WORKLIST ENTRIES (1):
RIBOSOMALS19 View alignment View Structure Ribosomal protein S19 family signature
Type of fingerprint: COMPOUND with 3 elements
Links:
PRINTS; PR00681 RIBOSOMALS1; PR00395 RIBOSOMALS2; PR00971 RIBOSOMALS10
PRINTS; PR01034 RIBOSOMALS12; PR00972 RIBSOMALS12E; PR00973 RIBOSOMALS17
PRINTS; PR00974 RIBOSOMALS18; PR00976 RIBOSOMALS21
INTERPRO; IPR002222
PROSITE; PS00323 RIBOSOMAL_S19
PFAM; PF00203 Ribosomal_S19
PROTOMAP; 198
Creation date 05-OCT-1998; UPDATE 23-JUN-1999
1. KURLAND, C.G., JORGENSEN, F., RICHTER, A., EHRENBERG, M., BILGIN, N.
AND ROJAS, A.M.
Through the accuracy window.
IN THE RIBOSOME: STRUCTURE, FUNCTION AND EVOLUTION (W.E.HILL, A.DAHLBERG,
R.A.GARRETT, P.B.MOORE, D.SCHLESSINGER AND J.R.WARNER, EDS.)
PP.513-526 (AMERICAN SOCIETY FOR MICROBIOLOGY, WASHINGTON DC) (1990).
2. MUELLER, F. AND BRIMACOMBE, R.
A new model for the three-dimensional folding of Escherichia coli
16S ribosomal RNA. II. The RNA-protein interaction data.
J.MOL.BIOL. 271(4) 545-565 (1997).
3. AGAFONOV, D.E., KOLB, V.A. AND SPIRIN, A.S.
Proteins on ribosome surface: measurements of protein exposure by
hot tritium bombardment technique.
PROC.NATL.ACAD.SCI.U.S.A. 94(24) 12892-7 (1997).
4. KITAGAWA, M., TAKASAWA, S., KIKUCHI, N., ITOH, T,. TERAOKA, H.,
YAMAMOTO, H. AND OKAMOTO, H.
Rig encodes ribosomal protein S15. The primary structure of mammalian
ribosomal protein S15.
FEBS LETT. 283(2) 210 (1991).
5. OTAKA, E., SUZUKI, K. AND HASHIMOTO, T.
Examination of protein sequence homologies. VII. The complementary molecular
coevolution of ribosomal proteins equivalent to Escherichia coli L7/L12 and
L10.
PROTEIN SEQ.DATA ANAL. 3 11-19 (1990).
Ribosomes are ribonucleoprotein particles that are the site of protein
synthesis. The structure of the ribosome is well conserved across the
prokaryotic and eukaryotic lineages, reflecting the early origin of their
essential function. They comprise two subunits, which can dissociate on
heating. In prokaryotes, the small subunit contains a single large RNA
moeity denoted, according to its sedimentation coefficient, 16S rRNA, and 21
different ribosomal proteins, designated S1-S21. Eukaryotic small ribosomal
subunits contain 33 proteins, many of which are similar to those found
in prokaryotes.
There are two major tRNA binding sites on the ribosome, termed the A site,
where incoming aminoacyl-tRNA is bound, and the P site (for peptidyl tRNA),
where new peptide bonds are formed. The ribosomal proteins catalyse ribosome
assembly and stabilise the rRNA, tuning the structure of the ribosome for
optimal function [1]. Evidence suggests that, in prokaryotes, the peptidyl
transferase reaction is performed by the large subunit 23S rRNA, whereas
proteins probably have a greater role in eukaryotic ribosomes. Most of the
proteins lie close to, or on the surface of, the 30S subunit, arranged
peripherally around the rRNA [2]. The small subunit ribosomal proteins can
be categorised as primary binding proteins, which bind directly and
independently to 16S rRNA; secondary binding proteins, which display no
specific affinity for 16S rRNA, but its assembly is contingent upon the
presence of one or more primary binding proteins; and tertiary binding
proteins, which require the presence of one or more secondary binding
proteins and sometimes other tertiary binding proteins.
The small ribosomal subunit protein S19 contains 88-144 amino acid residues.
In Escherichia coli, S19 is known to form a complex with S13 that binds
strongly to 16S ribosomal RNA. Experimental evidence [3] has revealed that
S19 is moderately exposed on the ribosomal surface, and is designated
a secondary rRNA binding protein. S19 belongs to a family of ribosomal
proteins [3,4] that includes: eubacterial S19; algal and plant chloroplast
S19; cyanelle S19; archaebacterial S19; plant mitochondrial S19; and
eukaryotic S15 ('rig' protein).
RIBOSOMALS19 is a 3-element fingerprint that provides a signature for S19
ribosomal proteins. The fingerprint was derived from an initial alignment
of 29 sequences: the motifs were drawn from short conserved regions spanning
the full alignment length - motifs 3 and 4 span the conserved C-terminal
region encoded by PROSITE pattern RIBOSOMAL_S19 (PS00323). Two iterations
on OWL30.2 were required to reach convergence, at which point a true set
comprising 66 sequences was identified. A single partial match was also
found, RS19_YERPS, a fragment that lacks the portion of sequence bearing
motif 3.
An update on SPTR37_9f identified a true set of 62 sequences, and 1
partial match.
SUMMARY INFORMATION
62 codes involving 3 elements
1 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
3| 62 62 62
2| 1 1 0
--+----------------
| 1 2 3
True positives..
RS19_SYNP6 RR19_GUITH RR19_CHLVU RR19_CYAPA
RS19_AQUAE RS19_MYCCA RR19_PEA RR19_TOBAC
RR19_MARPO RR19_SOYBN RS19_ECOLI RS19_SYNY3
Q50265 RR19_SPIOL RS19_BACST RS19_MYCPN
Q36570 RR19_PORPU O52336 RS19_HAEIN
RR19_SECCE RS19_MYCGE RR19_ORYSA RR19_MAIZE
O59422 RR19_EPIVI RS19_BACSU RS19_MYCTU
RS19_MYCLE RS19_HELPY RS19_BORBU RR19_ODOSI
RS19_THEMA Q36603 RR19_PICAB RR19_PINTH
RR19_EUGGR RS15_HUMAN RS19_METJA YN8L_YEAST
RS15_XENLA RS15_XIPMA O28358 RT19_MARPO
RS19_TREPA RT19_PROWI RS15_ARATH O65059
O21248 RS19_METTH RS15_YEAST O84529
RS15_ORYSA RT19_ARATH RT19_PETHY RS15_PODAN
RR19_ASTLO P92813 RS19_HALHA RS19_HALMA
RT19_PLASU Q23889
Subfamily: Codes involving 2 elements
Subfamily True positives..
O59084
PROTEIN TITLES
RS19_SYNP6 30S RIBOSOMAL PROTEIN S19 - SYNECHOCOCCUS SP. (STRAIN PCC 63
RR19_GUITH CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - GUILLARDIA THETA (CR
RR19_CHLVU CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - CHLORELLA VULGARIS.
RR19_CYAPA CYANELLE 30S RIBOSOMAL PROTEIN S19 - CYANOPHORA PARADOXA.
RS19_AQUAE 30S RIBOSOMAL PROTEIN S19 - AQUIFEX AEOLICUS.
RS19_MYCCA 30S RIBOSOMAL PROTEIN S19 - MYCOPLASMA CAPRICOLUM.
RR19_PEA CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PISUM SATIVUM (GARDE
RR19_TOBAC CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - NICOTIANA TABACUM (C
RR19_MARPO CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - MARCHANTIA POLYMORPH
RR19_SOYBN CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - GLYCINE MAX (SOYBEAN
RS19_ECOLI 30S RIBOSOMAL PROTEIN S19 - ESCHERICHIA COLI.
RS19_SYNY3 30S RIBOSOMAL PROTEIN S19 - SYNECHOCYSTIS SP. (STRAIN PCC 68
Q50265 RPL23 - PHYTOPLASMA SP.
RR19_SPIOL CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 (CS-S23) - SPINACIA OL
RS19_BACST 30S RIBOSOMAL PROTEIN S19 (BS19) - BACILLUS STEAROTHERMOPHIL
RS19_MYCPN 30S RIBOSOMAL PROTEIN S19 - MYCOPLASMA PNEUMONIAE.
Q36570 RPS19 PROTEIN - NICOTIANA BIGELOVII (BIGELOV'S TOBACCO).
RR19_PORPU CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PORPHYRA PURPUREA.
O52336 RIBOSOMAL PROTEIN S19 - MYCOPLASMA GALLISEPTICUM.
RS19_HAEIN 30S RIBOSOMAL PROTEIN S19 - HAEMOPHILUS INFLUENZAE, AND ACTI
RR19_SECCE CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - SECALE CEREALE (RYE)
RS19_MYCGE 30S RIBOSOMAL PROTEIN S19 - MYCOPLASMA GENITALIUM.
RR19_ORYSA CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ORYZA SATIVA (RICE).
RR19_MAIZE CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ZEA MAYS (MAIZE).
O59422 132AA LONG HYPOTHETICAL 30S RIBOSOMAL PROTEIN S19 - PYROCOCC
RR19_EPIVI CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - EPIFAGUS VIRGINIANA
RS19_BACSU 30S RIBOSOMAL PROTEIN S19 (BS19) - BACILLUS SUBTILIS.
RS19_MYCTU 30S RIBOSOMAL PROTEIN S19 - MYCOBACTERIUM TUBERCULOSIS, AND
RS19_MYCLE 30S RIBOSOMAL PROTEIN S19 - MYCOBACTERIUM LEPRAE.
RS19_HELPY 30S RIBOSOMAL PROTEIN S19 - HELICOBACTER PYLORI (CAMPYLOBACT
RS19_BORBU 30S RIBOSOMAL PROTEIN S19 - BORRELIA BURGDORFERI (LYME DISEA
RR19_ODOSI CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ODONTELLA SINENSIS.
RS19_THEMA 30S RIBOSOMAL PROTEIN S19 - THERMOTOGA MARITIMA.
Q36603 RPS19 PROTEIN - NICOTIANA TABACUM (COMMON TOBACCO).
RR19_PICAB CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PICEA ABIES (NORWAY
RR19_PINTH CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - PINUS THUNBERGII (GR
RR19_EUGGR CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - EUGLENA GRACILIS.
RS15_HUMAN 40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) - HOMO SAPIENS (HUMA
RS19_METJA 30S RIBOSOMAL PROTEIN S19P - METHANOCOCCUS JANNASCHII.
YN8L_YEAST PUTATIVE 40S RIBOSOMAL PROTEIN YNR037C - SACCHAROMYCES CEREV
RS15_XENLA 40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) - XENOPUS LAEVIS (AF
RS15_XIPMA 40S RIBOSOMAL PROTEIN S15 (RIG PROTEIN) - XIPHOPHORUS MACULA
O28358 SSU RIBOSOMAL PROTEIN S19P (RPS19P) - ARCHAEOGLOBUS FULGIDUS
RT19_MARPO MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - MARCHANTIA POLYMORPHA
RS19_TREPA 30S RIBOSOMAL PROTEIN S19 - TREPONEMA PALLIDUM.
RT19_PROWI MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - PROTOTHECA WICKERHAMII
RS15_ARATH 40S RIBOSOMAL PROTEIN S15 - ARABIDOPSIS THALIANA (MOUSE-EAR
O65059 PROBABLE 40S RIBOSOMAL PROTEIN S15 - PICEA MARIANA (BLACK SP
O21248 RIBOSOMAL PROTEIN S19 - RECLINOMONAS AMERICANA.
RS19_METTH 30S RIBOSOMAL PROTEIN S19P - METHANOBACTERIUM THERMOAUTOTROP
RS15_YEAST 40S RIBOSOMAL PROTEIN S15 (S21) (YS21) (RP52) (RIG PROTEIN)
O84529 S19 RIBOSOMAL PROTEIN - CHLAMYDIA TRACHOMATIS.
RS15_ORYSA 40S RIBOSOMAL PROTEIN S15 - ORYZA SATIVA (RICE).
RT19_ARATH 40S RIBOSOMAL PROTEIN S19, MITOCHONDRIAL PRECURSOR - ARABIDO
RT19_PETHY MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - PETUNIA HYBRIDA (PETUN
RS15_PODAN 40S RIBOSOMAL PROTEIN S15 (S12) - PODOSPORA ANSERINA.
RR19_ASTLO CHLOROPLAST 30S RIBOSOMAL PROTEIN S19 - ASTASIA LONGA (EUGLE
P92813 RIBOSOMAL PROTEIN S19 - ORYZA SATIVA (RICE).
RS19_HALHA 30S RIBOSOMAL PROTEIN S19 (HHAS19) - HALOBACTERIUM HALOBIUM.
RS19_HALMA 30S RIBOSOMAL PROTEIN S19 (HMAS19) (HS18) - HALOARCULA MARIS
RT19_PLASU MITOCHONDRIAL RIBOSOMAL PROTEIN S19 - PLATYMONAS SUBCORDIFOR
Q23889 RIBOSOMAL PROTEIN S19 - DICTYOSTELIUM DISCOIDEUM (SLIME MOLD
O59084 639AA LONG HYPOTHETICAL PROTEIN - PYROCOCCUS HORIKOSHII.
SCAN HISTORY
OWL30_2 2 300 NSINGLE
SPTR37_9f 1 300 NSINGLE
INITIAL MOTIF SETS
RIBOSOMALS191 Length of motif = 20 Motif number = 1
Ribosomal protein S19 family motif I - 1
PCODE ST INT
TKSRSSTVFPSMVGHNISVY RR19_ASTLO 33 33
TWSRASTILPMMVGHTIAVH RR19_CYAPA 33 33
TWSRASTIVPTMIGHTIAVH RR19_MARPO 32 32
TWSRRSTIFPNMIGLTIAVH RS19_ECOLI 32 32
TWSRRSTIFPQFVGHTIAVY RS19_BACST 32 32
TWSRRSTIFPEFIGKTFGVY RS19_MYCCA 30 30
TWSRASMIIPKWVGHGIAVY RS19_THEMA 33 33
TWSRASTIIPIMIGHMISIH RR19_EPIVI 35 35
TWSRKSTIIPIMIGHTIAIH RR19_PEA 32 32
TWSRASSILPAMVGHTIAIH RR19_MAIZE 31 31
TWSRSCTIIPIMIGNTIGVY RR19_EUGGR 33 33
IWSRRSTILPEYVDSAVRIY RT19_ARATH 158 158
IWSRRSSILPEFVDCFVRIY RT19_PETHY 31 31
IWSRRSCILPQFVGCYAQIY RT19_MARPO 25 25
IWSRRSAILPQFVGKTVSIH RT19_PROWI 24 24
THLRDMPVLPEFVGLTFAVY RS19_HALHA 48 48
THLRDMIILPEMVGSMVGVY RS15_HUMAN 77 77
THLRNMIIVPEMIGSIIGVY RS15_ARATH 85 85
THLRNMIIVPEMIGSIVGVY RS15_ORYSA 85 85
THLRDMIVVPEMIGSVVGIY RS15_PODAN 85 85
THMRNMIIVPEMIGSVVGIY RS15_YEAST 78 78
THLRDMPVVPEMVGLTLAVH RS19_HALMA 73 73
TNARAATILPQFVGLKFQIH YN8L_YEAST 35 35
TWSRRSVILPQFIGLSFNIY S78142 33 33
THCRDMVVLPEMVGKVVFVH H69489 66 66
TYSRATTIIPEFVGHTIAVH AE0006697 125 125
THLRDMVILPEMVGSMVGVY RS15_XIPMA 78 78
IYSRRSVVSPKFIGREVEIY RT19_PLASU 28 28
RIBOSOMALS192 Length of motif = 13 Motif number = 2
Ribosomal protein S19 family motif II - 1
PCODE ST INT
NGKNYVPFLILNQ RR19_ASTLO 53 0
NGRQHLPVFITDQ RR19_CYAPA 53 0
NGQEHLPIYITDR RR19_MARPO 52 0
NGRQHVPVFVTDE RS19_ECOLI 52 0
DGRRHVPVYITED RS19_BACST 52 0
NGKEFIPVYITED RS19_MYCCA 50 0
NGMKHIPVYITEN RS19_THEMA 53 0
NGKEHLPIYITDH RR19_EPIVI 55 0
NGKEHLPVYITDR RR19_PEA 52 0
NGKEHIPIYITNP RR19_MAIZE 51 0
NGKEHIPVLVSDQ RR19_EUGGR 53 0
NGKTHVRCKITEG RT19_ARATH 178 0
NGKTFVRCKITEG RT19_PETHY 51 0
NGKGFVGLKITEE RT19_MARPO 45 0
NGRIFIPCKISPE RT19_PROWI 44 0
TGQEFERVEVQPE RS19_HALHA 68 0
NGKTFNQVEIKPE RS15_HUMAN 97 0
NGKTFNQVEIKPE RS15_ARATH 105 0
NGKTFNQVEIKPE RS15_ORYSA 105 0
SGKEFNQVEIKPE RS15_PODAN 105 0
NGKAFNQVEIRPE RS15_YEAST 98 0
DGQNFERVKVEPE RS19_HALMA 93 0
NGKEYVPIEISED YN8L_YEAST 55 0
NGNKWVSVTVTED S78142 53 0
NGKEFVRVEIKPE H69489 86 0
NGKTFVPVYITQD AE0006697 145 0
NGKTFNQVEIKPE RS15_XIPMA 98 0
NGHKWITIKIKED RT19_PLASU 48 0
RIBOSOMALS193 Length of motif = 16 Motif number = 3
Ribosomal protein S19 family motif III - 1
PCODE ST INT
QMISSKLGEFSRTRNF RR19_ASTLO 65 -1
QMVGHKLGEFAPTRTF RR19_CYAPA 65 -1
RMVGHKLGEFAPTRTF RR19_MARPO 64 -1
EMVGHKLGEFAPTRTY RS19_ECOLI 64 -1
DMVGHKLGEFAPTATF RS19_BACST 64 -1
DMVGNKLGEFAPTRKF RS19_MYCCA 62 -1
NMIGHRLGEFAPTRRF RS19_THEMA 65 -1
HMVGHKLGEFVPTLNF RR19_EPIVI 67 -1
RMVGHKLGEFSPTLNF RR19_PEA 64 -1
PMVGRKLGEFVPTRHF RR19_MAIZE 63 -1
QMIGHKLGEFVQTRNY RR19_EUGGR 65 -1
GKVGHKFGEFAFTRKV RT19_ARATH 190 -1
GKVGHKFGEFAFTRKR RT19_PETHY 63 -1
EMVGHKFGEFASTRKT RT19_MARPO 57 -1
EMIGHKFGEFAVTRKK RT19_PROWI 56 -1
EMIGHYLGEFQLTRSS RS19_HALHA 80 -1
EMIGHYLGEFSITYKP RS15_HUMAN 109 -1
EMIGHYLAEFSISYKP RS15_ARATH 117 -1
EMIGHYLAEFSISYKP RS15_ORYSA 117 -1
EMVGHYLGEFSISYKP RS15_PODAN 117 -1
EMLGHYLGEFSITYTP RS15_YEAST 110 -1
EMLGHYLGEFQLTRSS RS19_HALMA 105 -1
DMVGHKLGEFAPTRKR YN8L_YEAST 67 -1
DMIGHKLGEFSLTRKA S78142 65 -1
EMIGHRLGEFALTRRF H69489 98 -1
DMVGHKLGEFAPTRTF AE0006697 157 -1
EMCGHYLGEFSITYKP RS15_XIPMA 110 -1
DMIGHKFGEFAFTRKA RT19_PLASU 60 -1
FINAL MOTIF SETS
RIBOSOMALS191 Length of motif = 20 Motif number = 1
Ribosomal protein S19 family motif I - 1
PCODE ST INT
TWSRASTILPQMIGHTIAVH RS19_SYNP6 33 33
TWSRSSTILPNMVGATIAVY RR19_GUITH 33 33
TWSRSSTIVPLMIGHTIAVH RR19_CHLVU 33 33
TWSRASTILPMMVGHTIAVH RR19_CYAPA 33 33
TYSRATTIIPEFVGHTIAVH RS19_AQUAE 125 125
TWSRRSTIFPEFIGKTFGVY RS19_MYCCA 30 30
TWSRKSTIIPIMIGHTIAIH RR19_PEA 32 32
TWSRASTIIPTMIGHTIAIH RR19_TOBAC 32 32
TWSRASTIVPTMIGHTIAVH RR19_MARPO 32 32
TWSRASTIIPTMIGHTIAIH RR19_SOYBN 32 32
TWSRRSTIFPNMIGLTIAVH RS19_ECOLI 32 32
TWSRASTILPQMVGHTIAVH RS19_SYNY3 33 33
TWSRSSTITPIFVGHKIAVY Q50265 33 33
TWSRASTIIPTMIGHTIAIH RR19_SPIOL 32 32
TWSRRSTIFPQFVGHTIAVY RS19_BACST 32 32
TWSRRSTIFPEFVGNTFAVH RS19_MYCPN 33 33
TWSRASTIIPTXIGHTIAIH Q36570 33 33
TWSRASTIIPDMIGHTIAVY RR19_PORPU 33 33
TWSRRSTIFPDFVGHTFAVH O52336 33 33
TWSRRSMIIPSMIGLTIAVH RS19_HAEIN 32 32
TWSRASSILPTMVGHTIAIH RR19_SECCE 31 31
TWSRRSTIFPEFVGNTFSVH RS19_MYCGE 33 33
TWSRASSILPAMVGHTIAIH RR19_ORYSA 31 31
TWSRASSILPAMVGHTIAIH RR19_MAIZE 31 31
THCRDMIILPEMVGLTIYVH O59422 65 65
TWSRASTIIPIMIGHMISIH RR19_EPIVI 35 35
TWSRRSTIFPQFIGHTIAVY RS19_BACSU 32 32
TWSRRSTIIPDFIGHTFAVH RS19_MYCTU 33 33
TWSRRSTIIPDFIGHTFAVH RS19_MYCLE 33 33
TWSRRSTILPEMIGFTYNVH RS19_HELPY 33 33
TYSRSSTIIPEMVSLTISVY RS19_BORBU 33 33
TWSRTSTILPTMVGHTIAVY RR19_ODOSI 33 33
TWSRASMIIPKWVGHGIAVY RS19_THEMA 33 33
TWSRASTIIPTMIGHTIAIH Q36603 33 33
TWSRASVIVPAMIGHTIAVH RR19_PICAB 33 33
TWSRASVIVPAMIGHTIAVH RR19_PINTH 33 33
TWSRSCTIIPIMIGNTIGVY RR19_EUGGR 33 33
THLRDMIILPEMVGSMVGVY RS15_HUMAN 77 77
THCRDFVITPDMVGLTFGVY RS19_METJA 85 85
TNARAATILPQFVGLKFQIH YN8L_YEAST 35 35
THLRDMIILPEMVGSMVGVY RS15_XENLA 77 77
THLRDMVILPEMVGSMVGVY RS15_XIPMA 78 78
THCRDMVVLPEMVGKVVFVH O28358 66 66
IWSRRSCILPQFVGCYAQIY RT19_MARPO 25 25
SYSRCSTIIPEMVGFTISVH RS19_TREPA 36 36
IWSRRSAILPQFVGKTVSIH RT19_PROWI 24 24
THLRNMIIVPEMIGSIIGVY RS15_ARATH 85 85
THLRNMIIVPEMIGSIIGVY O65059 84 84
TWSRRSVILPQFIGLSFNIY O21248 33 33
THCRDMIVLPEMVGMTFGIH RS19_METTH 69 69
THMRNMIIVPEMIGSVVGIY RS15_YEAST 78 78
TWSRRSMITPEMIGHTFEVH O84529 33 33
THLRNMIIVPEMIGSIVGVY RS15_ORYSA 85 85
IWSRRSTILPEYVDSAVRIY RT19_ARATH 158 158
IWSRRSSILPEFVDCFVRIY RT19_PETHY 31 31
THLRDMIVVPEMIGSVVGIY RS15_PODAN 85 85
TKSRSSTVFPSMVGHNISVY RR19_ASTLO 33 33
IWSRRSSISPEFVDCSVLIY P92813 31 31
THLRDMPVLPEFVGLTFAVY RS19_HALHA 73 73
THLRDMPVVPEMVGLTLAVH RS19_HALMA 73 73
IYSRRSVVSPKFIGREVEIY RT19_PLASU 28 28
TTERSSVIVPYYLTKTIYVY Q23889 28 28
RIBOSOMALS192 Length of motif = 13 Motif number = 2
Ribosomal protein S19 family motif II - 1
PCODE ST INT
NGRQHVPVYVTEQ RS19_SYNP6 53 0
NGKQHVPVYISDQ RR19_GUITH 53 0
NGREHIPVFITDQ RR19_CHLVU 53 0
NGRQHLPVFITDQ RR19_CYAPA 53 0
NGKTFVPVYITQD RS19_AQUAE 145 0
NGKEFIPVYITED RS19_MYCCA 50 0
NGKEHLPVYITDR RR19_PEA 52 0
NGKEHLPIYITDS RR19_TOBAC 52 0
NGQEHLPIYITDR RR19_MARPO 52 0
NGKEHLPIYITDR RR19_SOYBN 52 0
NGRQHVPVFVTDE RS19_ECOLI 52 0
NGRQHVPVFVSEQ RS19_SYNY3 53 0
NGREHIPVYITEN Q50265 53 0
NGREHLPIYITDR RR19_SPIOL 52 0
DGRRHVPVYITED RS19_BACST 52 0
NGKTFINVYVTDD RS19_MYCPN 53 0
NGKEHLPIYITXS Q36570 53 0
NGKQHFPVFVSDQ RR19_PORPU 53 0
NGKKFINVYVTED O52336 53 0
NGRQHVPVYVSDE RS19_HAEIN 52 0
NGKEHIPIYITNP RR19_SECCE 51 0
NGKTFINVYVTDD RS19_MYCGE 53 0
NGKEHIPIYITNP RR19_ORYSA 51 0
NGKEHIPIYITNP RR19_MAIZE 51 0
NGKEFVPVEIKPE O59422 85 0
NGKEHLPIYITDH RR19_EPIVI 55 0
DGRKHVPVFISED RS19_BACSU 52 0
DGRKHVPVFVTES RS19_MYCTU 53 0
DGRKHVPVFVTEA RS19_MYCLE 53 0
NGRVFIPVYITEN RS19_HELPY 53 0
NGKTFIPIYITED RS19_BORBU 53 0
NGRQHVPIFISDQ RR19_ODOSI 53 0
NGMKHIPVYITEN RS19_THEMA 53 0
XGKEHLPIYITDS Q36603 53 0
NGREHLPIYVTDR RR19_PICAB 53 0
NGREHLPIYVTDR RR19_PINTH 53 0
NGKEHIPVLVSDQ RR19_EUGGR 53 0
NGKTFNQVEIKPE RS15_HUMAN 97 0
NGKEFVEVKVTPE RS19_METJA 105 0
NGKEYVPIEISED YN8L_YEAST 55 0
NGKAFNQVEIKPE RS15_XENLA 97 0
NGKTFNQVEIKPE RS15_XIPMA 98 0
NGKEFVRVEIKPE O28358 86 0
NGKGFVGLKITEE RT19_MARPO 45 0
NGKSWIPVYITEE RS19_TREPA 56 0
NGRIFIPCKISPE RT19_PROWI 44 0
NGKTFNQVEIKPE RS15_ARATH 105 0
NGKTFNQVEIKPE O65059 104 0
NGNKWVSVTVTED O21248 53 0
NGKEFVEVKIQPE RS19_METTH 89 0
NGKAFNQVEIRPE RS15_YEAST 98 0
NGRKFLTVFVSET O84529 53 0
NGKTFNQVEIKPE RS15_ORYSA 105 0
NGKTHVRCKITEG RT19_ARATH 178 0
NGKTFVRCKITEG RT19_PETHY 51 0
SGKEFNQVEIKPE RS15_PODAN 105 0
NGKNYVPFLILNQ RR19_ASTLO 53 0
NGKTPVRCKITEG P92813 51 0
TGQEFERVEVQPE RS19_HALHA 93 0
DGQNFERVKVEPE RS19_HALMA 93 0
NGHKWITIKIKED RT19_PLASU 48 0
NGRKYVGVKITEK Q23889 48 0
RIBOSOMALS193 Length of motif = 16 Motif number = 3
Ribosomal protein S19 family motif III - 1
PCODE ST INT
QMVGHKLGEFAPTRTF RS19_SYNP6 65 -1
QMVGHKLGEFSPTRTF RR19_GUITH 65 -1
QMVGHKLGEFAPTRTF RR19_CHLVU 65 -1
QMVGHKLGEFAPTRTF RR19_CYAPA 65 -1
DMVGHKLGEFAPTRTF RS19_AQUAE 157 -1
DMVGNKLGEFAPTRKF RS19_MYCCA 62 -1
RMVGHKLGEFSPTLNF RR19_PEA 64 -1
SMVGHKLGEFAPTLNF RR19_TOBAC 64 -1
RMVGHKLGEFAPTRTF RR19_MARPO 64 -1
RMVGHKLGEFSPTLNF RR19_SOYBN 64 -1
EMVGHKLGEFAPTRTY RS19_ECOLI 64 -1
QMVGHKLGEFAPTRTF RS19_SYNY3 65 -1
NMVGHKLGEFSPTRTY Q50265 65 -1
RMVGHKLGEFAPTLNF RR19_SPIOL 64 -1
DMVGHKLGEFAPTATF RS19_BACST 64 -1
DMVGHKLGEFSPTRNF RS19_MYCPN 65 -1
SMVGHKLGEFAPTLNF Q36570 65 -1
QMVGHKLGEFVPTRTF RR19_PORPU 65 -1
DMIGHKLGEFSPTRTF O52336 65 -1
EMIGHKLGEFAPTRTY RS19_HAEIN 64 -1
PMVGRKLGEFVPTRHF RR19_SECCE 63 -1
DMVGHKLGEFSPTRNF RS19_MYCGE 65 -1
PMVGRKLGEFVPTRHF RR19_ORYSA 63 -1
PMVGRKLGEFVPTRHF RR19_MAIZE 63 -1
EMIGHYLGEFAPTRKR O59422 97 -1
HMVGHKLGEFVPTLNF RR19_EPIVI 67 -1
DMVGHKLGEFAPTRTY RS19_BACSU 64 -1
SMVGHKLGEFAPTRTF RS19_MYCTU 65 -1
AMVGHKLGEFAPTRTF RS19_MYCLE 65 -1
NHVGYKLGEFAPTRTF RS19_HELPY 65 -1
DLVGHKLGEFSPTRIF RS19_BORBU 65 -1
QLVGHKLGEFVSTRTF RR19_ODOSI 65 -1
NMIGHRLGEFAPTRRF RS19_THEMA 65 -1
SMVGHKLGXFAPTLNF Q36603 65 -1
RMVDHKLGEFAPTLLF RR19_PICAB 65 -1
RMVDHKLGEFAPTLLF RR19_PINTH 65 -1
QMIGHKLGEFVQTRNY RR19_EUGGR 65 -1
EMIGHYLGEFSITYKP RS15_HUMAN 109 -1
EMIGHYLGEFSLTRKP RS19_METJA 117 -1
DMVGHKLGEFAPTRKR YN8L_YEAST 67 -1
EMIGHYLGEFSITYKP RS15_XENLA 109 -1
EMCGHYLGEFSITYKP RS15_XIPMA 110 -1
EMIGHRLGEFALTRRF O28358 98 -1
EMVGHKFGEFASTRKT RT19_MARPO 57 -1
EFVGHKLGEFSPTRVF RS19_TREPA 68 -1
EMIGHKFGEFAVTRKK RT19_PROWI 56 -1
EMIGHYLAEFSISYKP RS15_ARATH 117 -1
EMIGHYLAEFSISYKP O65059 116 -1
DMIGHKLGEFSLTRKA O21248 65 -1
EMIGCYFGEFAPTRKK RS19_METTH 101 -1
EMLGHYLGEFSITYTP RS15_YEAST 110 -1
TMVGHKLGEFSPTRMF O84529 65 -1
EMIGHYLAEFSISYKP RS15_ORYSA 117 -1
GKVGHKFGEFAFTRKV RT19_ARATH 190 -1
GKVGHKFGEFAFTRKR RT19_PETHY 63 -1
EMVGHYLGEFSISYKP RS15_PODAN 117 -1
QMISSKLGEFSRTRNF RR19_ASTLO 65 -1
GKVGHKFGEFAFTRRR P92813 63 -1
EMIGHYLGEFQLTRSS RS19_HALHA 105 -1
EMLGHYLGEFQLTRSS RS19_HALMA 105 -1
DMIGHKFGEFAFTRKA RT19_PLASU 60 -1
KSLGRKLGEYVLTKKV Q23889 60 -1
User query: Display/Full Code "RIBOSOMALS19"