WORKLIST ENTRIES (1):
SHALCHANNEL View alignment Shal voltage-gated K+ channel family signature
Type of fingerprint: COMPOUND with 9 elements
Links:
PRINTS; PR00169 KCHANNEL; PR01491 KVCHANNEL
PRINTS; PR01495 SHABCHANNEL; PR01496 SHAKERCHANEL; PR01498 SHAWCHANNEL
PRINTS; PR01492 KV6CHANNEL; PR01493 KV8CHANNEL; PR01494 KV9CHANNEL
PRINTS; PR01515 KV41CHANNEL; PR01517 KV42CHANNEL; PR01518 KV43CHANNEL
Creation date 26-FEB-2001
1. MILLER, C.
An overview of the potassium channel family.
GENOME BIOL. 1(4) 1-5 (2000).
2. ASHCROFT, F.M.
Voltage-gated K+ channels.
IN ION CHANNELS AND DISEASE, ACADEMIC PRESS, 2000, PP.97-123.
3. SANSOM, M.S.
Putting the parts together.
CURR.BIOL. 9(19) R738-R741 (1999).
4. CONLEY, E.C. AND BRAMMER, W.J.
Shal.
IN THE ION CHANNEL FACTSBOOK, VOLUME IV, ACADEMIC PRESS, 1999, PP.617-646.
Potassium ion (K+) channels are a structurally diverse group of proteins
that facilitate the flow of K+ ions across cell membranes. They are
ubiquitous, being present in virtually all cell types. Activation of K+
channels tends to hyperpolarise cells, reducing the membrane's electrical
resistance, dampening nervous activity. In eukaryotic cells, K+ channels
are involved in neural signalling and generation of the cardiac rhythm, and
act as effectors in signal transduction pathways involving G protein-
coupled receptors (GPCRs). In prokaryotic cells, they play a role in the
maintenance of ionic homeostasis [1].
Structurally, Kv channels belong to the subfamily of K+ channels whose
subunits contain 6 transmembrane (TM) domains: these are the voltage-
gated K+ (Kv) channels, the KCNQ channels, the EAG-like K+ channels and
3 kinds of Ca2+-activated K+ channels (BK, IK and SK) [2]. All K+
channels share a characteristic sequence feature: a TMxTVGYG motif
that resides between the 2 C-terminal membrane spanning helices, and
forms the K+-selective pore domain [1-2].
The Kv family can be divided into 4 subfamilies on the basis of sequence
similarity and function: Shaker (Kv1), Shab (Kv2), Shaw (Kv3) and Shal
(Kv4). All consist of pore-forming alpha subunits that associate with
different types of beta subunit. To form a functional K+ channel pore,
4 alpha subunits and 4 beta subunits are required. The alpha subunits
have 6 well-conserved TM domains, a pore loop region and variable length
N- and C-termini. TM domains 5 and 6, and the loop region, form the K+
channel pore through which the K+ ions pass [3].
The first Shal (Kv4) sequence was found in Drosophila. Several vertebrate
K+ channels with similar amino acid sequences were subsequently found and,
together with the Drosophila Shal channel, now constitute the Shal (Kv4)
family. These channels support outward K+-selective currents and are
inhibited by free fatty acids [4]. The Shal family can be further divided
into 3 families, designated Kv4.1, Kv4.2 and Kv4.3.
SHALCHANNEL is a 9-element fingerprint that provides a signature for the
Shal voltage-gated K+ channel family. The fingerprint was derived from an
initial alignment of 8 sequences: the motifs were drawn from conserved
regions spanning the full alignment length: motifs 1-3 reside at the
N-terminus; motif 4 spans putative TM domain 1; motif 5 spans the loop
between TM domains 1 and 2; motif 6 spans TM domain 5; and motifs 7-9 reside
at the C-terminus. Two iterations on SPTR39_14f were required to reach
convergence, at which point a true set comprising 22 sequences was
identified. Several partial matches were also found, all of which are
members of the Shal family or are closely related potassium channels that
fail to make significant matches with one or more motifs.
SUMMARY INFORMATION
22 codes involving 9 elements
3 codes involving 8 elements
0 codes involving 7 elements
0 codes involving 6 elements
1 codes involving 5 elements
0 codes involving 4 elements
0 codes involving 3 elements
1 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
9| 22 22 22 22 22 22 22 22 22
8| 3 3 1 3 3 3 3 3 2
7| 0 0 0 0 0 0 0 0 0
6| 0 0 0 0 0 0 0 0 0
5| 1 0 0 1 1 1 1 0 0
4| 0 0 0 0 0 0 0 0 0
3| 0 0 0 0 0 0 0 0 0
2| 1 0 0 0 1 0 0 0 0
--+----------------------------------------------
| 1 2 3 4 5 6 7 8 9
True positives..
O60576 Q9Z0V1 Q9Z0V0 Q9UK17
Q9UK16 Q9UH86 Q9UH85 Q9TTT5
O60577 Q9PTD3 Q63286 Q62897
P70622 O08723 O57662 Q63881
Q9Z0V2 Q9UNH9 Q9UBY7 O75671
Q03719 CIKL_DROME
Subfamily: Codes involving 8 elements
Subfamily True positives..
Q99249 Q26040 Q9VW11
Subfamily: Codes involving 5 elements
Subfamily True positives..
P91784
Subfamily: Codes involving 2 elements
Subfamily True positives..
P91783
PROTEIN TITLES
O60576 KV4.3 POTASSIUM CHANNEL SHORT SPLICE VARIANT - Homo sapiens
Q9Z0V1 POTASSIUM CHANNEL KV4.3L - Mus musculus (Mouse).
Q9Z0V0 POTASSIUM CHANNEL KV4.3M - Mus musculus (Mouse).
Q9UK17 VOLTAGE GATED POTASSIUM CHANNEL KV4.3 LONG SPLICE VARIANT -
Q9UK16 VOLTAGE GATED POTASSIUM CHANNEL KV4.3 SHORT SPLICE VARIANT -
Q9UH86 POTASSIUM IONIC CHANNEL KV4.3 SHORT ISOFORM - Homo sapiens (
Q9UH85 POTASSIUM IONIC CHANNEL KV4.3 LONG ISOFORM - Homo sapiens (H
Q9TTT5 POTASSIUM CHANNEL KV4.3 - Oryctolagus cuniculus (Rabbit).
O60577 KV4.3 POTASSIUM CHANNEL LONG SPLICE VARIANT - Homo sapiens (
Q9PTD3 POTASSIUM CHANNEL KV4.3 - Gallus gallus (Chicken).
Q63286 VOLTAGE-GATED K+ CHANNEL - Rattus norvegicus (Rat).
Q62897 SHAL-RELATED POTASSIUM CHANNEL KV4.3 - Rattus norvegicus (Ra
P70622 KV4.3 POTASSIUM CHANNEL - Rattus norvegicus (Rat).
O08723 KV4.3 - Rattus norvegicus (Rat).
O57662 POTASSIUM CHANNEL XKV4.3 - Xenopus laevis (African clawed fr
Q63881 SHAL1 - Rattus norvegicus (Rat).
Q9Z0V2 POTASSIUM CHANNEL KV4.2 - Mus musculus (Mouse).
Q9UNH9 POTASSIUM CHANNEL KV4.2 - Homo sapiens (Human).
Q9UBY7 POTASSIUM CHANNEL KV4.2 - Homo sapiens (Human).
O75671 SHAL-TYPE POTASSIUM CHANNEL - Homo sapiens (Human).
Q03719 POTASSIUM CHANNEL PROTEIN - Mus musculus (Mouse).
CIKL_DROME VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN SHAL (SHAL2) - Droso
Q99249 POTASSIUM CHANNEL PROTEIN RK5 - Rattus norvegicus (Rat).
Q26040 SHAL 1 POTASSIUM CHANNEL - Panulirus interruptus (California
Q9VW11 SHAL PROTEIN - Drosophila melanogaster (Fruit fly).
P91784 POTASSIUM CHANNEL ALPHA SUBUNIT - Polyorchis penicillatus (H
P91783 POTASSIUM CHANNEL GAMMA SUBUNIT - Polyorchis penicillatus (H
SCAN HISTORY
SPTR39_14f 2 150 NSINGLE
INITIAL MOTIF SETS
SHALCHANNEL1 Length of motif = 14 Motif number = 1
Shal voltage-gated K+ channel family motif I - 1
PCODE ST INT
GSSEKEFFYDADSG O75671 67 67
GSTEKEFFFNEDTK P70622 67 67
GSTEKEFFFNEDTK Q9PTD3 67 67
GSTEKEFFFNEDTK Q9TTT5 67 67
GSSERDFFYHPETQ Q9UBY7 68 68
GSTEKEFFFNEDTK Q9Z0V0 67 67
GSSERDFFYHPETQ Q9Z0V2 68 68
SHALCHANNEL2 Length of motif = 17 Motif number = 2
Shal voltage-gated K+ channel family motif II - 1
PCODE ST INT
ENAERLAEDEEAEQAGD O75671 142 61
ENAERLMDDNESENNQE P70622 142 61
ENAERLMDDNDSENNQE Q9PTD3 142 61
ENAERLMDDNDSENNQE Q9TTT5 142 61
ENAERLQDDADTDTAGE Q9UBY7 143 61
ENAERLMDDNDSENNQE Q9Z0V0 142 61
ENAERLQDDADTDNTGE Q9Z0V2 143 61
SHALCHANNEL3 Length of motif = 15 Motif number = 3
Shal voltage-gated K+ channel family motif III - 1
PCODE ST INT
LPAGSSLRQRLWRAF O75671 162 3
SMPSLSFRQTMWRAF P70622 159 0
SMPSLSFRQTMWRAF Q9PTD3 160 1
SMPSLSFRQTMWRAF Q9TTT5 159 0
ALPTMTARQRVWRAF Q9UBY7 161 1
SMPSLSFRQTMWRAF Q9Z0V0 159 0
ALPTMTARQRVWRAF Q9Z0V2 161 1
SHALCHANNEL4 Length of motif = 15 Motif number = 4
Shal voltage-gated K+ channel family motif IV - 1
PCODE ST INT
TSTAALVFYYVTGFF O75671 181 4
TSTLALVFYYVTGFF P70622 178 4
TSTLALVFYYVTGFF Q9PTD3 179 4
TSTLALVFYYVTGFF Q9TTT5 178 4
TSTMALVFYYVTGFF Q9UBY7 180 4
TSTLALVFYYVTGFF Q9Z0V0 178 4
TSTMALVFYYVTGFF Q9Z0V2 180 4
SHALCHANNEL5 Length of motif = 17 Motif number = 5
Shal voltage-gated K+ channel family motif V - 1
PCODE ST INT
PCGERFPQAFFCMDTAC O75671 222 26
PCGERYSVAFFCLDTAC P70622 217 24
PCGERYAVAFFCLDTAC Q9PTD3 218 24
PCGERYSVAFFCLDTAC Q9TTT5 217 24
PCGERYAVAFFCLDTAC Q9UBY7 220 25
PCGERYSVAFFCLDTAC Q9Z0V0 217 24
PCGERYAVAFFCLDTAC Q9Z0V2 220 25
SHALCHANNEL6 Length of motif = 20 Motif number = 6
Shal voltage-gated K+ channel family motif VI - 1
PCODE ST INT
KSCASELGFLLFSLTMAIII O75671 320 81
KSCASELGFLLFSLTMAIII P70622 315 81
KSCASELGFLLFSLTMAIII Q9PTD3 316 81
KSCASELGFLLFSLTMAIII Q9TTT5 315 81
KSCASELGFLLFSLTMAIII Q9UBY7 318 81
KSCASELGFLLFSLTMAIII Q9Z0V0 315 81
KSCASELGFLLFSLTMAIII Q9Z0V2 318 81
SHALCHANNEL7 Length of motif = 12 Motif number = 7
Shal voltage-gated K+ channel family motif VII - 1
PCODE ST INT
QNQRADKRRAQQ O75671 417 77
QNQRADKRRAQK P70622 412 77
QNQRADKRRAQK Q9PTD3 413 77
QNQRADKRRAQK Q9TTT5 412 77
QNQRADKRRAQK Q9UBY7 415 77
QNQRADKRRAQK Q9Z0V0 412 77
QNQRADKRRAQK Q9Z0V2 415 77
SHALCHANNEL8 Length of motif = 17 Motif number = 8
Shal voltage-gated K+ channel family motif VIII - 1
PCODE ST INT
RLARIRLAKSGTTNAFL O75671 431 2
RLARIRVAKTGSSNAYL P70622 426 2
RLARIRVAKTGSSNAYL Q9PTD3 427 2
RLARIRVAKTGSSNAYL Q9TTT5 426 2
RLARIRAAKSGSANAYM Q9UBY7 429 2
RLARIRVAKTGSSNAYL Q9Z0V0 426 2
RLARIRAAKSGSANAYM Q9Z0V2 429 2
SHALCHANNEL9 Length of motif = 15 Motif number = 9
Shal voltage-gated K+ channel family motif IX - 1
PCODE ST INT
EQQHHHLLHCLEKTT O75671 475 27
ESQHHHLLHCLEKTT P70622 473 30
ESQHHHLLHCLEKTT Q9PTD3 475 31
ESQHHHLLHCLEKTT Q9TTT5 473 30
ETQHHHLLHCLEKTT Q9UBY7 475 29
ESQHHHLLHCLEKTT Q9Z0V0 473 30
ETQHHHLLHCLEKTT Q9Z0V2 475 29
FINAL MOTIF SETS
SHALCHANNEL1 Length of motif = 14 Motif number = 1
Shal voltage-gated K+ channel family motif I - 2
PCODE ST INT
GSTEKEFFFNEDTK O60576 67 67
GSTEKEFFFNEDTK Q9Z0V1 67 67
GSTEKEFFFNEDTK Q9Z0V0 67 67
GSTEKEFFFNEDTK Q9UK17 67 67
GSTEKEFFFNEDTK Q9UK16 67 67
GSTEKEFFFNEDTK Q9UH86 67 67
GSTEKEFFFNEDTK Q9UH85 67 67
GSTEKEFFFNEDTK Q9TTT5 67 67
GSTEKEFFFNEDTK O60577 67 67
GSTEKEFFFNEDTK Q9PTD3 67 67
GSTEKEFFFNEDTK O08723 67 67
GSTEKEFFFNEDTK P70622 67 67
GSTEKEFFFNEDTK Q62897 67 67
GSTEKEFFFNEDTK Q63286 67 67
GRPEKEFFFNEETK O57662 67 67
GSSERDFFYHPETQ Q63881 68 68
GSSERDFFYHPETQ Q9Z0V2 68 68
GSSERDFFYHPETQ Q9UBY7 68 68
GSSERDFFYHPETQ Q9UNH9 68 68
GSSEKEFFYDADSG O75671 67 67
GSSEKEFFYDAESG Q03719 67 67
GSNEREFFYDEDCK CIKL_DROME 68 68
SHALCHANNEL2 Length of motif = 17 Motif number = 2
Shal voltage-gated K+ channel family motif II - 2
PCODE ST INT
ENAERLMDDNDSENNQE O60576 142 61
ENAERLMDDNDSENNQE Q9Z0V1 142 61
ENAERLMDDNDSENNQE Q9Z0V0 142 61
ENAERLMDDNDSENNQE Q9UK17 142 61
ENAERLMDDNDSENNQE Q9UK16 142 61
ENAERLMDDNDSENNQE Q9UH86 142 61
ENAERLMDDNDSENNQE Q9UH85 142 61
ENAERLMDDNDSENNQE Q9TTT5 142 61
ENAERLMDDNDSENNQE O60577 142 61
ENAERLMDDNDSENNQE Q9PTD3 142 61
ENAERLMDDNESENNQE O08723 142 61
ENAERLMDDNESENNQE P70622 142 61
ENAERLMDDNESENNQE Q62897 142 61
ENAERLMDDNESENNQE Q63286 142 61
ENAERLMDDNEFENKQE O57662 142 61
ENAERLQDDADTDNTGE Q63881 143 61
ENAERLQDDADTDNTGE Q9Z0V2 143 61
ENAERLQDDADTDTAGE Q9UBY7 143 61
ENAERLQDDADTDTAGE Q9UNH9 143 61
ENAERLAEDEEAEQAGD O75671 142 61
ENAERLAEDEEAEQAGE Q03719 142 61
ENAERLMDDKLSENGDQ CIKL_DROME 143 61
SHALCHANNEL3 Length of motif = 15 Motif number = 3
Shal voltage-gated K+ channel family motif III - 2
PCODE ST INT
SMPSLSFRQTMWRAF O60576 159 0
SMPSLSFRQTMWRAF Q9Z0V1 159 0
SMPSLSFRQTMWRAF Q9Z0V0 159 0
SMPSLSFRQTMWRAF Q9UK17 159 0
SMPSLSFRQTMWRAF Q9UK16 159 0
SMPSLSFRQTMWRAF Q9UH86 159 0
SMPSLSFRQTMWRAF Q9UH85 159 0
SMPSLSFRQTMWRAF Q9TTT5 159 0
SMPSLSFRQTMWRAF O60577 159 0
SMPSLSFRQTMWRAF Q9PTD3 160 1
SMPSLSFRQTMWRAF O08723 159 0
SMPSLSFRQTMWRAF P70622 159 0
SMPSLSFRQTMWRAF Q62897 159 0
SMPSLSFRQTMWRAF Q63286 159 0
AMPSLNLRETMWRAF O57662 159 0
ALPTMTARQRVWRAF Q63881 161 1
ALPTMTARQRVWRAF Q9Z0V2 161 1
ALPTMTARQRVWRAF Q9UBY7 161 1
ALPTMTARQRVWRAF Q9UNH9 161 1
LPAGSSLRQRLWRAF O75671 162 3
LPAGSSLRQRLWRAF Q03719 162 3
LQQLTNMRQKMWRAF CIKL_DROME 161 1
SHALCHANNEL4 Length of motif = 15 Motif number = 4
Shal voltage-gated K+ channel family motif IV - 2
PCODE ST INT
TSTLALVFYYVTGFF O60576 178 4
TSTLALVFYYVTGFF Q9Z0V1 178 4
TSTLALVFYYVTGFF Q9Z0V0 178 4
TSTLALVFYYVTGFF Q9UK17 178 4
TSTLALVFYYVTGFF Q9UK16 178 4
TSTLALVFYYVTGFF Q9UH86 178 4
TSTLALVFYYVTGFF Q9UH85 178 4
TSTLALVFYYVTGFF Q9TTT5 178 4
TSTLALVFYYVTGFF O60577 178 4
TSTLALVFYYVTGFF Q9PTD3 179 4
TSTLALVFYYVTGFF O08723 178 4
TSTLALVFYYVTGFF P70622 178 4
TSTLALVFYYVTGFF Q62897 178 4
TSTLALVFYYVTGFF Q63286 178 4
TSTLALVFYYVTGFF O57662 178 4
TSTMALVFYYVTGFF Q63881 180 4
TSTMALVFYYVTGFF Q9Z0V2 180 4
TSTMALVFYYVTGFF Q9UBY7 180 4
TSTMALVFYYVTGFF Q9UNH9 180 4
TSTAALVFYYVTGFF O75671 181 4
TSTAALVFYYVTGFF Q03719 181 4
TSTSALVFYYVTGFF CIKL_DROME 180 4
SHALCHANNEL5 Length of motif = 17 Motif number = 5
Shal voltage-gated K+ channel family motif V - 2
PCODE ST INT
PCGERYSVAFFCLDTAC O60576 217 24
PCGERYSVAFFCLDTAC Q9Z0V1 217 24
PCGERYSVAFFCLDTAC Q9Z0V0 217 24
PCGERYSVAFFCLDTAC Q9UK17 217 24
PCGERYSVAFFCLDTAC Q9UK16 217 24
PCGERYSVAFFCLDTAC Q9UH86 217 24
PCGERYSVAFFCLDTAC Q9UH85 217 24
PCGERYSVAFFCLDTAC Q9TTT5 217 24
PCGERYSVAFFCLDTAC O60577 217 24
PCGERYAVAFFCLDTAC Q9PTD3 218 24
PCGERYSVAFFCLDTAC O08723 217 24
PCGERYSVAFFCLDTAC P70622 217 24
PCGERYSVAFFCLDTAC Q62897 217 24
PCGERYSVAFFCLDTAC Q63286 217 24
PCGERYQVAFFCLDTAC O57662 217 24
PCGERYAVAFFCLDTAC Q63881 220 25
PCGERYAVAFFCLDTAC Q9Z0V2 220 25
PCGERYAVAFFCLDTAC Q9UBY7 220 25
PCGERYAVAFFCLDTAC Q9UNH9 220 25
PCGERFPQAFFCMDTAC O75671 222 26
SCGDRFPTAFFCMDTAC Q03719 222 26
PCGERYKIVFFCLDTAC CIKL_DROME 220 25
SHALCHANNEL6 Length of motif = 20 Motif number = 6
Shal voltage-gated K+ channel family motif VI - 2
PCODE ST INT
KSCASELGFLLFSLTMAIII O60576 315 81
KSCASELGFLLFSLTMAIII Q9Z0V1 315 81
KSCASELGFLLFSLTMAIII Q9Z0V0 315 81
KSCASELGFLLFSLTMAIII Q9UK17 315 81
KSCASELGFLLFSLTMAIII Q9UK16 315 81
KSCASELGFLLFSLTMAIII Q9UH86 315 81
KSCASELGFLLFSLTMAIII Q9UH85 315 81
KSCASELGFLLFSLTMAIII Q9TTT5 315 81
KSCASELGFLLFSLTMAIII O60577 315 81
KSCASELGFLLFSLTMAIII Q9PTD3 316 81
KSCASELGFLLFSLTMAIII O08723 315 81
KSCASELGFLLFSLTMAIII P70622 315 81
KSCASELGFLLFSLTMAIII Q62897 315 81
KSCASELGFLLFSLTMAIII Q63286 315 81
KSCASELGFLLFSLTMAIII O57662 319 85
KSCASELGFLLFSLTMAIII Q63881 318 81
KSCASELGFLLFSLTMAIII Q9Z0V2 318 81
KSCASELGFLLFSLTMAIII Q9UBY7 318 81
KSCASELGFLLFSLTMAIII Q9UNH9 318 81
KSCASELGFLLFSLTMAIII O75671 320 81
KSCASELGFLLFSLTMAIII Q03719 320 81
KSCASELGFLVFSLAMAIII CIKL_DROME 318 81
SHALCHANNEL7 Length of motif = 12 Motif number = 7
Shal voltage-gated K+ channel family motif VII - 2
PCODE ST INT
QNQRADKRRAQK O60576 412 77
QNQRADKRRAQK Q9Z0V1 412 77
QNQRADKRRAQK Q9Z0V0 412 77
QNQRADKRRAQK Q9UK17 412 77
QNQRADKRRAQK Q9UK16 412 77
QNQRADKRRAQK Q9UH86 412 77
QNQRADKRRAQK Q9UH85 412 77
QNQRADKRRAQK Q9TTT5 412 77
QNQRADKRRAQK O60577 412 77
QNQRADKRRAQK Q9PTD3 413 77
QNQRADKRRAQK O08723 412 77
QNQRADKRRAQK P70622 412 77
QNQRADKRRAQK Q62897 412 77
QNQRADKRRAQK Q63286 412 77
QNQRADKRRAQK O57662 417 78
QNQRADKRRAQK Q63881 415 77
QNQRADKRRAQK Q9Z0V2 415 77
QNQRADKRRAQK Q9UBY7 415 77
QNQRADKRRAQK Q9UNH9 415 77
QNQRADKRRAQQ O75671 417 77
QNQRADKRRAQQ Q03719 417 77
QNQRADKRKAQR CIKL_DROME 415 77
SHALCHANNEL8 Length of motif = 17 Motif number = 8
Shal voltage-gated K+ channel family motif VIII - 2
PCODE ST INT
RLARIRVAKTGSSNAYL O60576 426 2
RLARIRVAKTGSSNAYL Q9Z0V1 426 2
RLARIRVAKTGSSNAYL Q9Z0V0 426 2
RLARIRVAKTGSSNAYL Q9UK17 426 2
RLARIRVAKTGSSNAYL Q9UK16 426 2
RLARIRVAKTGSSNAYL Q9UH86 426 2
RLARIRVAKTGSSNAYL Q9UH85 426 2
RLARIRVAKTGSSNAYL Q9TTT5 426 2
RLARIRVAKTGSSNAYL O60577 426 2
RLARIRVAKTGSSNAYL Q9PTD3 427 2
RLARIRVAKTGSSNAYL O08723 426 2
RLARIRVAKTGSSNAYL P70622 426 2
RLARIRVAKTGSSNAYL Q62897 426 2
RLARIRVAKTGSSNAYL Q63286 426 2
RLARIRVAKTGSSTAYL O57662 431 2
RLARIRAAKSGSANAYM Q63881 429 2
RLARIRAAKSGSANAYM Q9Z0V2 429 2
RLARIRAAKSGSANAYM Q9UBY7 429 2
RLARIRAAKSGSANAYM Q9UNH9 429 2
RLARIRLAKSGTTNAFL O75671 431 2
RLARIRLAKSGTTNAFL Q03719 431 2
RLARIRIAKASSGAAFV CIKL_DROME 429 2
SHALCHANNEL9 Length of motif = 15 Motif number = 9
Shal voltage-gated K+ channel family motif IX - 2
PCODE ST INT
ESQHHHLLHCLEKTT O60576 473 30
ESQHHHLLHCLEKTT Q9Z0V1 473 30
ESQHHHLLHCLEKTT Q9Z0V0 473 30
ESQHHHLLHCLEKTT Q9UK17 473 30
ESQHHHLLHCLEKTT Q9UK16 473 30
ESQHHHLLHCLEKTT Q9UH86 473 30
ESQHHHLLHCLEKTT Q9UH85 473 30
ESQHHHLLHCLEKTT Q9TTT5 473 30
ESQHHHLLHCLEKTT O60577 473 30
ESQHHHLLHCLEKTT Q9PTD3 475 31
ESQHHHLLHCLEKTT O08723 473 30
ESQHHHLLHCLEKTT P70622 473 30
ESQHHHLLHCLEKTT Q62897 473 30
ESQHHHLLHCLEKTT Q63286 473 30
ESQHHHLLHCLEKTT O57662 478 30
ETQHHHLLHCLEKTT Q63881 475 29
ETQHHHLLHCLEKTT Q9Z0V2 475 29
ETQHHHLLHCLEKTT Q9UBY7 475 29
ETQHHHLLHCLEKTT Q9UNH9 475 29
EQQHHHLLHCLEKTT O75671 475 27
EQQHHHLLHCLEKTT Q03719 475 27
ELQHHHLLRCLEKTT CIKL_DROME 475 29
User query: Display/Full Code "SHALCHANNEL"