WORKLIST ENTRIES (1):

RIBOSOMALS19 View alignment View Structure    Ribosomal protein S19 family signature
 Type of fingerprint: COMPOUND with 3  elements
Links:
   PRINTS; PR00681 RIBOSOMALS1; PR00395 RIBOSOMALS2; PR00971 RIBOSOMALS10
   PRINTS; PR01034 RIBOSOMALS12; PR00972 RIBSOMALS12E; PR00973 RIBOSOMALS17
   PRINTS; PR00974 RIBOSOMALS18; PR00976 RIBOSOMALS21
   INTERPRO; IPR002222
   PROSITE; PS00323 RIBOSOMAL_S19
   PFAM; PF00203 Ribosomal_S19
   PROTOMAP; 198

 Creation date 05-OCT-1998; UPDATE 23-JUN-1999

   1. KURLAND, C.G., JORGENSEN, F., RICHTER, A., EHRENBERG, M., BILGIN, N. 
   AND ROJAS, A.M.
   Through the accuracy window.
   IN THE RIBOSOME: STRUCTURE, FUNCTION AND EVOLUTION (W.E.HILL, A.DAHLBERG,
   R.A.GARRETT, P.B.MOORE, D.SCHLESSINGER AND J.R.WARNER, EDS.)
   PP.513-526 (AMERICAN SOCIETY FOR MICROBIOLOGY, WASHINGTON DC) (1990).

   2. MUELLER, F. AND BRIMACOMBE, R.
   A new model for the three-dimensional folding of Escherichia coli
   16S ribosomal RNA. II. The RNA-protein interaction data.
   J.MOL.BIOL. 271(4) 545-565 (1997).

   3. AGAFONOV, D.E., KOLB, V.A. AND SPIRIN, A.S.
   Proteins on ribosome surface: measurements of protein exposure by
   hot tritium bombardment technique.
   PROC.NATL.ACAD.SCI.U.S.A. 94(24) 12892-7 (1997).

   4. KITAGAWA, M., TAKASAWA, S., KIKUCHI, N., ITOH, T,. TERAOKA, H., 
   YAMAMOTO, H. AND OKAMOTO, H.
   Rig encodes ribosomal protein S15. The primary structure of mammalian 
   ribosomal protein S15.
   FEBS LETT. 283(2) 210 (1991).

   5. OTAKA, E., SUZUKI, K. AND HASHIMOTO, T.
   Examination of protein sequence homologies. VII. The complementary molecular
   coevolution of ribosomal proteins equivalent to Escherichia coli L7/L12 and 
   L10.
   PROTEIN SEQ.DATA ANAL. 3 11-19 (1990).

   Ribosomes are ribonucleoprotein particles that are the site of protein
   synthesis. The structure of the ribosome is well conserved across the
   prokaryotic and eukaryotic lineages, reflecting the early origin of their
   essential function. They comprise two subunits, which can dissociate on 
   heating. In prokaryotes, the small subunit contains a single large RNA 
   moeity denoted, according to its sedimentation coefficient, 16S rRNA, and 21 
   different ribosomal proteins, designated S1-S21. Eukaryotic small ribosomal
   subunits contain 33 proteins, many of which are similar to those found
   in prokaryotes. 
  
   There are two major tRNA binding sites on the ribosome, termed the A site, 
   where incoming aminoacyl-tRNA is bound, and the P site (for peptidyl tRNA), 
   where new peptide bonds are formed. The ribosomal proteins catalyse ribosome 
   assembly and stabilise the rRNA, tuning the structure of the ribosome for 
   optimal function [1]. Evidence suggests that, in prokaryotes, the peptidyl
   transferase reaction is performed by the large subunit 23S rRNA, whereas
   proteins probably have a greater role in eukaryotic ribosomes. Most of the
   proteins lie close to, or on the surface of, the 30S subunit, arranged
   peripherally around the rRNA [2]. The small subunit ribosomal proteins can
   be categorised as primary binding proteins, which bind directly and
   independently to 16S rRNA; secondary binding proteins, which display no
   specific affinity for 16S rRNA, but its assembly is contingent upon the
   presence of one or more primary binding proteins; and tertiary binding
   proteins, which require the presence of one or more secondary binding
   proteins and sometimes other tertiary binding proteins.
   
   The small ribosomal subunit protein S19 contains 88-144 amino acid residues.
   In Escherichia coli, S19 is known to form a complex with S13 that binds 
   strongly to 16S ribosomal RNA. Experimental evidence [3] has revealed that 
   S19 is moderately exposed on the ribosomal surface, and is designated 
   a secondary rRNA binding protein. S19 belongs to a family of ribosomal 
   proteins [3,4] that includes: eubacterial S19; algal and plant chloroplast 
   S19; cyanelle S19; archaebacterial S19; plant mitochondrial S19; and 
   eukaryotic S15 ('rig' protein).
  
   RIBOSOMALS19 is a 3-element fingerprint that provides a signature for S19 
   ribosomal proteins. The fingerprint was derived from an initial alignment 
   of 29 sequences: the motifs were drawn from short conserved regions spanning
   the full alignment length - motifs 3 and 4 span the conserved C-terminal
   region encoded by PROSITE pattern RIBOSOMAL_S19 (PS00323). Two iterations 
   on OWL30.2 were required to reach convergence, at which point a true set
   comprising 66 sequences was identified. A single partial match was also
   found, RS19_YERPS, a fragment that lacks the portion of sequence bearing
   motif 3.
  
   An update on SPTR37_9f identified a true set of 62 sequences, and 1
   partial match.

  SUMMARY INFORMATION
     62 codes involving  3 elements
      1 codes involving  2 elements

   COMPOSITE FINGERPRINT INDEX
  
    3|  62   62   62  
    2|   1    1    0  
   --+----------------
     |   1    2    3  

True positives..
 RS19_SYNP6     RR19_GUITH     RR19_CHLVU     RR19_CYAPA     
 RS19_AQUAE     RS19_MYCCA     RR19_PEA       RR19_TOBAC     
 RR19_MARPO     RR19_SOYBN     RS19_ECOLI     RS19_SYNY3     
 Q50265         RR19_SPIOL     RS19_BACST     RS19_MYCPN     
 Q36570         RR19_PORPU     O52336         RS19_HAEIN     
 RR19_SECCE     RS19_MYCGE     RR19_ORYSA     RR19_MAIZE     
 O59422         RR19_EPIVI     RS19_BACSU     RS19_MYCTU     
 RS19_MYCLE     RS19_HELPY     RS19_BORBU     RR19_ODOSI     
 RS19_THEMA     Q36603         RR19_PICAB     RR19_PINTH     
 RR19_EUGGR     RS15_HUMAN     RS19_METJA     YN8L_YEAST     
 RS15_XENLA     RS15_XIPMA     O28358         RT19_MARPO     
 RS19_TREPA     RT19_PROWI     RS15_ARATH     O65059         
 O21248         RS19_METTH     RS15_YEAST     O84529         
 RS15_ORYSA     RT19_ARATH     RT19_PETHY     RS15_PODAN     
 RR19_ASTLO     P92813         RS19_HALHA     RS19_HALMA     
 RT19_PLASU     Q23889         
Subfamily:  Codes involving 2 elements
 Subfamily True positives..
 O59084         


  PROTEIN TITLES
   RS19_SYNP6       30S RIBOSOMAL PROTEIN S19 - SYNECHOCOCCUS SP. (STRAIN PCC 63
   RR19_GUITH       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - GUILLARDIA THETA (CR
   RR19_CHLVU       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - CHLORELLA VULGARIS.
   RR19_CYAPA       CYANELLE 30S RIBOSOMAL PROTEIN S19 - CYANOPHORA PARADOXA.
   RS19_AQUAE       30S RIBOSOMAL PROTEIN S19 - AQUIFEX AEOLICUS.
   RS19_MYCCA       30S RIBOSOMAL PROTEIN S19 - MYCOPLASMA CAPRICOLUM.
   RR19_PEA         CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PISUM SATIVUM (GARDE
   RR19_TOBAC       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - NICOTIANA TABACUM (C
   RR19_MARPO       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - MARCHANTIA POLYMORPH
   RR19_SOYBN       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - GLYCINE MAX (SOYBEAN
   RS19_ECOLI       30S RIBOSOMAL PROTEIN S19 - ESCHERICHIA COLI.
   RS19_SYNY3       30S RIBOSOMAL PROTEIN S19 - SYNECHOCYSTIS SP. (STRAIN PCC 68
   Q50265           RPL23 - PHYTOPLASMA SP.
   RR19_SPIOL       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 (CS-S23) - SPINACIA OL
   RS19_BACST       30S RIBOSOMAL PROTEIN S19 (BS19) - BACILLUS STEAROTHERMOPHIL
   RS19_MYCPN       30S RIBOSOMAL PROTEIN S19 - MYCOPLASMA PNEUMONIAE.
   Q36570           RPS19 PROTEIN - NICOTIANA BIGELOVII (BIGELOV'S TOBACCO).
   RR19_PORPU       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PORPHYRA PURPUREA.
   O52336           RIBOSOMAL PROTEIN S19 - MYCOPLASMA GALLISEPTICUM.
   RS19_HAEIN       30S RIBOSOMAL PROTEIN S19 - HAEMOPHILUS INFLUENZAE, AND ACTI
   RR19_SECCE       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - SECALE CEREALE (RYE)
   RS19_MYCGE       30S RIBOSOMAL PROTEIN S19 - MYCOPLASMA GENITALIUM.
   RR19_ORYSA       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ORYZA SATIVA (RICE).
   RR19_MAIZE       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ZEA MAYS (MAIZE).
   O59422           132AA LONG HYPOTHETICAL 30S RIBOSOMAL PROTEIN S19 - PYROCOCC
   RR19_EPIVI       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - EPIFAGUS VIRGINIANA 
   RS19_BACSU       30S RIBOSOMAL PROTEIN S19 (BS19) - BACILLUS SUBTILIS.
   RS19_MYCTU       30S RIBOSOMAL PROTEIN S19 - MYCOBACTERIUM TUBERCULOSIS, AND 
   RS19_MYCLE       30S RIBOSOMAL PROTEIN S19 - MYCOBACTERIUM LEPRAE.
   RS19_HELPY       30S RIBOSOMAL PROTEIN S19 - HELICOBACTER PYLORI (CAMPYLOBACT
   RS19_BORBU       30S RIBOSOMAL PROTEIN S19 - BORRELIA BURGDORFERI (LYME DISEA
   RR19_ODOSI       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ODONTELLA SINENSIS.
   RS19_THEMA       30S RIBOSOMAL PROTEIN S19 - THERMOTOGA MARITIMA.
   Q36603           RPS19 PROTEIN - NICOTIANA TABACUM (COMMON TOBACCO).
   RR19_PICAB       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PICEA ABIES (NORWAY 
   RR19_PINTH       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PINUS THUNBERGII (GR
   RR19_EUGGR       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - EUGLENA GRACILIS.
   RS15_HUMAN       40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) - HOMO SAPIENS (HUMA
   RS19_METJA       30S RIBOSOMAL PROTEIN S19P - METHANOCOCCUS JANNASCHII.
   YN8L_YEAST       PUTATIVE 40S RIBOSOMAL PROTEIN YNR037C - SACCHAROMYCES CEREV
   RS15_XENLA       40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) - XENOPUS LAEVIS (AF
   RS15_XIPMA       40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) - XIPHOPHORUS MACULA
   O28358           SSU RIBOSOMAL PROTEIN S19P (RPS19P) - ARCHAEOGLOBUS FULGIDUS
   RT19_MARPO       MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - MARCHANTIA POLYMORPHA 
   RS19_TREPA       30S RIBOSOMAL PROTEIN S19 - TREPONEMA PALLIDUM.
   RT19_PROWI       MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - PROTOTHECA WICKERHAMII
   RS15_ARATH       40S RIBOSOMAL PROTEIN S15 - ARABIDOPSIS THALIANA (MOUSE-EAR 
   O65059           PROBABLE 40S RIBOSOMAL PROTEIN S15 - PICEA MARIANA (BLACK SP
   O21248           RIBOSOMAL PROTEIN S19 - RECLINOMONAS AMERICANA.
   RS19_METTH       30S RIBOSOMAL PROTEIN S19P - METHANOBACTERIUM THERMOAUTOTROP
   RS15_YEAST       40S RIBOSOMAL PROTEIN S15 (S21) (YS21) (RP52) (RIG PROTEIN) 
   O84529           S19 RIBOSOMAL PROTEIN - CHLAMYDIA TRACHOMATIS.
   RS15_ORYSA       40S RIBOSOMAL PROTEIN S15 - ORYZA SATIVA (RICE).
   RT19_ARATH       40S RIBOSOMAL PROTEIN S19, MITOCHONDRIAL PRECURSOR - ARABIDO
   RT19_PETHY       MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - PETUNIA HYBRIDA (PETUN
   RS15_PODAN       40S RIBOSOMAL PROTEIN S15 (S12) - PODOSPORA ANSERINA.
   RR19_ASTLO       CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ASTASIA LONGA (EUGLE
   P92813           RIBOSOMAL PROTEIN S19 - ORYZA SATIVA (RICE).
   RS19_HALHA       30S RIBOSOMAL PROTEIN S19 (HHAS19) - HALOBACTERIUM HALOBIUM.
   RS19_HALMA       30S RIBOSOMAL PROTEIN S19 (HMAS19) (HS18) - HALOARCULA MARIS
   RT19_PLASU       MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - PLATYMONAS SUBCORDIFOR
   Q23889           RIBOSOMAL PROTEIN S19 - DICTYOSTELIUM DISCOIDEUM (SLIME MOLD
 
   O59084           639AA LONG HYPOTHETICAL PROTEIN - PYROCOCCUS HORIKOSHII.

SCAN HISTORY OWL30_2 2 300 NSINGLE SPTR37_9f 1 300 NSINGLE INITIAL MOTIF SETS RIBOSOMALS191 Length of motif = 20 Motif number = 1 Ribosomal protein S19 family motif I - 1 PCODE ST INT TKSRSSTVFPSMVGHNISVY RR19_ASTLO 33 33 TWSRASTILPMMVGHTIAVH RR19_CYAPA 33 33 TWSRASTIVPTMIGHTIAVH RR19_MARPO 32 32 TWSRRSTIFPNMIGLTIAVH RS19_ECOLI 32 32 TWSRRSTIFPQFVGHTIAVY RS19_BACST 32 32 TWSRRSTIFPEFIGKTFGVY RS19_MYCCA 30 30 TWSRASMIIPKWVGHGIAVY RS19_THEMA 33 33 TWSRASTIIPIMIGHMISIH RR19_EPIVI 35 35 TWSRKSTIIPIMIGHTIAIH RR19_PEA 32 32 TWSRASSILPAMVGHTIAIH RR19_MAIZE 31 31 TWSRSCTIIPIMIGNTIGVY RR19_EUGGR 33 33 IWSRRSTILPEYVDSAVRIY RT19_ARATH 158 158 IWSRRSSILPEFVDCFVRIY RT19_PETHY 31 31 IWSRRSCILPQFVGCYAQIY RT19_MARPO 25 25 IWSRRSAILPQFVGKTVSIH RT19_PROWI 24 24 THLRDMPVLPEFVGLTFAVY RS19_HALHA 48 48 THLRDMIILPEMVGSMVGVY RS15_HUMAN 77 77 THLRNMIIVPEMIGSIIGVY RS15_ARATH 85 85 THLRNMIIVPEMIGSIVGVY RS15_ORYSA 85 85 THLRDMIVVPEMIGSVVGIY RS15_PODAN 85 85 THMRNMIIVPEMIGSVVGIY RS15_YEAST 78 78 THLRDMPVVPEMVGLTLAVH RS19_HALMA 73 73 TNARAATILPQFVGLKFQIH YN8L_YEAST 35 35 TWSRRSVILPQFIGLSFNIY S78142 33 33 THCRDMVVLPEMVGKVVFVH H69489 66 66 TYSRATTIIPEFVGHTIAVH AE0006697 125 125 THLRDMVILPEMVGSMVGVY RS15_XIPMA 78 78 IYSRRSVVSPKFIGREVEIY RT19_PLASU 28 28 RIBOSOMALS192 Length of motif = 13 Motif number = 2 Ribosomal protein S19 family motif II - 1 PCODE ST INT NGKNYVPFLILNQ RR19_ASTLO 53 0 NGRQHLPVFITDQ RR19_CYAPA 53 0 NGQEHLPIYITDR RR19_MARPO 52 0 NGRQHVPVFVTDE RS19_ECOLI 52 0 DGRRHVPVYITED RS19_BACST 52 0 NGKEFIPVYITED RS19_MYCCA 50 0 NGMKHIPVYITEN RS19_THEMA 53 0 NGKEHLPIYITDH RR19_EPIVI 55 0 NGKEHLPVYITDR RR19_PEA 52 0 NGKEHIPIYITNP RR19_MAIZE 51 0 NGKEHIPVLVSDQ RR19_EUGGR 53 0 NGKTHVRCKITEG RT19_ARATH 178 0 NGKTFVRCKITEG RT19_PETHY 51 0 NGKGFVGLKITEE RT19_MARPO 45 0 NGRIFIPCKISPE RT19_PROWI 44 0 TGQEFERVEVQPE RS19_HALHA 68 0 NGKTFNQVEIKPE RS15_HUMAN 97 0 NGKTFNQVEIKPE RS15_ARATH 105 0 NGKTFNQVEIKPE RS15_ORYSA 105 0 SGKEFNQVEIKPE RS15_PODAN 105 0 NGKAFNQVEIRPE RS15_YEAST 98 0 DGQNFERVKVEPE RS19_HALMA 93 0 NGKEYVPIEISED YN8L_YEAST 55 0 NGNKWVSVTVTED S78142 53 0 NGKEFVRVEIKPE H69489 86 0 NGKTFVPVYITQD AE0006697 145 0 NGKTFNQVEIKPE RS15_XIPMA 98 0 NGHKWITIKIKED RT19_PLASU 48 0 RIBOSOMALS193 Length of motif = 16 Motif number = 3 Ribosomal protein S19 family motif III - 1 PCODE ST INT QMISSKLGEFSRTRNF RR19_ASTLO 65 -1 QMVGHKLGEFAPTRTF RR19_CYAPA 65 -1 RMVGHKLGEFAPTRTF RR19_MARPO 64 -1 EMVGHKLGEFAPTRTY RS19_ECOLI 64 -1 DMVGHKLGEFAPTATF RS19_BACST 64 -1 DMVGNKLGEFAPTRKF RS19_MYCCA 62 -1 NMIGHRLGEFAPTRRF RS19_THEMA 65 -1 HMVGHKLGEFVPTLNF RR19_EPIVI 67 -1 RMVGHKLGEFSPTLNF RR19_PEA 64 -1 PMVGRKLGEFVPTRHF RR19_MAIZE 63 -1 QMIGHKLGEFVQTRNY RR19_EUGGR 65 -1 GKVGHKFGEFAFTRKV RT19_ARATH 190 -1 GKVGHKFGEFAFTRKR RT19_PETHY 63 -1 EMVGHKFGEFASTRKT RT19_MARPO 57 -1 EMIGHKFGEFAVTRKK RT19_PROWI 56 -1 EMIGHYLGEFQLTRSS RS19_HALHA 80 -1 EMIGHYLGEFSITYKP RS15_HUMAN 109 -1 EMIGHYLAEFSISYKP RS15_ARATH 117 -1 EMIGHYLAEFSISYKP RS15_ORYSA 117 -1 EMVGHYLGEFSISYKP RS15_PODAN 117 -1 EMLGHYLGEFSITYTP RS15_YEAST 110 -1 EMLGHYLGEFQLTRSS RS19_HALMA 105 -1 DMVGHKLGEFAPTRKR YN8L_YEAST 67 -1 DMIGHKLGEFSLTRKA S78142 65 -1 EMIGHRLGEFALTRRF H69489 98 -1 DMVGHKLGEFAPTRTF AE0006697 157 -1 EMCGHYLGEFSITYKP RS15_XIPMA 110 -1 DMIGHKFGEFAFTRKA RT19_PLASU 60 -1 FINAL MOTIF SETS RIBOSOMALS191 Length of motif = 20 Motif number = 1 Ribosomal protein S19 family motif I - 1 PCODE ST INT TWSRASTILPQMIGHTIAVH RS19_SYNP6 33 33 TWSRSSTILPNMVGATIAVY RR19_GUITH 33 33 TWSRSSTIVPLMIGHTIAVH RR19_CHLVU 33 33 TWSRASTILPMMVGHTIAVH RR19_CYAPA 33 33 TYSRATTIIPEFVGHTIAVH RS19_AQUAE 125 125 TWSRRSTIFPEFIGKTFGVY RS19_MYCCA 30 30 TWSRKSTIIPIMIGHTIAIH RR19_PEA 32 32 TWSRASTIIPTMIGHTIAIH RR19_TOBAC 32 32 TWSRASTIVPTMIGHTIAVH RR19_MARPO 32 32 TWSRASTIIPTMIGHTIAIH RR19_SOYBN 32 32 TWSRRSTIFPNMIGLTIAVH RS19_ECOLI 32 32 TWSRASTILPQMVGHTIAVH RS19_SYNY3 33 33 TWSRSSTITPIFVGHKIAVY Q50265 33 33 TWSRASTIIPTMIGHTIAIH RR19_SPIOL 32 32 TWSRRSTIFPQFVGHTIAVY RS19_BACST 32 32 TWSRRSTIFPEFVGNTFAVH RS19_MYCPN 33 33 TWSRASTIIPTXIGHTIAIH Q36570 33 33 TWSRASTIIPDMIGHTIAVY RR19_PORPU 33 33 TWSRRSTIFPDFVGHTFAVH O52336 33 33 TWSRRSMIIPSMIGLTIAVH RS19_HAEIN 32 32 TWSRASSILPTMVGHTIAIH RR19_SECCE 31 31 TWSRRSTIFPEFVGNTFSVH RS19_MYCGE 33 33 TWSRASSILPAMVGHTIAIH RR19_ORYSA 31 31 TWSRASSILPAMVGHTIAIH RR19_MAIZE 31 31 THCRDMIILPEMVGLTIYVH O59422 65 65 TWSRASTIIPIMIGHMISIH RR19_EPIVI 35 35 TWSRRSTIFPQFIGHTIAVY RS19_BACSU 32 32 TWSRRSTIIPDFIGHTFAVH RS19_MYCTU 33 33 TWSRRSTIIPDFIGHTFAVH RS19_MYCLE 33 33 TWSRRSTILPEMIGFTYNVH RS19_HELPY 33 33 TYSRSSTIIPEMVSLTISVY RS19_BORBU 33 33 TWSRTSTILPTMVGHTIAVY RR19_ODOSI 33 33 TWSRASMIIPKWVGHGIAVY RS19_THEMA 33 33 TWSRASTIIPTMIGHTIAIH Q36603 33 33 TWSRASVIVPAMIGHTIAVH RR19_PICAB 33 33 TWSRASVIVPAMIGHTIAVH RR19_PINTH 33 33 TWSRSCTIIPIMIGNTIGVY RR19_EUGGR 33 33 THLRDMIILPEMVGSMVGVY RS15_HUMAN 77 77 THCRDFVITPDMVGLTFGVY RS19_METJA 85 85 TNARAATILPQFVGLKFQIH YN8L_YEAST 35 35 THLRDMIILPEMVGSMVGVY RS15_XENLA 77 77 THLRDMVILPEMVGSMVGVY RS15_XIPMA 78 78 THCRDMVVLPEMVGKVVFVH O28358 66 66 IWSRRSCILPQFVGCYAQIY RT19_MARPO 25 25 SYSRCSTIIPEMVGFTISVH RS19_TREPA 36 36 IWSRRSAILPQFVGKTVSIH RT19_PROWI 24 24 THLRNMIIVPEMIGSIIGVY RS15_ARATH 85 85 THLRNMIIVPEMIGSIIGVY O65059 84 84 TWSRRSVILPQFIGLSFNIY O21248 33 33 THCRDMIVLPEMVGMTFGIH RS19_METTH 69 69 THMRNMIIVPEMIGSVVGIY RS15_YEAST 78 78 TWSRRSMITPEMIGHTFEVH O84529 33 33 THLRNMIIVPEMIGSIVGVY RS15_ORYSA 85 85 IWSRRSTILPEYVDSAVRIY RT19_ARATH 158 158 IWSRRSSILPEFVDCFVRIY RT19_PETHY 31 31 THLRDMIVVPEMIGSVVGIY RS15_PODAN 85 85 TKSRSSTVFPSMVGHNISVY RR19_ASTLO 33 33 IWSRRSSISPEFVDCSVLIY P92813 31 31 THLRDMPVLPEFVGLTFAVY RS19_HALHA 73 73 THLRDMPVVPEMVGLTLAVH RS19_HALMA 73 73 IYSRRSVVSPKFIGREVEIY RT19_PLASU 28 28 TTERSSVIVPYYLTKTIYVY Q23889 28 28 RIBOSOMALS192 Length of motif = 13 Motif number = 2 Ribosomal protein S19 family motif II - 1 PCODE ST INT NGRQHVPVYVTEQ RS19_SYNP6 53 0 NGKQHVPVYISDQ RR19_GUITH 53 0 NGREHIPVFITDQ RR19_CHLVU 53 0 NGRQHLPVFITDQ RR19_CYAPA 53 0 NGKTFVPVYITQD RS19_AQUAE 145 0 NGKEFIPVYITED RS19_MYCCA 50 0 NGKEHLPVYITDR RR19_PEA 52 0 NGKEHLPIYITDS RR19_TOBAC 52 0 NGQEHLPIYITDR RR19_MARPO 52 0 NGKEHLPIYITDR RR19_SOYBN 52 0 NGRQHVPVFVTDE RS19_ECOLI 52 0 NGRQHVPVFVSEQ RS19_SYNY3 53 0 NGREHIPVYITEN Q50265 53 0 NGREHLPIYITDR RR19_SPIOL 52 0 DGRRHVPVYITED RS19_BACST 52 0 NGKTFINVYVTDD RS19_MYCPN 53 0 NGKEHLPIYITXS Q36570 53 0 NGKQHFPVFVSDQ RR19_PORPU 53 0 NGKKFINVYVTED O52336 53 0 NGRQHVPVYVSDE RS19_HAEIN 52 0 NGKEHIPIYITNP RR19_SECCE 51 0 NGKTFINVYVTDD RS19_MYCGE 53 0 NGKEHIPIYITNP RR19_ORYSA 51 0 NGKEHIPIYITNP RR19_MAIZE 51 0 NGKEFVPVEIKPE O59422 85 0 NGKEHLPIYITDH RR19_EPIVI 55 0 DGRKHVPVFISED RS19_BACSU 52 0 DGRKHVPVFVTES RS19_MYCTU 53 0 DGRKHVPVFVTEA RS19_MYCLE 53 0 NGRVFIPVYITEN RS19_HELPY 53 0 NGKTFIPIYITED RS19_BORBU 53 0 NGRQHVPIFISDQ RR19_ODOSI 53 0 NGMKHIPVYITEN RS19_THEMA 53 0 XGKEHLPIYITDS Q36603 53 0 NGREHLPIYVTDR RR19_PICAB 53 0 NGREHLPIYVTDR RR19_PINTH 53 0 NGKEHIPVLVSDQ RR19_EUGGR 53 0 NGKTFNQVEIKPE RS15_HUMAN 97 0 NGKEFVEVKVTPE RS19_METJA 105 0 NGKEYVPIEISED YN8L_YEAST 55 0 NGKAFNQVEIKPE RS15_XENLA 97 0 NGKTFNQVEIKPE RS15_XIPMA 98 0 NGKEFVRVEIKPE O28358 86 0 NGKGFVGLKITEE RT19_MARPO 45 0 NGKSWIPVYITEE RS19_TREPA 56 0 NGRIFIPCKISPE RT19_PROWI 44 0 NGKTFNQVEIKPE RS15_ARATH 105 0 NGKTFNQVEIKPE O65059 104 0 NGNKWVSVTVTED O21248 53 0 NGKEFVEVKIQPE RS19_METTH 89 0 NGKAFNQVEIRPE RS15_YEAST 98 0 NGRKFLTVFVSET O84529 53 0 NGKTFNQVEIKPE RS15_ORYSA 105 0 NGKTHVRCKITEG RT19_ARATH 178 0 NGKTFVRCKITEG RT19_PETHY 51 0 SGKEFNQVEIKPE RS15_PODAN 105 0 NGKNYVPFLILNQ RR19_ASTLO 53 0 NGKTPVRCKITEG P92813 51 0 TGQEFERVEVQPE RS19_HALHA 93 0 DGQNFERVKVEPE RS19_HALMA 93 0 NGHKWITIKIKED RT19_PLASU 48 0 NGRKYVGVKITEK Q23889 48 0 RIBOSOMALS193 Length of motif = 16 Motif number = 3 Ribosomal protein S19 family motif III - 1 PCODE ST INT QMVGHKLGEFAPTRTF RS19_SYNP6 65 -1 QMVGHKLGEFSPTRTF RR19_GUITH 65 -1 QMVGHKLGEFAPTRTF RR19_CHLVU 65 -1 QMVGHKLGEFAPTRTF RR19_CYAPA 65 -1 DMVGHKLGEFAPTRTF RS19_AQUAE 157 -1 DMVGNKLGEFAPTRKF RS19_MYCCA 62 -1 RMVGHKLGEFSPTLNF RR19_PEA 64 -1 SMVGHKLGEFAPTLNF RR19_TOBAC 64 -1 RMVGHKLGEFAPTRTF RR19_MARPO 64 -1 RMVGHKLGEFSPTLNF RR19_SOYBN 64 -1 EMVGHKLGEFAPTRTY RS19_ECOLI 64 -1 QMVGHKLGEFAPTRTF RS19_SYNY3 65 -1 NMVGHKLGEFSPTRTY Q50265 65 -1 RMVGHKLGEFAPTLNF RR19_SPIOL 64 -1 DMVGHKLGEFAPTATF RS19_BACST 64 -1 DMVGHKLGEFSPTRNF RS19_MYCPN 65 -1 SMVGHKLGEFAPTLNF Q36570 65 -1 QMVGHKLGEFVPTRTF RR19_PORPU 65 -1 DMIGHKLGEFSPTRTF O52336 65 -1 EMIGHKLGEFAPTRTY RS19_HAEIN 64 -1 PMVGRKLGEFVPTRHF RR19_SECCE 63 -1 DMVGHKLGEFSPTRNF RS19_MYCGE 65 -1 PMVGRKLGEFVPTRHF RR19_ORYSA 63 -1 PMVGRKLGEFVPTRHF RR19_MAIZE 63 -1 EMIGHYLGEFAPTRKR O59422 97 -1 HMVGHKLGEFVPTLNF RR19_EPIVI 67 -1 DMVGHKLGEFAPTRTY RS19_BACSU 64 -1 SMVGHKLGEFAPTRTF RS19_MYCTU 65 -1 AMVGHKLGEFAPTRTF RS19_MYCLE 65 -1 NHVGYKLGEFAPTRTF RS19_HELPY 65 -1 DLVGHKLGEFSPTRIF RS19_BORBU 65 -1 QLVGHKLGEFVSTRTF RR19_ODOSI 65 -1 NMIGHRLGEFAPTRRF RS19_THEMA 65 -1 SMVGHKLGXFAPTLNF Q36603 65 -1 RMVDHKLGEFAPTLLF RR19_PICAB 65 -1 RMVDHKLGEFAPTLLF RR19_PINTH 65 -1 QMIGHKLGEFVQTRNY RR19_EUGGR 65 -1 EMIGHYLGEFSITYKP RS15_HUMAN 109 -1 EMIGHYLGEFSLTRKP RS19_METJA 117 -1 DMVGHKLGEFAPTRKR YN8L_YEAST 67 -1 EMIGHYLGEFSITYKP RS15_XENLA 109 -1 EMCGHYLGEFSITYKP RS15_XIPMA 110 -1 EMIGHRLGEFALTRRF O28358 98 -1 EMVGHKFGEFASTRKT RT19_MARPO 57 -1 EFVGHKLGEFSPTRVF RS19_TREPA 68 -1 EMIGHKFGEFAVTRKK RT19_PROWI 56 -1 EMIGHYLAEFSISYKP RS15_ARATH 117 -1 EMIGHYLAEFSISYKP O65059 116 -1 DMIGHKLGEFSLTRKA O21248 65 -1 EMIGCYFGEFAPTRKK RS19_METTH 101 -1 EMLGHYLGEFSITYTP RS15_YEAST 110 -1 TMVGHKLGEFSPTRMF O84529 65 -1 EMIGHYLAEFSISYKP RS15_ORYSA 117 -1 GKVGHKFGEFAFTRKV RT19_ARATH 190 -1 GKVGHKFGEFAFTRKR RT19_PETHY 63 -1 EMVGHYLGEFSISYKP RS15_PODAN 117 -1 QMISSKLGEFSRTRNF RR19_ASTLO 65 -1 GKVGHKFGEFAFTRRR P92813 63 -1 EMIGHYLGEFQLTRSS RS19_HALHA 105 -1 EMLGHYLGEFQLTRSS RS19_HALMA 105 -1 DMIGHKFGEFAFTRKA RT19_PLASU 60 -1 KSLGRKLGEYVLTKKV Q23889 60 -1

User query: Display/Full Code "RIBOSOMALS19"