1-4]. Although the sequences belonging to this
family differ somewhat in length, in each case the HTH motif is situated 
towards the C-terminus.
 
HTHARAC is a 2-element fingerprint that provides a signature for the araC 
bacterial regulatory proteins. The fingerprint was derived from an initial
alignment of 7 sequences: the motifs completely encompass the region
encoded by PROSITE pattern HTH_ARAC_FAMILY (PS00041), which includes a
conserved region 30 residues after the DNA-binding domain. Four iterations
on OWL21.1 were required to reach convergence, at which point a true set
comprising 42 sequences was identified.
 
An update on SPTR37_9f identified a true set of 119 sequences.
Summary Information
119 codes involving  2 elements
Composite Feature Index
2119119
12
True Positives
AARP_PROST    ADAA_BACSU    ADIY_ECOLI    AGGR_ECOLI    
APPY_ECOLI ARAC_CITFR ARAC_ECOLI ARAC_ERWCH
ARAC_SALTY ARAL_STRAT ARAL_STRLI CAFR_YERPE
CELD_ECOLI CFAD_ECOLI CSVR_ECOLI ENVY_ECOLI
EXSA_PSEAE FAPR_ECOLI FEAR_ECOLI INVF_SALTY
LACR_STAXY LCRF_YERPE LUMQ_PHOLE MARA_ECOLI
MARA_SALTY MELR_ECOLI MMSR_PSEAE MSMR_STRMU
O05142 O05934 O30502 O30507
O31249 O31456 O31517 O32071
O32788 O34901 O51847 O52066
O52494 O52770 O52834 O52846
O53299 O68474 O68498 O68525
O69819 O85815 O86700 O87004
O87252 O87389 O87613 O88020
P72171 P72312 P72595 P72600
P72608 P73364 P76135 P76877
P96245 P96427 P96660 P96662
PERA_ECOLI POCR_SALTY PQRA_PROVU Q07681
Q46985 Q47074 Q51543 Q51995
Q52799 Q54308 Q56951 RAFR_PEDPE
RAMA_ENTCL RAMA_KLEPN RHAR_ECOLI RHAS_ECOLI
RHAS_SALTY RNS_ECOLI ROB_ECOLI SOXS_ECOLI
SOXS_SALTY TCPN_VIBCH TETD_ECOLI THCR_RHOSO
URER_ECOLI URER_PROMI V38K_MYCTU VIRF_SHIDY
VIRF_YEREN XYLR_ECOLI XYLR_HAEIN XYLS_PSEPU
XYS1_PSEPU XYS2_PSEPU XYS3_PSEPU XYS4_PSEPU
Y4FK_RHISN YA52_HAEIN YBBB_BACSU YBCM_ECOLI
YDIP_ECOLI YEAM_ECOLI YHIW_ECOLI YHIX_ECOLI
YIJO_ECOLI YISR_BACSU YKGA_ECOLI YKGD_ECOLI
YPDC_ECOLI YQHC_ECOLI YR12_MYCTU
Sequence Titles
AARP_PROST  TRANSCRIPTIONAL ACTIVATOR AARP - PROVIDENCIA STUARTII. 
ADAA_BACSU METHYLPHOSPHOTRIESTER-DNA ALKYLTRANSFERASE - BACILLUS SUBTILIS.
ADIY_ECOLI PUTATIVE REGULATORY PROTEIN ADIY - ESCHERICHIA COLI.
AGGR_ECOLI TRANSCRIPTIONAL ACTIVATOR AGGR (AAF/I REGULATORY PROTEIN) - ESCHERICHIA COLI.
APPY_ECOLI APPY PROTEIN (M5 POLYPEPTIDE) - ESCHERICHIA COLI.
ARAC_CITFR ARABINOSE OPERON REGULATORY PROTEIN - CITROBACTER FREUNDII.
ARAC_ECOLI ARABINOSE OPERON REGULATORY PROTEIN - ESCHERICHIA COLI.
ARAC_ERWCH ARABINOSE OPERON REGULATORY PROTEIN - ERWINIA CHRYSANTHEMI.
ARAC_SALTY ARABINOSE OPERON REGULATORY PROTEIN - SALMONELLA TYPHIMURIUM.
ARAL_STRAT PUTATIVE ARAC-LIKE TRANSCRIPTION REGULATOR - STREPTOMYCES ANTIBIOTICUS.
ARAL_STRLI PUTATIVE ARAC-LIKE TRANSCRIPTION REGULATOR - STREPTOMYCES LIVIDANS.
CAFR_YERPE F1 OPERON POSITIVE REGULATORY PROTEIN - YERSINIA PESTIS.
CELD_ECOLI CEL OPERON REPRESSOR - ESCHERICHIA COLI.
CFAD_ECOLI CFA/I FIMBRIAL SUBUNIT D (COLONIZATION FACTOR ANTIGEN I SUBUNIT D) - ESCHERICHIA COLI.
CSVR_ECOLI TRANSCRIPTIONAL ACTIVATOR CSVR - ESCHERICHIA COLI.
ENVY_ECOLI PORIN THERMOREGULATORY PROTEIN ENVY - ESCHERICHIA COLI.
EXSA_PSEAE EXOENZYME S SYNTHESIS REGULATORY PROTEIN EXSA - PSEUDOMONAS AERUGINOSA.
FAPR_ECOLI 987P FIMBRIAL OPERON POSITIVE REGULATORY PROTEIN FAPR - ESCHERICHIA COLI.
FEAR_ECOLI TRANSCRIPTIONAL ACTIVATOR FEAR - ESCHERICHIA COLI.
INVF_SALTY INVASION PROTEIN INVF - SALMONELLA TYPHIMURIUM.
LACR_STAXY LACTOSE OPERON TRANSCRIPTION ACTIVATOR - STAPHYLOCOCCUS XYLOSUS.
LCRF_YERPE THERMOREGULATORY PROTEIN LCRF - YERSINIA PESTIS.
LUMQ_PHOLE PROBABLE TRANSCRIPTIONAL REGULATOR LUMQ - PHOTOBACTERIUM LEIOGNATHI.
MARA_ECOLI MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN MARA - ESCHERICHIA COLI.
MARA_SALTY MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN MARA - SALMONELLA TYPHIMURIUM.
MELR_ECOLI MELIBIOSE OPERON REGULATORY PROTEIN - ESCHERICHIA COLI.
MMSR_PSEAE MMSAB OPERON REGULATORY PROTEIN - PSEUDOMONAS AERUGINOSA.
MSMR_STRMU MSM OPERON REGULATORY PROTEIN - STREPTOCOCCUS MUTANS.
O05142 OPERON REGULATORY PROTEIN - PSEUDOMONAS SP.
O05934 PUTATIVE REGULATORY PROTEIN - PSEUDOMONAS PUTIDA.
O30502 TRANSCRIPTION REGULATOR - BACILLUS SUBTILIS.
O30507 ARGININE REGULATORY PROTEIN - PSEUDOMONAS AERUGINOSA.
O31249 TRANSCRIPTIONAL REGULATOR OF XYLS /ARAC FAMILY - ACINETOBACTER SP. ADP1.
O31456 YBFP PROTEIN - BACILLUS SUBTILIS.
O31517 YESN PROTEIN - BACILLUS SUBTILIS.
O32071 YTDP PROTEIN - BACILLUS SUBTILIS.
O32788 HYPOTHETICAL 32.5 KD PROTEIN - LACTOCOCCUS LACTIS.
O34901 TRANSCRIPTION REGULATOR - BACILLUS SUBTILIS.
O51847 REGULATORY PROTEIN - PSEUDOMONAS PUTIDA.
O52066 ALCR - BORDETELLA PERTUSSIS.
O52494 XYLS/ARAC FAMILY TRANSCRIPTIONAL REGULATORY PROTEIN HOMOLOG - LISTERIA MONOCYTOGENES.
O52770 ACTIVATOR PROTEIN - PSEUDOMONAS FLUORESCENS.
O52834 ALCR - BORDETELLA BRONCHISEPTICA.
O52846 HYPOTHETICAL 32.7 KD PROTEIN - BACILLUS MEGATERIUM.
O53299 HYPOTHETICAL 37.8 KD PROTEIN - MYCOBACTERIUM TUBERCULOSIS.
O68474 TRANSCRIPTIONAL REGULATOR - RHIZOBIUM SP. (STRAIN BR816).
O68498 ADAPTIVE RESPONSE REGULATORY PROTEIN - PSEUDOALTEROMONAS SP. S9.
O68525 REGULATORY PROTEIN - RHIZOBIUM LOTI.
O69819 TRANSCRIPTIONAL REGULATOR - STREPTOMYCES COELICOLOR.
O85815 PUTATIVE REGULATORY PROTEIN - PSEUDOMONAS SP.
O86700 PUTATIVE TRANSCRIPTIONAL REGULATOR - STREPTOMYCES COELICOLOR.
O87004 CHPD - PSEUDOMONAS AERUGINOSA.
O87252 POSITIVE TRANSCRIPTIONAL ACTIVATOR - LACTOCOCCUS LACTIS.
O87389 ARAC-LIKE TRANSCRIPTION REGULATOR - SINORHIZOBIUM MELILOTI.
O87613 HYPOTHETICAL 44.0 KD PROTEIN - PSEUDOMONAS AERUGINOSA.
O88020 PUTATIVE TRANSCRIPTIONAL REGULATOR - STREPTOMYCES COELICOLOR.
P72171 ORUR - PSEUDOMONAS AERUGINOSA.
P72312 NITRILASE REGULATOR - RHODOCOCCUS RHODOCHROUS.
P72595 REGULATORY PROTEIN PCHR - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
P72600 REGULATORY PROTEIN PCRR - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
P72608 REGULATORY PROTEIN PCHR - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
P73364 LUMQ - SYNECHOCYSTIS SP. (STRAIN PCC 6803).
P76135 HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN PQQL-HIPA INTERGENIC REGION - ESCHERICHIA COLI.
P76877 HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN PQQL-HIPA INTERGENIC REGION - ESCHERICHIA COLI.
P96245 HYPOTHETICAL 29.5 KD PROTEIN - MYCOBACTERIUM TUBERCULOSIS.
P96427 ARAC-TYPE REGULATORY PROTEIN - RHODOCOCCUS FASCIANS.
P96660 PROBABLE HTH_ARAC_FAMILY OF TRANSCRIPTIONAL REGULATOR - BACILLUS SUBTILIS.
P96662 PROBABLE HTH_ARAC_FAMILY OF TRANSCRIPTIONAL REGULATOR - BACILLUS SUBTILIS.
PERA_ECOLI TRANSCRIPTIONAL ACTIVATOR PERA - ESCHERICHIA COLI.
POCR_SALTY REGULATORY PROTEIN POCR - SALMONELLA TYPHIMURIUM.
PQRA_PROVU REGULATORY PROTEIN PQRA - PROTEUS VULGARIS.
Q07681 TRANSCRIPTIONAL ACTIVATOR AFRR - ESCHERICHIA COLI.
Q46985 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE OPERON REGULATORY PROTEIN - ESCHERICHIA COLI.
Q47074 BFPT - ESCHERICHIA COLI.
Q51543 POBR AND POBA GENES - PSEUDOMONAS AERUGINOSA.
Q51995 TMBS - PSEUDOMONAS PUTIDA.
Q52799 POBR - RHIZOBIUM LEGUMINOSARUM.
Q54308 HELIX-TURN-HELIX DNA BINDING PROTEIN - STREPTOMYCES HYGROSCOPICUS.
Q56951 YBTA - YERSINIA PESTIS.
RAFR_PEDPE RAFFINOSE OPERON TRANSCRIPTIONAL REGULATORY PROTEIN RAFR - PEDIOCOCCUS PENTOSACEUS.
RAMA_ENTCL TRANSCRIPTIONAL ACTIVATOR RAMA - ENTEROBACTER CLOACAE.
RAMA_KLEPN TRANSCRIPTIONAL ACTIVATOR RAMA - KLEBSIELLA PNEUMONIAE.
RHAR_ECOLI L-RHAMNOSE OPERON TRANSCRIPTIONAL ACTIVATOR RHAR - ESCHERICHIA COLI.
RHAS_ECOLI L-RHAMNOSE OPERON REGULATORY PROTEIN RHAS - ESCHERICHIA COLI.
RHAS_SALTY L-RHAMNOSE OPERON REGULATORY PROTEIN RHAS - SALMONELLA TYPHIMURIUM.
RNS_ECOLI REGULATORY PROTEIN RNS - ESCHERICHIA COLI.
ROB_ECOLI RIGHT ORIGIN-BINDING PROTEIN - ESCHERICHIA COLI.
SOXS_ECOLI REGULATORY PROTEIN SOXS - ESCHERICHIA COLI.
SOXS_SALTY REGULATORY PROTEIN SOXS - SALMONELLA TYPHIMURIUM.
TCPN_VIBCH TCP PILUS VIRULENCE REGULATORY PROTEIN - VIBRIO CHOLERAE.
TETD_ECOLI TRANSPOSON TN10 TETD PROTEIN (ORFR) - ESCHERICHIA COLI.
THCR_RHOSO PROBABLE THC OPERON REGULATORY PROTEIN - RHODOCOCCUS SP. (STRAIN NI86/21).
URER_ECOLI UREASE OPERON TRANSCRIPTIONAL ACTIVATOR - ESCHERICHIA COLI.
URER_PROMI UREASE OPERON TRANSCRIPTIONAL ACTIVATOR - PROTEUS MIRABILIS.
V38K_MYCTU POSSIBLE VIRULENCE-REGULATING 38 KD PROTEIN - MYCOBACTERIUM TUBERCULOSIS.
VIRF_SHIDY VIRULENCE REGULON TRANSCRIPTIONAL ACTIVATOR VIRF - SHIGELLA DYSENTERIAE, SHIGELLA FLEXNERI, AND SHIGELLA SONNEI.
VIRF_YEREN VIRULENCE REGULON TRANSCRIPTIONAL ACTIVATOR - YERSINIA ENTEROCOLITICA.
XYLR_ECOLI XYLOSE OPERON REGULATORY PROTEIN - ESCHERICHIA COLI.
XYLR_HAEIN XYLOSE OPERON REGULATORY PROTEIN - HAEMOPHILUS INFLUENZAE.
XYLS_PSEPU XYLDLEGF OPERON TRANSCRIPTIONAL ACTIVATOR - PSEUDOMONAS PUTIDA.
XYS1_PSEPU XYLDLEGF OPERON TRANSCRIPTIONAL ACTIVATOR 1 - PSEUDOMONAS PUTIDA.
XYS2_PSEPU XYLDLEGF OPERON TRANSCRIPTIONAL ACTIVATOR 2 - PSEUDOMONAS PUTIDA.
XYS3_PSEPU XYLDLEGF OPERON TRANSCRIPTIONAL ACTIVATOR 3 - PSEUDOMONAS PUTIDA.
XYS4_PSEPU XYLDLEGF OPERON TRANSCRIPTIONAL ACTIVATOR 1 - PSEUDOMONAS PUTIDA.
Y4FK_RHISN PUTATIVE TRANSCRIPTIONAL REGULATOR Y4FK - RHIZOBIUM SP. (STRAIN NGR234).
YA52_HAEIN HYPOTHETICAL TRANSCRIPTIONAL REGULATOR HI1052 - HAEMOPHILUS INFLUENZAE.
YBBB_BACSU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN FEUA-SIGW INTERGENIC REGION (ORF3) - BACILLUS SUBTILIS.
YBCM_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN EMRE-RUS INTERGENIC REGION - ESCHERICHIA COLI.
YDIP_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN AROD-PPS INTERGENIC REGION - ESCHERICHIA COLI.
YEAM_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN GAPA-RND INTERGENIC REGION - ESCHERICHIA COLI.
YHIW_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN HDED-GADA INTERGENIC REGION - ESCHERICHIA COLI.
YHIX_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN HDED-GADA INTERGENIC REGION - ESCHERICHIA COLI.
YIJO_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN GLDA-PPC INTERGENIC REGION - ESCHERICHIA COLI.
YISR_BACSU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN WPRA-DEGA INTERGENIC REGION - BACILLUS SUBTILIS.
YKGA_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN EAEH-BETA INTERGENIC REGION - ESCHERICHIA COLI.
YKGD_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN EAEH-BETA INTERGENIC REGION - ESCHERICHIA COLI.
YPDC_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN DDG-GLK INTERGENIC REGION - ESCHERICHIA COLI.
YQHC_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN METC-SUFI INTERGENIC REGION - ESCHERICHIA COLI.
YR12_MYCTU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR CY21B4.12 - MYCOBACTERIUM TUBERCULOSIS.
Scan History
OWL21_1    4  100  NSINGLE    
OWL25_2 1 125 NSINGLE
SPTR37_9f 9 200 NSINGLE
Initial Motifs
Motif 1  width=16
Element Seqn Id St Int Rpt
VTDIAFEAGYSSPSLF CELD_ECOLI 240 240 -
IGMIASLVGYTSVSYF FAPR_ECOLI 217 217 -
IATVGRNVGFDDQLYF ARAC_SALTY 245 245 -
IATVGRNVGFDDQLYF ARAC_ECOLI 245 245 -
VTDIAYRCGFSDSNHF RHAS_ECOLI 238 238 -
VTEIAYRCGFGDSNHF RHAS_SALTY 237 237 -
IGDIAICVGIANAPYF ADAA_BACSU 166 166 -

Motif 2 width=17
Element Seqn Id St Int Rpt
FIKTFKKLTSFTPKSYR CELD_ECOLI 255 -1 -
FIKTFKEYYGVTPKKFE FAPR_ECOLI 232 -1 -
FSRVFKKCTGASPSEFR ARAC_SALTY 260 -1 -
FSRVFKKCTGASPSEFR ARAC_ECOLI 260 -1 -
FSTLFRREFNWSPRDIR RHAS_ECOLI 253 -1 -
FSTLFRREFNWSPRDIR RHAS_SALTY 252 -1 -
FITLFKKKTGQTPARFR ADAA_BACSU 181 -1 -
Final Motifs
Motif 1  width=16
Element Seqn Id St Int Rpt
IFDIAMDLGYVSQQTF SOXS_ECOLI 72 72 -
IFDIAMDLGYVSQQTF SOXS_SALTY 72 72 -
IVDIAMEAGFSSQSYF LCRF_YERPE 232 232 -
IVDIAMEAGFSSQSYF VIRF_YEREN 232 232 -
IVDIAMEAGFSSQSYF EXSA_PSEAE 256 256 -
ILDIALMYGFSSQATF PQRA_PROVU 74 74 -
VNEIADRLGFSEPAYF Q51543 254 254 -
IAEISNSVGFSDSLAF MSMR_STRMU 241 241 -
LYEIALLLGFNDSSNF P72171 305 305 -
VVVIAESVGYASESSF YKGD_ECOLI 245 245 -
ISQISNMIGFSSTSYF AGGR_ECOLI 228 228 -
INVVAQKCGYNSTSYF APPY_ECOLI 203 203 -
ITQVAQLCGYSSTSYF ENVY_ECOLI 213 213 -
ILDIALTAGFRSSSRF MELR_ECOLI 259 259 -
VFQISHRCGFGSNAYF URER_PROMI 235 235 -
VTDIAFEAGYSSPSLF CELD_ECOLI 240 240 -
IHEVAQRCGFPDSDYF YPDC_ECOLI 249 249 -
IQQIANKVGYSSETAF O31249 272 272 -
MLDIALSLHFDSQQSF YKGA_ECOLI 84 84 -
VLRVAMDSGFGSLSAF O68525 252 252 -
IANIGRVVGYDDQLYF ARAC_ERWCH 251 251 -
IGMIASLVGYTSVSYF FAPR_ECOLI 217 217 -
IPEIAYATGFSSPAHF O87389 288 288 -
IIDVAIKYGYVSSDTF O32788 73 73 -
VQSIANMVGYKDSFTF RAFR_PEDPE 241 241 -
LAGIGFHWGFSDQSHF FEAR_ECOLI 266 266 -
ILEIALKYQFDSQQSF TETD_ECOLI 96 96 -
IATVGRNVGFDDQLYF ARAC_SALTY 245 245 -
IATVGRNVGFDDQLYF ARAC_ECOLI 245 245 -
IATVGRNVGFDDQLYF ARAC_CITFR 246 246 -
LSQVAQLCGFSSQSSF LUMQ_PHOLE 213 213 -
VNNIAWQLGFKDPAYF Q46985 257 257 -
VTEVAELAGFSSVKTF O52494 254 254 -
IASIARNLGFSQTSYF POCR_SALTY 260 260 -
ILDIALQYRFDSQQTF ROB_ECOLI 73 73 -
VNKIAEQCGYASTSYF P76877 129 129 -
VNKIAEQCGYASTSYF P76135 200 200 -
LHTIAEKCGYSSTSYF YHIW_ECOLI 203 203 -
VIDIALKYQFDSQQSF AARP_PROST 87 87 -
ISDISTECGFEDSNYF RHAR_ECOLI 274 274 -
VLAIALEVGYQSEAHF YA52_HAEIN 262 262 -
IKRVAVSCGYHSVSYF YHIX_ECOLI 209 209 -
INEISQMCGYPSLQYF XYLR_ECOLI 353 353 -
ISQISNMIGISSASYF CFAD_ECOLI 228 228 -
IIEISAKLFYDSQQTF CAFR_YERPE 74 74 -
IDEISCLVGFNSTSYF PERA_ECOLI 232 232 -
IDEISCLVGFNSTSYF Q47074 232 232 -
IKQIAYQSGFASVSNF TCPN_VIBCH 236 236 -
VTDIAMRYGFSHLGRF O05142 286 286 -
VTDIAYRCGFSDSNHF RHAS_ECOLI 238 238 -
VFQISHRCGFGSNAYF URER_ECOLI 235 235 -
VAEVANNVGYSHLGHF P72595 292 292 -
VKEVAHACGFVDSNYF YIJO_ECOLI 237 237 -
ASAAAMRVGYESASQF YQHC_ECOLI 335 335 -
VIDIAIKYGYNSPDSF P96662 73 73 -
ISQISNMIGISSASYF RNS_ECOLI 228 228 -
VQEIGFRLGFADPAYF Q52799 255 255 -
VQDIARQVGYEHPSYF O52846 239 239 -
VEVVADAVGYRSASAF O69819 223 223 -
VSEIAEEIGFGDNPKY O31517 327 327 -
VTEIAYRCGFGDSNHF RHAS_SALTY 237 237 -
VYDICLKYGFDSQQTF RAMA_KLEPN 74 74 -
IKEITEICGYPSIQYF XYLR_HAEIN 353 353 -
IIQIGLSCGFSSGPHF O30507 278 278 -
ISQVSQSCGYNSTSYF ADIY_ECOLI 213 213 -
IGDIAICVGIANAPYF ADAA_BACSU 166 166 -
VMTVAADLGYANASHF Q56951 285 285 -
VYEICLRYGFESQQTF RAMA_ENTCL 74 74 -
VTEAAREVGFSNRGHF P72608 291 291 -
LKEIAHQTGYQDEFYF YBBB_BACSU 231 231 -
ITEIALDYGFLHLGRF Q51995 282 282 -
ITEIALDYGFLHLGRF XYLS_PSEPU 282 282 -
ITEIALDYGFLHLGRF XYS1_PSEPU 282 282 -
IVDISERLFYDSQQTF Q07681 74 74 -
VKDIAEKLKYKNSQNF O32071 735 735 -
VKDIAEKLKYKNSQNF O30502 207 207 -
VTEIAQRWGFLHVGRF THCR_RHOSO 295 295 -
ISQISNMIGISSASYF CSVR_ECOLI 230 230 -
IIDIALYYQFESQEAF O31456 73 73 -
VARVGQAVGYDDSYYF MMSR_PSEAE 266 266 -
VSELAAHWQFADSSHF Q54308 291 291 -
VTDVCFESGFNNISNF O52770 257 257 -
VTAVAFRWGFSHLGHF O05934 211 211 -
MGVIAETVGMEDPTYF YISR_BACSU 248 248 -
ISEIARENGYKCPSRF YBCM_ECOLI 229 229 -
INDVSRLIGISSPSYF VIRF_SHIDY 225 225 -
VQKVAHTLGYDSTTAF YEAM_ECOLI 225 225 -
ITEVALDYGFLHLGRF XYS2_PSEPU 107 107 -
ITEVALDYGFLHLGRF O85815 282 282 -
VQQVSTRLGYTEVSTF YR12_MYCTU 310 310 -
ISEVALRCGFSSHSQL P73364 208 208 -
VTEVCFAVGCTSLGSF O86700 76 76 -
VTEVALDYGFLHLGRF O51847 283 283 -
QAEISWRVGYENVDHF YDIP_ECOLI 248 248 -
LIDSALDSGFNSLSGF O68498 149 149 -
VTEVSYQVGFNSTSYF P96660 256 256 -
VAQVAQRVGYTNPEAF P72600 309 309 -
ISALARKWGFLDPSTF P72312 277 277 -
VTEMALDYGFFHTGRF XYS3_PSEPU 282 282 -
VTEMALDYGFFHTGRF XYS4_PSEPU 282 282 -
LTVVSEALGFQNLSSF O34901 202 202 -
ISDISRQVGYKDPLLF LACR_STAXY 239 239 -
ITQLAVNHGYSSPSHF INVF_SALTY 177 177 -
ITETALFYGFGHLGRF O87613 284 284 -
LASIAHSVGYGSESAL ARAL_STRLI 267 267 -
LAAIAHSVGYGSESAL ARAL_STRAT 267 267 -
IIDIAFKYGYSSSESY O87252 50 50 -
IGDISARWGLSDQSRL P96427 239 239 -
VQQAAHFVGYRHATNF O52834 272 272 -
VQQAAHFVGYRHATNF O52066 293 293 -
LSQIAVLLGYSEQSAL O53299 301 301 -
ITELALNLQFSNPGRF Y4FK_RHISN 384 384 -
LSQIAVLLGYSEQSAR V38K_MYCTU 300 300 -
LKEICLKWGFFQFGRF O68474 295 295 -
ILYLAERYGFESQQTL MARA_ECOLI 79 79 -
ILYLAERYGFESQQTL MARA_SALTY 79 79 -
VTSVASECGWATPSAF P96245 214 214 -
VGEVAHALGFADQSHL O87004 228 228 -
IGRVGAAVGFPDAANF O88020 266 266 -

Motif 2 width=17
Element Seqn Id St Int Rpt
FSRVFRRQFDRTPSDYR SOXS_ECOLI 87 -1 -
FSRVFRREFDRTPSDYR SOXS_SALTY 87 -1 -
FTQSYRRRFGCTPSQAR LCRF_YERPE 247 -1 -
FTQSYRRRFGCTPSQAR VIRF_YEREN 247 -1 -
FTQSYRRRFGCTPSRSR EXSA_PSEAE 271 -1 -
FTRIFKKHFNTTPAKFR PQRA_PROVU 89 -1 -
FTRFFKRLSGVSPSVFR Q51543 269 -1 -
FSKAFKNYFGKSPSKFR MSMR_STRMU 256 -1 -
FRRAFRKWTGKLPSDYR P72171 320 -1 -
FHKAFVREFGCTPGEYR YKGD_ECOLI 260 -1 -
FIRLFVKHFGITPKQFL AGGR_ECOLI 243 -1 -
FICAFKDYYGVTPSHYF APPY_ECOLI 218 -1 -
FISVFKAFYGLTPLNYL ENVY_ECOLI 228 -1 -
FYSTFGKYVGMSPQQYR MELR_ECOLI 274 -1 -
FCDAFKRKYGMTPSQFR URER_PROMI 250 -1 -
FIKTFKKLTSFTPKSYR CELD_ECOLI 255 -1 -
FCRVFRRQFGLTPGEYS YPDC_ECOLI 264 -1 -
FSQAFKRQFEQSPKHYR O31249 287 -1 -
FSREFKKLFGCSPREYR YKGA_ECOLI 99 -1 -
FNKSFRKLAGMTPSDFR O68525 267 -1 -
FSRVFRKRVGVSPSDFR ARAC_ERWCH 266 -1 -
FIKTFKEYYGVTPKKFE FAPR_ECOLI 232 -1 -
FSNAFKRLFSQTPGSLR O87389 303 -1 -
FSRAFQKMHGVTPSNAR O32788 88 -1 -
FSKAFKRYSGASPSYYR RAFR_PEDPE 256 -1 -
FSTVFKQRFGMTPGEYR FEAR_ECOLI 281 -1 -
FTRRFKYIFKVTPSYYR TETD_ECOLI 111 -1 -
FSRVFKKCTGASPSEFR ARAC_SALTY 260 -1 -
FSRVFKKCTGASPSEFR ARAC_ECOLI 260 -1 -
FSRVFKKCTGASPSEFR ARAC_CITFR 261 -1 -
FSQAFRRLYGMSPTRYQ LUMQ_PHOLE 228 -1 -
FARFFNRLVGCSPSAYR Q46985 272 -1 -
FHHAFKRAMGVAPLKYR O52494 269 -1 -
FCKVFRQTYQVTPQAYR POCR_SALTY 275 -1 -
FTRAFKKQFAQTPALYR ROB_ECOLI 88 -1 -
FIYAFRKHFGNSPKRVS P76877 144 -1 -
FIYAFRKHFGNSPKRVS P76135 215 -1 -
FINTFRQYYGVTPHQFA YHIW_ECOLI 218 -1 -
FAKRFKAYLGISPSLYR AARP_PROST 102 -1 -
FSVVFTRETGMTPSQWR RHAR_ECOLI 289 -1 -
FCKVFKNYYQLSPSQYR YA52_HAEIN 277 -1 -
FIYVFRNYYGMTPTEYQ YHIX_ECOLI 224 -1 -
FYSVFKKAYDTTPKEYR XYLR_ECOLI 368 -1 -
FIRVFNKHYGVTPKQFF CFAD_ECOLI 243 -1 -
FTREFKKIFGYTPRQYR CAFR_YERPE 89 -1 -
FIKVFKEYYNTTPKKYN PERA_ECOLI 247 -1 -
FIKVFKEYYNTTPKKYN Q47074 247 -1 -
FSTVFKSTMNVAPSEYL TCPN_VIBCH 251 -1 -
FSAVYKARFGELPSQTL O05142 301 -1 -
FSTLFRREFNWSPRDIR RHAS_ECOLI 253 -1 -
FCDVFKRKYNMTPSQFR URER_ECOLI 250 -1 -
FSAAFRKQFGVSPKQWM P72595 307 -1 -
FCRLFRKNTERSPSEYR YIJO_ECOLI 252 -1 -
FSREFKRYFGVTPGEDA YQHC_ECOLI 350 -1 -
FARAFQNLHGINPSKAR P96662 88 -1 -
FIRIFNKHYGVTPKQFF RNS_ECOLI 243 -1 -
FSRFFFKYTGETPRVWR Q52799 270 -1 -
FIKRFKEQENVTPTIFR O52846 254 -1 -
FGAAFRRTTGTTPGRFR O69819 238 -1 -
FSLVFKKYTGLTPSEFR O31517 343 0 -
FSTLFRREFNWSPRDIR RHAS_SALTY 252 -1 -
FTRVFTRTFNQPPGAYR RAMA_KLEPN 89 -1 -
FYSVFKKEFEMTPKEFR XYLR_HAEIN 368 -1 -
FSSAYRNFFGVTPREDR O30507 293 -1 -
FISVFKDFYGMTPLHYV ADIY_ECOLI 228 -1 -
FITLFKKKTGQTPARFR ADAA_BACSU 181 -1 -
FSAAFQKQFGVTPSTFK Q56951 300 -1 -
FTRIFTRTFHQPPGAYR RAMA_ENTCL 89 -1 -
FAASFRKKFGVNPKAYS P72608 306 -1 -
FSRIFKKYTGCSPTSYM YBBB_BACSU 246 -1 -
FAENYRSAFGELPSDTL Q51995 297 -1 -
FAENYRSAFGELPSDTL XYLS_PSEPU 297 -1 -
FAENYRSAFGELPSDTL XYS1_PSEPU 297 -1 -
FTREFKKNSGYTPLQYR Q07681 89 -1 -
FIRSFKKLEGITPGNYR O32071 750 -1 -
FIRSFKKLEGITPGNYR O30502 222 -1 -
FAGEYKQTFGVSPSEDL THCR_RHOSO 310 -1 -
FIRIFNKHFGVTRSSFL CSVR_ECOLI 245 -1 -
FTRTFKKMYHMPPGAYR O31456 88 -1 -
FSRLFSKVMGLSPSAYR MMSR_PSEAE 281 -1 -
FIRVFKKTYGQTPTEYA Q54308 306 -1 -
FNRRFQQLKGMTPSHYR O52770 272 -1 -
FTTDYKRRFGESPSETL O05934 226 -1 -
FSKLFKQIEGISPIEYR YISR_BACSU 263 -1 -
FTERFHNRFNITPREIR YBCM_ECOLI 244 -1 -
FIRKFNEYYGITPKKFY VIRF_SHIDY 240 -1 -
FITMFKKGLGQTPGRYI YEAM_ECOLI 240 -1 -
FAEKYRSTFGELPSDTL XYS2_PSEPU 122 -1 -
FAEKYRSTFGELPSDTL O85815 297 -1 -
FSHAFKRWYGVAPSEYC YR12_MYCTU 325 -1 -
LNHHFRNLLGITPKEYR P73364 223 -1 -
FSSRFTELVGESPSAYR O86700 91 -1 -
FAEYYKNTFGELPSVTL O51847 298 -1 -
FAKLFLRHVGCSPSDYR YDIP_ECOLI 263 -1 -
FAYTFKKATGLNPSKSK O68498 164 -1 -
FISKFQQAMNMTPLSYK P96660 271 -1 -
FCMAFRRKFGVSPKTHQ P72600 324 -1 -
FSRAFKDAYGITAREWA P72312 292 -1 -
FAENYRSTFGELPSDTL XYS3_PSEPU 297 -1 -
FAENYRSTFGELPSDTL XYS4_PSEPU 297 -1 -
FTRWFTKSTGMPPRLYR O34901 217 -1 -
FSKNFTKHFEISASEYR LACR_STAXY 254 -1 -
FSSEIKELIGVSPRKLS INVF_SALTY 192 -1 -
FAAYYRQRFGESPHQTA O87613 299 -1 -
LSVAFKRVLGMPPGDYR ARAL_STRLI 282 -1 -
LSVAFKRVLGMNPGDYR ARAL_STRAT 282 -1 -
YSRSFQQLFNISPSKAR O87252 65 -1 -
LSRLFRELKGCSPSEFR P96427 254 -1 -
FATAFRERYGVAPSQLG O52834 287 -1 -
FATAFRERYGVAPSQLG O52066 308 -1 -
LNRSCRRWFGMTPRQYR O53299 316 -1 -
FSVLYKSAYGLSPSSAL Y4FK_RHISN 399 -1 -
RNRSCRRWFGMTPRQYR V38K_MYCTU 315 -1 -
FSALYRAHYGENPSATR O68474 310 -1 -
LTRTFKNYFDVPPHKYR MARA_ECOLI 94 -1 -
LTRTFKNYFDVPPHKYR MARA_SALTY 94 -1 -
FIDTYRQAFGHTPGQAA P96245 229 -1 -
LTRYFTSAYGISPGRYQ O87004 243 -1 -
FSKFFQQHTDQTPAAFR O88020 281 -1 -