WORKLIST ENTRIES (1):
RIBOSOMALL27 View alignment View Structure Ribosomal protein L27 signature
Type of fingerprint: COMPOUND with 3 elements
Links:
PRINTS; PR00058 RIBOSOMALL5; PR00059 RIBOSOMALL6; PR00060 RIBOSOMALL16
PRINTS; PR00061 RIBOSOMALL19; PR00062 RIBOSOMALL20; PR01249 RIBOSOMALL31
PRINTS; PR01250 RIBOSOMALL34; PR00064 RIBOSOMALL35; PR00881 L7ARS6FAMILY
PRINTS; PR00882 RIBOSOMALL7A; PR00883 NUCLEARHMG; PR00884 RIBOSOMALHS6
INTERPRO; IPR001684
PROSITE; PS00831 RIBOSOMAL_L27
PFAM; PF01016 Ribosomal_L27
Creation date 27-OCT-1994; UPDATE 28-JUN-1999
1. GOLDEN, B.L., RAMAKRISHNAN, V. AND WHITE, S.W.
Ribosomal protein L: structural evidence of gene duplication from a
primitive RNA binding protein.
EMBO J. 12 4901-4908 (1993).
2. RAMAKRISHNAN, V. AND GERCHMAN, S.E.
Cloning, sequencing, and overexpression of genes for ribosomal proteins
from Bacillus stearothermophilus.
J.BIOL.CHEM. 266 880-885 (1991).
Protein synthesis is co-ordinated in all cells by ribosomes, ribonucleo-
protein particles containing more than 50 different proteins and several
large RNAs [1]. Low resolution models show the protein arrangement in both
the large and small ribosomal subunits, but higher resolution structures are
required to reveal the detailed mechanistic functioning of the complex [2].
L27 is a protein from the large (50S) subunit; it is essential for ribosome
function, but its exact role is unclear. It belongs to a family of ribosomal
proteins, including L27 from eubacteria and plant and red alga chloroplasts,
and YmL2 protein from yeast mitochondria.
RIBOSOMALL27 is a 3-element fingerprint that provides a signature for L27
ribosomal proteins. The fingerprint was derived from an initial alignment
of 5 sequences: the motifs were drawn from conserved regions encompassing
the full alignment length, motifs 2 and 3 spanning the central region
encoded by PROSITE pattern RIBOSOMAL_L27 (PS00831). Two iterations on
OWL24.0 were required to reach convergence, at which point a true set
comprising 6 sequences was identified.
An update on SPTR37_9f identified a true set of 26 sequences.
SUMMARY INFORMATION
26 codes involving 3 elements
0 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
3| 26 26 26
2| 0 0 0
--+----------------
| 1 2 3
True positives..
RL27_SYNY3 RL27_ECOLI RL27_HAEIN RK27_TOBAC
RL27_BACSU RK27_PORPU RL27_HELPY O65037
O67650 RK27_ODOSI P71908 RL27_BACST
RL27_STRGR RL27_MYCPN RK27_GUITH RL27_BORBU
O87885 RK27_PLECA RL27_MYCGE RL27_TREPA
O21275 O84424 O19885 RM02_KLULA
RL27_CRYNE RM02_YEAST
PROTEIN TITLES
RL27_SYNY3 50S RIBOSOMAL PROTEIN L27 - SYNECHOCYSTIS SP. (STRAIN PCC 68
RL27_ECOLI 50S RIBOSOMAL PROTEIN L27 - ESCHERICHIA COLI.
RL27_HAEIN 50S RIBOSOMAL PROTEIN L27 - HAEMOPHILUS INFLUENZAE.
RK27_TOBAC 50S RIBOSOMAL PROTEIN L27, CHLOROPLAST PRECURSOR (CL27) - NI
RL27_BACSU 50S RIBOSOMAL PROTEIN L27 (BL30) (BL24) - BACILLUS SUBTILIS.
RK27_PORPU CHLOROPLAST 50S RIBOSOMAL PROTEIN L27 - PORPHYRA PURPUREA.
RL27_HELPY 50S RIBOSOMAL PROTEIN L27 - HELICOBACTER PYLORI (CAMPYLOBACT
O65037 RIBOSOMAL PROTEIN L27 PRECURSOR - ORYZA SATIVA (RICE).
O67650 RIBOSOMAL PROTEIN L27 - AQUIFEX AEOLICUS.
RK27_ODOSI CHLOROPLAST 50S RIBOSOMAL PROTEIN L27 - ODONTELLA SINENSIS.
P71908 HYPOTHETICAL 9.0 KD PROTEIN - MYCOBACTERIUM TUBERCULOSIS.
RL27_BACST 50S RIBOSOMAL PROTEIN L27 (BL30) - BACILLUS STEAROTHERMOPHIL
RL27_STRGR 50S RIBOSOMAL PROTEIN L27 - STREPTOMYCES GRISEUS.
RL27_MYCPN 50S RIBOSOMAL PROTEIN L27 - MYCOPLASMA PNEUMONIAE.
RK27_GUITH CHLOROPLAST 50S RIBOSOMAL PROTEIN L27 - GUILLARDIA THETA (CR
RL27_BORBU 50S RIBOSOMAL PROTEIN L27 - BORRELIA BURGDORFERI (LYME DISEA
O87885 L27 50S RIBOSOMAL BINDING PROTEIN HOMOLOG - LAWSONIA INTRACE
RK27_PLECA CHLOROPLAST 50S RIBOSOMAL PROTEIN L27 - PLEUROCHRYSIS CARTER
RL27_MYCGE 50S RIBOSOMAL PROTEIN L27 - MYCOPLASMA GENITALIUM.
RL27_TREPA 50S RIBOSOMAL PROTEIN L27 - TREPONEMA PALLIDUM.
O21275 RIBOSOMAL PROTEIN L27 - RECLINOMONAS AMERICANA.
O84424 L27 RIBOSOMAL PROTEIN - CHLAMYDIA TRACHOMATIS.
O19885 50S RIBOSOMAL PROTEIN L27 - CYANIDIUM CALDARIUM (GALDIERIA S
RM02_KLULA 60S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL PRECURSOR - KLUYVERO
RL27_CRYNE 60S RIBOSOMAL PROTEIN L27 - CRYPTOCOCCUS NEOFORMANS (FILOBAS
RM02_YEAST 60S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL PRECURSOR (YML2) (YM
SCAN HISTORY
OWL24_0 2 100 NSINGLE
SPTR37_9f 2 100 NSINGLE
INITIAL MOTIF SETS
RIBOSOMALL271 Length of motif = 25 Motif number = 1
Ribosomal protein l27 motif I - 1
PCODE ST INT
KKGVGSTKNGRDSEAKRLGAKRADG RL27_BACSU 12 12
KKGVGSTKDGRDSIAKRLGAKRADG RL27_BACST 3 3
KKAGGSTRNGRDSEAKRLGVKRFGG RL27_ECOLI 3 3
KKGAGSTKNGRDSPGQRLGVKIFGD RL27_TOBAC 54 54
KRAAGSRTSMKDSAGRRLGPKKYEG RM02_YEAST 30 30
KRAAGSRTSMKDSAGRRLGPKKYEG SCN200XG4 30 30
RIBOSOMALL272 Length of motif = 25 Motif number = 2
Ribosomal protein l27 motif II - 1
PCODE ST INT
QFVTGGSILYRQRGTKIYPGENVGR RL27_BACSU 37 0
QFVTGGSILYRQRGTKVHPGLNVGR RL27_BACST 28 0
ESVLAGSIIVRQRGTKFHAGANVGC RL27_ECOLI 28 0
QVAKPGSIIVRQRGTKFHPGKNVGL RL27_TOBAC 79 0
QDVSTGEIIMRQRGTKFYPGENVGI RM02_YEAST 55 0
QDVSTGEIIMRQRGTKFYPGENVGI SCN200XG4 55 0
RIBOSOMALL273 Length of motif = 25 Motif number = 3
Ribosomal protein l27 motif III - 1
PCODE ST INT
GGDDTLFAKIDGTVKFERFGRDRKK RL27_BACSU 62 0
GGDDTLYAKIDGIVRFERLGRDRKR RL27_BACST 53 0
GRDHTLFAKADGKVKFEVKGPKNRK RL27_ECOLI 53 0
GKDHTIFSLIDGLVKFEKFGPDRKK RL27_TOBAC 104 0
GKDHSIFALEPGVVRYYLDPFHPKR RM02_YEAST 80 0
GKDHSIFALEPGVVRYYLDPFHPKR SCN200XG4 80 0
FINAL MOTIF SETS
RIBOSOMALL271 Length of motif = 25 Motif number = 1
Ribosomal protein l27 motif I - 2
PCODE ST INT
KKGTGSTRNGRDSNAQRLGVKRYGG RL27_SYNY3 4 4
KKAGGSTRNGRDSEAKRLGVKRFGG RL27_ECOLI 3 3
KKAGGSTRNGRDSEAKRLGVKRFGG RL27_HAEIN 3 3
KKGAGSTKNGRDSPGQRLGVKIFGD RK27_TOBAC 54 54
KKGVGSTKNGRDSEAKRLGAKRADG RL27_BACSU 12 12
KKGSGSTRNGRDSNSKRLGVKKYGG RK27_PORPU 4 4
KKGQGSTQNNRDSAGRRLGVKKFGS RL27_HELPY 4 4
KKGAGSTKNGRDSPGQRLGVKIYGD O65037 63 63
KASGGSTRNGRDSISKRLGVKRYDG O67650 4 4
KKGAGSTKNGRDSNAKRLGVKRFGG RK27_ODOSI 4 4
KKGASSSRNGRDSAAQRLGVKRYGG P71908 4 4
KKGVGSTKDGRDSIAKRLGAKRADG RL27_BACST 3 3
KKGASSTRNGRDSNAQRLGVKRFGG RL27_STRGR 4 4
KKGVGSTKNGRDSHAKRLGAKKADG RL27_MYCPN 18 18
KKGSGSTRNGRDSNAQRLGVKKYGG RK27_GUITH 4 4
SKSGGSSKNGRDSISKRLGVKRSGG RL27_BORBU 4 4
KKAGGSSRNGRDSPGQRRGIKRFGG O87885 4 4
KKGAGSTKNGRDSNSKRLGVKVYGD RK27_PLECA 4 4
KKGVGSTKNGRDSHSKRLGAKKADG RL27_MYCGE 18 18
KRGGSGSKNGRDSNPKYLGVKLFGG RL27_TREPA 4 4
KKSGGSSRNGRDSKGRRLGVKLFGG O21275 4 4
KKGQGASRNGRDSESKRLGLKVGAG O84424 4 4
KKGSGSSKNGRDSNAKYLGIKKFGK O19885 4 4
KRAAGSRTSMKDSAGRRLGPKKYEG RM02_KLULA 22 22
KAAGGKSKNGRESAGRRLGVKRYGD RL27_CRYNE 37 37
KRAAGSRTSMKDSAGRRLGPKKYEG RM02_YEAST 30 30
RIBOSOMALL272 Length of motif = 25 Motif number = 2
Ribosomal protein l27 motif II - 2
PCODE ST INT
QTVTAGSIIVRQRGTQVHPGNNVGR RL27_SYNY3 29 0
ESVLAGSIIVRQRGTKFHAGANVGC RL27_ECOLI 28 0
ESVLAGSIIVRQRGTKFHAGNNVGM RL27_HAEIN 28 0
QVAKPGSIIVRQRGTKFHPGKNVGL RK27_TOBAC 79 0
QFVTGGSILYRQRGTKIYPGENVGR RL27_BACSU 37 0
EQVTAGNILIRQRGTKVKPGQNVGK RK27_PORPU 29 0
EFVRAGNIIVRQRGTKMHPGNNVGM RL27_HELPY 29 0
QVAKPGAIIIRQRGTRVYPGNNVGM O65037 88 0
QFVKAGNIIVRQRGTRIYPGKNVGM O67650 29 0
QRVKAGNILVRQRGMKFTPGLNVGC RK27_ODOSI 29 0
QVVKAGEILVRQRGTKFHPGVNVGR P71908 29 0
QFVTGGSILYRQRGTKVHPGLNVGR RL27_BACST 28 0
QAVNAGEILVRQRGTHFHPGTGVGR RL27_STRGR 29 0
QMIRTGQIIYRQRGTRVYPGVNVGL RL27_MYCPN 43 0
EYVIAGNILIRQRGTNVKAGFNVGI RK27_GUITH 29 0
QFVKAGEIIVRQRGTKFHKGKNVGL RL27_BORBU 29 0
QKVLAGNILVRQLGTKIHPGENVGM O87885 29 0
QPVKKGGIIIRQRGLTFKPGINVAV RK27_PLECA 29 0
QMIRVGQIIYRQRGTKIFAGQNVAM RL27_MYCGE 43 0
QHARAGSILVRQRGTRIHPGENVGR RL27_TREPA 29 0
EYATIGSIIVRQRGTKILPYKNVGL O21275 29 0
QRVSTGSILVRQRGTKWHPAVNVGR O84424 29 0
QIVTPGQIIVRQRGTKIKPGLNVGL O19885 29 0
QATQVGEIIMRQRGTKFYPGENVGI RM02_KLULA 47 0
QYVTPGTIIVRQRGANFHPGQNVAV RL27_CRYNE 62 0
QDVSTGEIIMRQRGTKFYPGENVGI RM02_YEAST 55 0
RIBOSOMALL273 Length of motif = 25 Motif number = 3
Ribosomal protein l27 motif III - 2
PCODE ST INT
GKDDTLFALIDGVVKFEHKTRSRRK RL27_SYNY3 54 0
GRDHTLFAKADGKVKFEVKGPKNRK RL27_ECOLI 53 0
GRDHTLFATADGKVKFEVKGEKSRK RL27_HAEIN 53 0
GKDHTIFSLIDGLVKFEKFGPDRKK RK27_TOBAC 104 0
GGDDTLFAKIDGTVKFERFGRDRKK RL27_BACSU 62 0
GKDDTLFALIDGFVLFEKSNQKQKT RK27_PORPU 54 0
GKDHTLYALIDGVVKFEHKDRNRKK RL27_HELPY 54 0
GKDHTLFSLIDGLVKFEKYGPDKKK O65037 113 0
GSDYTLFALKDGYVYFETRRKKKFV O67650 54 0
GKDFTLYALTDGIVNFDYKNAQQKR RK27_ODOSI 54 0
GGDDTLFAKTAGAVEFGIKRGRKTV P71908 54 0
GGDDTLYAKIDGIVRFERLGRDRKR RL27_BACST 53 0
GGDDTLFALAAGAVQFGTHRGRKVV RL27_STRGR 54 0
GSDDTLFALSDGLVKYQKFGPKQGK RL27_MYCPN 68 0
GKDNTLYSLINGEVKFERFDKKRKK RK27_GUITH 54 0
GRDYTIFALSSGKVEFKTLKGRKYV RL27_BORBU 54 0
GRDYTLFAKVNGIVTYETYFRKCKR O87885 54 0
GRDYTLFALQEGDVKFETIADRKFV RK27_PLECA 54 0
GSDNTLFALSDGIVRFQKFGSKQSK RL27_MYCGE 68 0
GKDDTLFALAPGVVTYLQRKGRRLV RL27_TREPA 54 0
GRDHTIFALKEGIVSYYKDKTKTYV O21275 54 0
GKDDTLFALVDGIVVMKKTDRTYVS O84424 54 0
GRDYTIFSMIAGRVNYSTQKNKKIV O19885 54 0
GKDHTLFALEPGYVRYYLDPFHPGK RM02_KLULA 72 0
GKDFTIYALQPGYVKFYQHHLPYPH RL27_CRYNE 87 0
GKDHSIFALEPGVVRYYLDPFHPKR RM02_YEAST 80 0
User query: Display/Full Code "RIBOSOMALL27"