WORKLIST ENTRIES (1):
SHAKERCHANEL View alignment View Structure Shaker voltage-gated K+ channel family signature
Type of fingerprint: COMPOUND with 5 elements
Links:
PRINTS; PR00169 KCHANNEL; PR01491 KVCHANNEL
PRINTS; PR01495 SHABCHANNEL; PR01497 SHALCHANNEL; PR01498 SHAWCHANNEL
PRINTS; PR01492 KV6CHANNEL; PR01493 KV8CHANNEL; PR01494 KV9CHANNEL
PRINTS; PR01508 KV11CHANNEL; PR01509 KV12CHANNEL; PR01510 KV13CHANNEL
PRINTS; PR01511 KV14CHANNEL; PR01512 KV15CHANNEL; PR01513 KV16CHANNEL
Creation date 26-FEB-2001
1. MILLER, C.
An overview of the potassium channel family.
GENOME BIOL. 1(4) 1-5 (2000).
2. ASHCROFT, F.M.
Voltage-gated K+ channels.
IN ION CHANNELS AND DISEASE, ACADEMIC PRESS, 2000, PP.97-123.
3. SANSOM, M.S.
Putting the parts together.
CURR.BIOL. 9(19) R738-R741 (1999).
4. LITTLETON, J.T. AND GANETZKY, B.
Ion Channels and synaptic organisation: analysis of the Drosophila genome.
NEURON 26 35-43 (2000).
5. CONLEY, E.C. AND BRAMMAR, W.J.
Shaker.
IN THE ION CHANNEL FACTSBOOK, VOLUME IV, ACADEMIC PRESS, 1999, PP.559-614.
Potassium ion (K+) channels are a structurally diverse group of proteins
that facilitate the flow of K+ ions across cell membranes. They are
ubiquitous, being present in virtually all cell types. Activation of K+
channels tends to hyperpolarise cells, reducing the membrane's electrical
resistance, dampening nervous activity. In eukaryotic cells, K+ channels
are involved in neural signalling and generation of the cardiac rhythm, and
act as effectors in signal transduction pathways involving G protein-
coupled receptors (GPCRs). In prokaryotic cells, they play a role in the
maintenance of ionic homeostasis [1].
Structurally, Kv channels belong to the subfamily of K+ channels whose
subunits contain 6 transmembrane (TM) domains: these are the voltage-
gated K+ (Kv) channels, the KCNQ channels, the EAG-like K+ channels and
3 kinds of Ca2+-activated K+ channels (BK, IK and SK) [2]. All K+
channels share a characteristic sequence feature: a TMxTVGYG motif
that resides between the 2 C-terminal membrane spanning helices, and
forms the K+-selective pore domain [1-2].
The Kv family can be divided into 4 subfamilies on the basis of sequence
similarity and function: Shaker (Kv1), Shab (Kv2), Shaw (Kv3) and Shal
(Kv4). All consist of pore-forming alpha subunits that associate with
different types of beta subunit. To form a functional K+ channel pore,
4 alpha subunits and 4 beta subunits are required. The alpha subunits
have 6 well-conserved TM domains, a pore loop region and variable length
N- and C-termini. TM domains 5 and 6, and the loop region, form the K+
channel pore through which the K+ ions pass [3].
The first Shaker (Kv1) sequence was found in Drosophila. Several vertebrate
K+ channels with similar amino acid sequences were subsequently found and,
together with the Drosophila Shaker channel, now constitute the Shaker (Kv1)
family. These channels are mostly expressed in the brain, but can also be
found in non-excitable cells, such as lymphocytes [4,5].
SHAKERCHANEL is a 5-element fingerprint that provides a signature for the
Shaker voltage-gated K+ channel family. The fingerprint was derived from an
initial alignment of 14 sequences: the motifs were drawn from conserved
regions spanning the N-terminal half of the alignment: motifs 1-3 reside in
the N-terminal domain; motif 4 spans the N-terminus of TM domain 1; and
motif 5 spans the C-terminus of TM domain 1. Three iterations on SPTR39_15f
were required to reach convergence, at which point a true set comprising 41
sequences was identified. Several partial matches were also found, all of
which are members of the Shaker family or are closely related potassium
channels that fail to make significant matches with 2 or more motifs.
SUMMARY INFORMATION
41 codes involving 5 elements
0 codes involving 4 elements
3 codes involving 3 elements
7 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
5| 41 41 41 41 41
4| 0 0 0 0 0
3| 1 3 0 2 3
2| 1 2 0 6 5
--+--------------------------
| 1 2 3 4 5
True positives..
CIK1_HUMAN CIK1_RAT CIK1_MOUSE CIK3_HUMAN
CIK3_MOUSE CIK3_RAT Q91781 Q9PWM8
Q9YGX8 Q28656 CIK2_HUMAN Q9MYX3
CIK2_MOUSE CIK2_XENLA CIK4_BOVIN CIK4_MOUSE
CIK4_MUSPF CIK4_RAT CIK5_MUSPF CIK4_HUMAN
CIK5_RABIT CIK5_MOUSE Q9Z1R6 Q9TS07
CIK5_RAT CIK5_HUMAN Q61923 Q28293
CIK6_RAT CIK6_HUMAN Q9I830 O61335
CIK4_DROME CIK2_DROME CIK1_DROME Q9I829
Q16968 Q16322 Q26597 Q25376
Q9XXX0
Subfamily: Codes involving 3 elements
Subfamily True positives..
O70259 Q28649 Q26095
Subfamily: Codes involving 2 elements
Subfamily True positives..
Q9VWZ9 Q09658 CIKG_RAT CIKG_HUMAN
CIKE_RAT O76457 O18476
PROTEIN TITLES
CIK1_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.1 (HUKI) (HBK1)
CIK1_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.1 (IA) (RBK1) (R
CIK1_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.1 (MK1) (MBK1) -
CIK3_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.3 (HPCN3) (HGK5)
CIK3_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.3 (MK3) - Mus mu
CIK3_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.3 (RGK5) (RCK3)
Q91781 POTASSIUM CHANNEL - Xenopus laevis (African clawed frog).
Q9PWM8 POTASSIUM CHANNEL SHAKER ALPHA SUBUNIT VARIANT CKV1.4(M) - G
Q9YGX8 POTASSIUM CHANNEL SHAKER CKV1.4 - Gallus gallus (Chicken).
Q28656 GLIBENCLAMIDE-SENSITIVE VOLTAGE-GATED POTASSIUM CHANNEL - Or
CIK2_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.2 (RBK2) (HBK5)
Q9MYX3 POTASSIUM CHANNEL SUBUNIT KV 1.2 - Oryctolagus cuniculus (Ra
CIK2_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.2 (RBK2) (RCK5)
CIK2_XENLA VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.2 (XSHA2) - Xeno
CIK4_BOVIN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.4 (BAK4) - Bos t
CIK4_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.4 - Mus musculus
CIK4_MUSPF VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.4 (FK1) - Mustel
CIK4_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.4 (RCK4) (RHK1)
CIK5_MUSPF VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.5 - Mustela puto
CIK4_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.4 (HK1) (HPCN2)
CIK5_RABIT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.5 - Oryctolagus
CIK5_MOUSE VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.5 (KV1-5) - Mus
Q9Z1R6 VENTRICULAR POTASSIUM CHANNEL KV1.5 - Mus musculus (Mouse).
Q9TS07 BAK5=DELAYED RECTIFIER POTASSIUM CHANNEL KV1.5 HOMOLOG - Bos
CIK5_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.5 (KV1) (RCK7) -
CIK5_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.5 (HK2) (HPCN1)
Q61923 MURINE POTASSIUM CHANNEL PROTEIN - Mus musculus (Mouse).
Q28293 DELAYED RECTIFIER K+ CHANNEL - Canis familiaris (Dog).
CIK6_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.6 (RCK2) (KV2) -
CIK6_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV1.6 (HBK2) - Homo
Q9I830 SHAKER-RELATED POTASSIUM CHANNEL TSHA1 - Oncorhynchus mykiss
O61335 POTASSIUM CHANNEL - Panulirus interruptus (California spiny
CIK4_DROME VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN, LARVAL (SHAKER-EPSI
CIK2_DROME VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN, LATE POPULATION (SH
CIK1_DROME VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN, ADULT (SHAKER-ALPHA
Q9I829 SHAKER-RELATED POTASSIUM CHANNEL TSHA2 - Oncorhynchus mykiss
Q16968 POTASSIUM CHANNEL - Aplysia californica (California sea hare
Q16322 CYCLIC GMP GATED POTASSIUM CHANNEL - Homo sapiens (Human).
Q26597 POTASSIUM CHANNEL PROTEIN - Schistosoma mansoni (Blood fluke
Q25376 VOLTAGE-DEPENDENT POTASSIUM CHANNEL SQKV1A - Loligo opalesce
Q9XXX0 TUKVI - Halocynthia roretzi (Sea squirt).
O70259 VOLTAGE-GATED POTASSIUM CHANNEL KV1.7 - Mus musculus (Mouse)
Q28649 CGMP-GATED POTASSIUM CHANNEL - Oryctolagus cuniculus (Rabbit
Q26095 POTASSIUM CHANNEL HOMOLOG - Polyorchis penicillatus (Hydrome
Q9VWZ9 SH GENE PRODUCT - Drosophila melanogaster (Fruit fly).
Q09658 PUTATIVE POTASSIUM CHANNEL PROTEIN ZK1321.2 IN CHROMOSOME II
CIKG_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.4 (RAW3) - Rattu
CIKG_HUMAN VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.4 (KSHIIIC) - Ho
CIKE_RAT VOLTAGE-GATED POTASSIUM CHANNEL PROTEIN KV3.2 (KSHIIIA) - Ra
O76457 SHAW POTASSIUM CHANNEL KV3.1A - Aplysia californica (Califor
O18476 KV2 VOLTAGE-GATED POTASSIUM CHANNEL - Loligo pealeii (Longfi
SCAN HISTORY
SPTR39_15f 3 60 NSINGLE
INITIAL MOTIF SETS
SHAKERCHANEL1 Length of motif = 12 Motif number = 1
Shaker voltage-gated K+ channel family motif I - 1
PCODE ST INT
PKKRMRYFDPLR CIK1_HUMAN 66 66
PKKRMRYFDPLR CIK1_MOUSE 66 66
PKKRMRYFDPLR CIK1_RAT 66 66
PKKRMRYFDPLR CIK2_HUMAN 62 62
PKKRMRYFDPLR CIK2_XENLA 62 62
PKRRMRYFDPLR CIK3_RAT 83 83
PKRRMRYFDPLR CIK3_MOUSE 86 86
PEKRTQYFDPLR CIK4_BOVIN 213 213
PEKRTQYFDPLR CIK4_MOUSE 206 206
PEKRTQYFDPLR CIK4_MUSPF 206 206
PVKRLRYFDPLR CIK5_MOUSE 140 140
PAKRLRYFDPLR CIK5_RABIT 133 133
PGRRVRFFDPLR CIK6_HUMAN 70 70
PGRRVRFFDPLR CIK6_RAT 70 70
SHAKERCHANEL2 Length of motif = 11 Motif number = 2
Shaker voltage-gated K+ channel family motif II - 1
PCODE ST INT
YFFDRNRPSFD CIK1_HUMAN 80 2
YFFDRNRPSFD CIK1_MOUSE 80 2
YFFDRNRPSFD CIK1_RAT 80 2
YFFDRNRPSFD CIK2_HUMAN 76 2
YFFDRNRPSFD CIK2_XENLA 76 2
YFFDRNRPSFD CIK3_RAT 97 2
YFFDRNRPSFD CIK3_MOUSE 100 2
YFFDRNRPSFD CIK4_BOVIN 227 2
YFFDRNRPSFD CIK4_MOUSE 220 2
YFFDRNRPSFD CIK4_MUSPF 220 2
YFFDRNRPSFD CIK5_MOUSE 154 2
YFFDRNRPSFD CIK5_RABIT 147 2
YFFDRNRPSFD CIK6_HUMAN 84 2
YFFDRNRPSFD CIK6_RAT 84 2
SHAKERCHANEL3 Length of motif = 12 Motif number = 3
Shaker voltage-gated K+ channel family motif III - 1
PCODE ST INT
GEEAMEKFREDE CIK1_HUMAN 123 32
GEEAMEKFREDE CIK1_MOUSE 123 32
GEEAMEKFREDE CIK1_RAT 123 32
GEEAMEMFREDE CIK2_HUMAN 119 32
GEEAMEIFREDE CIK2_XENLA 119 32
GEEAMEKFREDE CIK3_RAT 140 32
GEEAMEKFREDE CIK3_MOUSE 143 32
GEEALLKFREDE CIK4_BOVIN 270 32
GEEALLKFREDE CIK4_MOUSE 263 32
GEEALLKFREDE CIK4_MUSPF 263 32
GDEAMERFREDE CIK5_MOUSE 197 32
GDEAMERFREDE CIK5_RABIT 190 32
GDEALAAFREDE CIK6_HUMAN 127 32
GDEALAAFREDE CIK6_RAT 127 32
SHAKERCHANEL4 Length of motif = 17 Motif number = 4
Shaker voltage-gated K+ channel family motif IV - 1
PCODE ST INT
FEYPESSGPARVIAIVS CIK1_HUMAN 157 22
FEYPESSGPARVIAIVS CIK1_MOUSE 157 22
FEYPESSGPARVIAIVS CIK1_RAT 157 22
FEYPESSGPARIIAIVS CIK2_HUMAN 153 22
FEYPESSGPARIIAIIS CIK2_XENLA 153 22
FEYPESSGPARGIAIVS CIK3_RAT 174 22
FEYPESSGPARGIAIVS CIK3_MOUSE 177 22
FEYPESSSPARGIAIVS CIK4_BOVIN 305 23
FEYPESSSPARGIAIVS CIK4_MOUSE 298 23
FEYPESSSPARGIAIVS CIK4_MUSPF 298 23
FEYPESSGSARAIAIVS CIK5_MOUSE 231 22
FEYPESSGSARAIAIVS CIK5_RABIT 224 22
FEYPESSGPARGIAIVS CIK6_HUMAN 164 25
FEYPESSGPARGIAIVS CIK6_RAT 164 25
SHAKERCHANEL5 Length of motif = 12 Motif number = 5
Shaker voltage-gated K+ channel family motif V - 1
PCODE ST INT
SIVIFCLETLPE CIK1_HUMAN 180 6
SIVIFCLETLPE CIK1_MOUSE 180 6
SIVIFCLETLPE CIK1_RAT 180 6
SIVSFCLETLPI CIK2_HUMAN 176 6
SIVSFCLETLPV CIK2_XENLA 176 6
SIVIFCLETLPE CIK3_RAT 197 6
SIVIFCLETLPE CIK3_MOUSE 200 6
SIVIFCLETLPE CIK4_BOVIN 328 6
SIVIFCLETLPE CIK4_MOUSE 321 6
SIVIFCLETLPE CIK4_MUSPF 321 6
SIITFCLETLPE CIK5_MOUSE 254 6
SIITFCLETLPE CIK5_RABIT 247 6
SIVIFCLETLPQ CIK6_HUMAN 187 6
SIVIFCLETLPQ CIK6_RAT 187 6
FINAL MOTIF SETS
SHAKERCHANEL1 Length of motif = 12 Motif number = 1
Shaker voltage-gated K+ channel family motif I - 3
PCODE ST INT
PKKRMRYFDPLR CIK1_HUMAN 66 66
PKKRMRYFDPLR CIK1_RAT 66 66
PKKRMRYFDPLR CIK1_MOUSE 66 66
PKRRMRYFDPLR CIK3_HUMAN 81 81
PKRRMRYFDPLR CIK3_MOUSE 86 86
PKRRMRYFDPLR CIK3_RAT 83 83
PKKRMRYFDPLR Q91781 63 63
PAKRGRYFDPLR Q9PWM8 221 221
PAKRGRYFDPLR Q9YGX8 221 221
PKRRMRYFDPVR Q28656 74 74
PKKRMRYFDPLR CIK2_HUMAN 62 62
PKKRMRYFDPLR Q9MYX3 62 62
PKKRMRYFDPLR CIK2_MOUSE 62 62
PKKRMRYFDPLR CIK2_XENLA 62 62
PEKRTQYFDPLR CIK4_BOVIN 213 213
PEKRTQYFDPLR CIK4_MOUSE 206 206
PEKRTQYFDPLR CIK4_MUSPF 206 206
PEKRTQYFDPLR CIK4_RAT 207 207
PAKRLRYFDPLR CIK5_MUSPF 138 138
PEKRTQYFDPLR CIK4_HUMAN 205 205
PAKRLRYFDPLR CIK5_RABIT 133 133
PVKRLRYFDPLR CIK5_MOUSE 140 140
PVKRLRYFDPLR Q9Z1R6 140 140
PAKRLPYFDPLR Q9TS07 134 134
PAKRLPYFDPLR CIK5_HUMAN 149 149
PAKRLHYFDPLR CIK5_RAT 140 140
PGRRVRFFDPLR Q61923 70 70
PKKRMRFFDPLR Q28293 62 62
PGRRVRFFDPLR CIK6_HUMAN 70 70
PGRRVRFFDPLR CIK6_RAT 70 70
PKKRMRYFDPLR Q9I830 61 61
PARRIRYFDPLR O61335 83 83
PARRLRYFDPLR CIK1_DROME 126 126
PARRLRYFDPLR CIK2_DROME 114 114
PARRLRYFDPLR CIK4_DROME 126 126
PRKRMRFFDPLR Q9I829 63 63
PQKRNRYYDPLR Q16968 95 95
REKRMQFFDSMR Q16322 115 115
PNKRNHYYDPLR Q26597 80 80
PKKRNRYYDPYR Q25376 69 69
RDKRMEFYDPLR Q9XXX0 95 95
SHAKERCHANEL2 Length of motif = 11 Motif number = 2
Shaker voltage-gated K+ channel family motif II - 3
PCODE ST INT
YFFDRNRPSFD CIK1_HUMAN 80 2
YFFDRNRPSFD CIK1_RAT 80 2
YFFDRNRPSFD CIK1_MOUSE 80 2
YFFDRNRPSFD CIK3_HUMAN 95 2
YFFDRNRPSFD CIK3_MOUSE 100 2
YFFDRNRPSFD CIK3_RAT 97 2
YFFDRNRPSFD Q91781 77 2
YFFDRNRPSFD Q9PWM8 235 2
YFFDRNRPSFD Q9YGX8 235 2
YFFDRNRPSFD Q28656 88 2
YFFDRNRPSFD CIK2_HUMAN 76 2
YFFDRNRPSFD Q9MYX3 76 2
YFFDRNRPSFD CIK2_MOUSE 76 2
YFFDRNRPSFD CIK2_XENLA 76 2
YFFDRNRPSFD CIK4_BOVIN 227 2
YFFDRNRPSFD CIK4_MOUSE 220 2
YFFDRNRPSFD CIK4_MUSPF 220 2
YFFDRNRPSFD CIK4_RAT 221 2
YFFDRNRPSFD CIK5_MUSPF 152 2
YFFDRNRPSFD CIK4_HUMAN 219 2
YFFDRNRPSFD CIK5_RABIT 147 2
YFFDRNRPSFD CIK5_MOUSE 154 2
YFFDRNRPSFD Q9Z1R6 154 2
YFFDRNRPSFD Q9TS07 148 2
YFFDRNRPSFD CIK5_HUMAN 163 2
YFFDRNRPSFD CIK5_RAT 154 2
YFFDRNRPSFD Q61923 84 2
IFFVRNRPSFD Q28293 76 2
YFFDRNRPSFD CIK6_HUMAN 84 2
YFFDRNRPSFD CIK6_RAT 84 2
YFFDRSRTSFD Q9I830 75 2
YFFDRNRPSFD O61335 97 2
YFFDRSRPSFD CIK1_DROME 140 2
YFFDRSRPSFD CIK2_DROME 128 2
YFFDRSRPSFD CIK4_DROME 140 2
YFFDRNRPSFD Q9I829 77 2
YFFDRNRPSFD Q16968 109 2
YFFDRNRPSFD Q16322 129 2
YFFDRNRSSFD Q26597 94 2
YFFDGNRPSFD Q25376 83 2
YFFDRNRPSFD Q9XXX0 109 2
SHAKERCHANEL3 Length of motif = 12 Motif number = 3
Shaker voltage-gated K+ channel family motif III - 3
PCODE ST INT
GEEAMEKFREDE CIK1_HUMAN 123 32
GEEAMEKFREDE CIK1_RAT 123 32
GEEAMEKFREDE CIK1_MOUSE 123 32
GEEAMEKFREDE CIK3_HUMAN 138 32
GEEAMEKFREDE CIK3_MOUSE 143 32
GEEAMEKFREDE CIK3_RAT 140 32
GEEAMEKFREDE Q91781 120 32
GEEAMLKFREDE Q9PWM8 278 32
GEEAMLKFREDE Q9YGX8 278 32
GEEAMEKFREDE Q28656 131 32
GEEAMEMFREDE CIK2_HUMAN 119 32
GEEAMEMFREDE Q9MYX3 119 32
GEEAMEMFREDE CIK2_MOUSE 119 32
GEEAMEIFREDE CIK2_XENLA 119 32
GEEALLKFREDE CIK4_BOVIN 270 32
GEEALLKFREDE CIK4_MOUSE 263 32
GEEALLKFREDE CIK4_MUSPF 263 32
GEEALLKFREDE CIK4_RAT 264 32
GDEAMERFREDE CIK5_MUSPF 195 32
GEEALLKFREDE CIK4_HUMAN 262 32
GDEAMERFREDE CIK5_RABIT 190 32
GDEAMERFREDE CIK5_MOUSE 197 32
GDEAMERFREDE Q9Z1R6 197 32
GEEAMERFREDE Q9TS07 191 32
GDEAMERFREDE CIK5_HUMAN 206 32
GDEAMERFREDE CIK5_RAT 197 32
GEEALAAFREDE Q61923 127 32
GEEAMEMFREDE Q28293 119 32
GDEALAAFREDE CIK6_HUMAN 127 32
GDEALAAFREDE CIK6_RAT 127 32
GDEAIELFREDE Q9I830 118 32
GEVAINKFREDE O61335 140 32
GDQAINKFREDE CIK1_DROME 183 32
GDQAINKFREDE CIK2_DROME 171 32
GDQAINKFREDE CIK4_DROME 183 32
EEEAIDMFKEDE Q9I829 120 32
GENAFERYREDE Q16968 152 32
GSEAMDQFREDE Q16322 172 32
GEEALAKYREEE Q26597 137 32
GEEVIDKYRAEE Q25376 126 32
GEMALEKYKADE Q9XXX0 152 32
SHAKERCHANEL4 Length of motif = 17 Motif number = 4
Shaker voltage-gated K+ channel family motif IV - 3
PCODE ST INT
FEYPESSGPARVIAIVS CIK1_HUMAN 157 22
FEYPESSGPARVIAIVS CIK1_RAT 157 22
FEYPESSGPARVIAIVS CIK1_MOUSE 157 22
FEYPESSGPARGIAIVS CIK3_HUMAN 172 22
FEYPESSGPARGIAIVS CIK3_MOUSE 177 22
FEYPESSGPARGIAIVS CIK3_RAT 174 22
FEFPESSGPARIIAIIS Q91781 154 22
FEYPESSSPARGIAIVS Q9PWM8 313 23
FEYPESSSPARGIAIVS Q9YGX8 313 23
FEYPESSGPARGIAIVS Q28656 165 22
FEYPESSGPARIIAIVS CIK2_HUMAN 153 22
FEYPESSGPARIIAIVS Q9MYX3 153 22
FEYPESSGPARIIAIVS CIK2_MOUSE 153 22
FEYPESSGPARIIAIIS CIK2_XENLA 153 22
FEYPESSSPARGIAIVS CIK4_BOVIN 305 23
FEYPESSSPARGIAIVS CIK4_MOUSE 298 23
FEYPESSSPARGIAIVS CIK4_MUSPF 298 23
FEYPESSSPARGIAIVS CIK4_RAT 299 23
FEYPESSGSARGIAIVS CIK5_MUSPF 229 22
FEYPESSDPARGIAIVS CIK4_HUMAN 297 23
FEYPESSGSARAIAIVS CIK5_RABIT 224 22
FEYPESSGSARAIAIVS CIK5_MOUSE 231 22
FEYPESSGSARAIAIVS Q9Z1R6 231 22
FEYPESSGSARAIAIVS Q9TS07 225 22
FEYPESSGSARAIAIVS CIK5_HUMAN 240 22
FEYPESSGSARAIAIVS CIK5_RAT 231 22
FEYPESSGPARGIAIVS Q61923 164 25
FEYPESSGPARIIAIVS Q28293 153 22
FEYPESSGPARGIAIVS CIK6_HUMAN 164 25
FEYPESSGPARGIAIVS CIK6_RAT 164 25
FEYPESSGPARIIAIIS Q9I830 152 22
FEYPESSQNARVVAIIS O61335 174 22
FEYPESSQAARVVAIIS CIK1_DROME 217 22
FEYPESSQAARVVAIIS CIK2_DROME 205 22
FEYPESSQAARVVAIIS CIK4_DROME 217 22
FEYPESSGPARMIAVVS Q9I829 154 22
FEYPESSAAARLCAIFS Q16968 186 22
FEYPESSSAARAVAVVS Q16322 206 22
FEYPESSLAARILAIGS Q26597 171 22
VEHPESSTPARVIAIVS Q25376 160 22
FEYPESSAAARGIAIMS Q9XXX0 186 22
SHAKERCHANEL5 Length of motif = 12 Motif number = 5
Shaker voltage-gated K+ channel family motif V - 3
PCODE ST INT
SIVIFCLETLPE CIK1_HUMAN 180 6
SIVIFCLETLPE CIK1_RAT 180 6
SIVIFCLETLPE CIK1_MOUSE 180 6
SIVIFCLETLPE CIK3_HUMAN 195 6
SIVIFCLETLPE CIK3_MOUSE 200 6
SIVIFCLETLPE CIK3_RAT 197 6
SIVIFCLETLPE Q91781 177 6
SIVIFCLETLPE Q9PWM8 336 6
SIVIFCLETLPE Q9YGX8 336 6
SIVIFCLETLPE Q28656 188 6
SIVSFCLETLPI CIK2_HUMAN 176 6
SIVSFCLETLPI Q9MYX3 176 6
SIVSFCLETLPI CIK2_MOUSE 176 6
SIVSFCLETLPV CIK2_XENLA 176 6
SIVIFCLETLPE CIK4_BOVIN 328 6
SIVIFCLETLPE CIK4_MOUSE 321 6
SIVIFCLETLPE CIK4_MUSPF 321 6
SIVIFCLETLPE CIK4_RAT 322 6
SIITFCLETLPE CIK5_MUSPF 252 6
SIVIFCLETLPE CIK4_HUMAN 320 6
SIITFCLETLPE CIK5_RABIT 247 6
SIITFCLETLPE CIK5_MOUSE 254 6
SIITFCLETLPE Q9Z1R6 254 6
SIITFCLETLPE Q9TS07 248 6
SIITFCLETLPE CIK5_HUMAN 263 6
SIITFCLETLPE CIK5_RAT 254 6
SIVIFCLETLPQ Q61923 187 6
SIVSFCLETLPI Q28293 176 6
SIVIFCLETLPQ CIK6_HUMAN 187 6
SIVIFCLETLPQ CIK6_RAT 187 6
SIVSFCLETLPI Q9I830 175 6
SIVIFCLETLPE O61335 197 6
SIVIFCLETLPE CIK1_DROME 240 6
SIVIFCLETLPE CIK2_DROME 228 6
SIVIFCLETLPE CIK4_DROME 240 6
SIVIFCLETLPQ Q9I829 177 6
SIVIFCLETLPQ Q16968 209 6
SITIFCLETLPE Q16322 229 6
SIIIFCLETLPH Q26597 194 6
SIVTFCLETLPE Q25376 183 6
SIISFCLETLPA Q9XXX0 209 6
User query: Display/Full Code "SHAKERCHANEL"