WORKLIST ENTRIES (1):

RETINOIDXR View alignment View Structure      Retinoid X receptor signature
 Type of fingerprint: COMPOUND with 4  elements
Links:
   PRINTS; PR00047 STROIDFINGER; PR00398 STRDHORMONER
   PRINTS; PR00521 ANDROGENR; PR01282 COUPTNFACTOR; PR01283 ECDYSTEROIDR
   PRINTS; PR00528 GLCORTICOIDR; PR01284 NUCLEARECPTR; PR00350 VITAMINDR
   PRINTS; PR00544 PROGESTRONER; PR01288 PROXISOMEPAR; PR00543 OESTROGENR
   PRINTS; PR01293 RORNUCRECPTR; PR00546 THYROIDHORMR; PR02034 LIVERXRECPTR
   INTERPRO; IPR000003
   PDB; 1BY4 3Dinfo; 1DKF 3Dinfo; 1DSZ 3Dinfo; 1FBY 3Dinfo; 1H9U 3Dinfo; 1K74 3Dinfo
   SCOP; 1BY4; 1DKF; 1DSZ; 1FBY; 1H9U; 1K74
   CATH; 1BY4; 1DKF; 1DSZ; 1FBY; 1H9U; 1K74
   MIM; 180245; 180246; 180247

 Creation date 09-JUN-1996; UPDATE 17-AUG-2010

   1. NUCLEAR RECEPTORS NOMENCLATURE COMMITTEE
   A unified nomenclature system for the nuclear receptor superfamily.
   CELL 97 161-163 (1999).
  
   2. NISHIKAWA, J-I., KITAURA, M., IMAGAWA, M. AND NISHIHARA, T.
   Vitamin D receptor contains multiple dimerisation interfaces that
   are functionally different.
   NUCLEIC ACIDS RES. 23(4) 606-611 (1995).
  
   3. DE VOS, P., SCHMITT, J., VERHOEVEN, G. AND STUNNENBERG, G.
   Human androgen receptor expressed in HeLa cells activates transcription
   in vitro.
   NUCLEIC ACIDS RES. 22(7) 1161-1166 (1994).

   Steroid or nuclear hormone receptors (NRs) constitute an important super-
   family of transcription regulators that are involved in widely diverse 
   physiological functions, including control of embryonic development, cell
   differentiation and homeostasis [1]. Members of the superfamily include the
   steroid hormone receptors and receptors for thyroid hormone, retinoids, 
   1,25-dihydroxy-vitamin D3 and a variety of other ligands. The proteins 
   function as dimeric molecules in nuclei to regulate the transcription of 
   target genes in a ligand-responsive manner [2,3]. In addition to C-terminal
   ligand-binding domains, these nuclear receptors contain a highly-conserved,
   N-terminal zinc-finger that mediates specific binding to target DNA 
   sequences, termed ligand-responsive elements. In the absence of ligand,
   steroid hormone receptors are thought to be weakly associated with nuclear
   components; hormone binding greatly increases receptor affinity.
  
   NRs are extremely important in medical research, a large number of them
   being implicated in diseases such as cancer, diabetes, hormone resistance
   syndromes, etc. [1]. While several NRs act as ligand-inducible transcription
   factors, many do not yet have a defined ligand and are accordingly termed 
   "orphan" receptors. During the last decade, more than 300 NRs have been
   described, many of which are orphans, which cannot easily be named due to 
   current nomenclature confusions in the literature. However, a new system 
   has recently been introduced in an attempt to rationalise the increasingly 
   complex set of names used to describe superfamily members [1].
  
   The retinoic acid (retinoid X) receptor consists of 3 functional and 
   structural domains: an N-terminal (modulatory) domain; a DNA binding domain
   that mediates specific binding to target DNA sequences (ligand-responsive
   elements); and a hormone binding domain. The N-terminal domain differs 
   between retinoic acid isoforms; the small highly-conserved DNA-binding
   domain (~65 residues) occupies the central portion of the protein; and 
   the ligand binding domain lies at the receptor C-terminus.
  
   RETINOIDXR is an 4-element fingerprint that provides a signature for the
   retinoid X receptors. The fingerprint was derived from an initial alignment
   of 31 sequences: motif 1 lies in the hinge region; and motifs 2-4 reside in
   the ligand-binding domain. Five iterations on SPTR57.15_40.15f were required
   to reach convergence, at which point a true set comprising 125 sequences was
   identified. Several partial matches were also found, all of which are family
   members that fail to make significant matches with one or more motifs.

  SUMMARY INFORMATION
    125 codes involving  4 elements
      7 codes involving  3 elements
      7 codes involving  2 elements

   COMPOSITE FINGERPRINT INDEX
  
    4| 125  125  125  125  
    3|   4    6    5    6  
    2|   4    2    2    6  
   --+---------------------
     |   1    2    3    4  

True positives..
 B3DLT9_XENTR   Q91840_XENLA   Q28CI3_XENTR   RXRA_XENLA     
 Q6INZ0_XENLA   A5D9P3_PIG     RXRB_HUMAN     RXRB_CANFA     
 Q5STQ1_HUMAN   Q5STP9_HUMAN   Q0GFF5_PIG     B7Z7J5_HUMAN   
 A8MS99_HUMAN   A6H7I6_BOVIN   A5D9P5_PIG     Q3TWJ1_MOUSE   
 RXRB_MOUSE     Q8VCR0_MOUSE   Q6MGB3_RAT     A2AJP1_MOUSE   
 RXRA_RAT       RXRA_MOUSE     RXRA_HUMAN     Q6LC96_MOUSE   
 Q3UMU4_MOUSE   Q2PFT8_MACFA   Q2NL52_HUMAN   Q0VJ96_RAT     
 B3KY83_HUMAN   RXRAA_DANRE    A7KE06_SALSA   Q91613_XENLA   
 A7KIK4_SALSA   B5TEI1_9PERC   Q2PK05_PETMA   Q2PK07_PETMA   
 Q589R1_ORYLA   Q8UUM6_ORYLA   C9WBQ7_PAROL   RXRAB_DANRE    
 RXRGA_DANRE    A7LIS3_NUCLP   Q66TQ0_9CAEN   Q2PK06_PETMA   
 RXRGB_DANRE    B2R7C0_HUMAN   RXRG_PONAB     RXRG_PIG       
 RXRG_MOUSE     RXRG_HUMAN     RXRG_BOVIN     Q6LDB2_9MURI   
 D0G7E9_PIG     RXRG_RAT       Q4GZT9_BLAGE   Q4GZU0_BLAGE   
 Q32S23_BOVIN   Q1LV96_DANRE   RXRBA_DANRE    Q8T5C6_BIOGL   
 Q5I7G2_LYMST   B6ZGT6_HUMAN   Q6V7U7_LOCMI   Q9U7D9_LOCMI   
 Q5HZR5_XENLA   RXRG_XENLA     A7LIS4_NUCLP   Q8MX78_BRAFL   
 RXRG_CHICK     Q4KLS2_XENLA   C4N545_CRACN   A1XQQ1_9CRUS   
 O76241_UCAPU   Q3I5Q1_GECLA   A8R3X7_ORNMO   O61449_9ACAR   
 C3S7S0_CARMA   B3DG77_DANRE   RXRBB_DANRE    A8J362_LIOAU   
 Q9NG48_APIME   Q4H2U9_CIOIN   Q07DL1_9HYME   Q5MBF7_9HYME   
 D2WID2_9ARAC   Q7SZG3_TAKRU   C4N546_CRACN   Q9NFY1_TENMO   
 Q3I5Q2_GECLA   A7BJ54_PENJP   C4N544_CRACN   A1JUG2_TRICA   
 C3S7R9_CARMA   C3VMP3_CALFI   Q4W6C8_LEPDE   Q52ZP0_9NEOP   
 Q8I1M8_9NEOP   USP_BOMMO      Q6IVK1_PLOIN   B9UCQ5_HELAM   
 USP_CHOFU      B4JM23_DROGR   A9UEF7_SPOLT   B2ZCQ5_SPOEX   
 B3MYQ7_DROAN   B4NBX1_DROWI   USP_MANSE      B4M7S9_DROVI   
 B3P8U7_DROER   USP_DROME      B4Q1J3_DROYA   B4I9M8_DROSE   
 B4L2K6_DROMO   Q29J92_DROPS   B3RPF4_TRIAD   Q962I5_LUCCU   
 O45117_CHITE   Q7PUT9_ANOGA   Q0IGE0_AEDAE   Q9GSG8_AEDAE   
 Q9GSG7_AEDAE   Q9U3Y3_AEDAL   B0X9K6_CULQU   C4QN62_SCHMA   
 O97120_SCHMA   
Subfamily:  Codes involving 3 elements
 Subfamily True positives..
 Q4RIV7_TETNG   O61448_9ACAR   Q3I5Q0_GECLA   Q3I5P9_GECLA   
 Q7SIF6_HELVI   B4R336_DROSI   A9XG30_BRUMA   
Subfamily:  Codes involving 2 elements
 Subfamily True positives..
 C9J6S9_HUMAN   Q8ST32_DIRIM   C4QH22_SCHMA   Q9U9R6_SCHMA   
 O96562_TRICY   Q9Y1J4_SCHMA   A8P2K0_BRUMA   


  PROTEIN TITLES
   B3DLT9_XENTR     Rxrb protein - Xenopus tropicalis 
   Q91840_XENLA     Retinoid X receptor beta - Xenopus laevis 
   Q28CI3_XENTR     Retinoic acid receptor RXR-beta (Retinoid X receptor beta) -
   RXRA_XENLA       Retinoic acid receptor RXR-alpha - Xenopus laevis 
   Q6INZ0_XENLA     Rxrb protein - Xenopus laevis 
   A5D9P3_PIG       Retinoid X receptor, beta - Sus scrofa 
   RXRB_HUMAN       Retinoic acid receptor RXR-beta - Homo sapiens 
   RXRB_CANFA       Retinoic acid receptor RXR-beta - Canis familiaris 
   Q5STQ1_HUMAN     Retinoid X receptor, beta - Homo sapiens 
   Q5STP9_HUMAN     Retinoid X receptor, beta - Homo sapiens 
   Q0GFF5_PIG       Retinoid X receptor beta - Sus scrofa 
   B7Z7J5_HUMAN     cDNA FLJ61673, highly similar to Retinoic acid receptor RXR-
   A8MS99_HUMAN     Putative uncharacterized protein RXRB - Homo sapiens 
   A6H7I6_BOVIN     Retinoid X receptor, beta - Bos taurus 
   A5D9P5_PIG       Retinoid X receptor, beta - Sus scrofa 
   Q3TWJ1_MOUSE     Putative uncharacterized protein - Mus musculus 
   RXRB_MOUSE       Retinoic acid receptor RXR-beta - Mus musculus 
   Q8VCR0_MOUSE     Putative uncharacterized protein - Mus musculus 
   Q6MGB3_RAT       Retinoid X receptor beta - Rattus norvegicus 
   A2AJP1_MOUSE     Retinoid X receptor alpha - Mus musculus 
   RXRA_RAT         Retinoic acid receptor RXR-alpha - Rattus norvegicus 
   RXRA_MOUSE       Retinoic acid receptor RXR-alpha - Mus musculus 
   RXRA_HUMAN       Retinoic acid receptor RXR-alpha - Homo sapiens 
   Q6LC96_MOUSE     RXR alpha 2 - Mus musculus 
   Q3UMU4_MOUSE     Putative uncharacterized protein - Mus musculus 
   Q2PFT8_MACFA     Putative uncharacterized protein - Macaca fascicularis 
   Q2NL52_HUMAN     Retinoid X receptor, alpha - Homo sapiens 
   Q0VJ96_RAT       Retinoid X receptor alpha - Rattus norvegicus 
   B3KY83_HUMAN     cDNA FLJ16020 fis, clone BRAMY2003287, highly similar to RET
   RXRAA_DANRE      Retinoic acid receptor RXR-alpha-A - Danio rerio 
   A7KE06_SALSA     RXR - Salmo salar 
   Q91613_XENLA     XRXR beta - Xenopus laevis 
   A7KIK4_SALSA     RXRB - Salmo salar 
   B5TEI1_9PERC     Retinoid X receptor gamma - Sebastiscus marmoratus 
   Q2PK05_PETMA     Retinoid X receptor 3 - Petromyzon marinus 
   Q2PK07_PETMA     Retinoid X receptor 1 - Petromyzon marinus 
   Q589R1_ORYLA     RXRB protein - Oryzias latipes 
   Q8UUM6_ORYLA     RXRB protein - Oryzias latipes 
   C9WBQ7_PAROL     Retinoid X receptor beta - Paralichthys olivaceus 
   RXRAB_DANRE      Retinoic acid receptor RXR-alpha-B - Danio rerio 
   RXRGA_DANRE      Retinoic acid receptor RXR-gamma-A - Danio rerio 
   A7LIS3_NUCLP     Retinoid X receptor a isoform - Nucella lapillus 
   Q66TQ0_9CAEN     Retinoid X receptor - Thais clavigera 
   Q2PK06_PETMA     Retinoid X receptor 2 - Petromyzon marinus 
   RXRGB_DANRE      Retinoic acid receptor RXR-gamma-B - Danio rerio 
   B2R7C0_HUMAN     cDNA, FLJ93371, highly similar to Homo sapiens retinoid X re
   RXRG_PONAB       Retinoic acid receptor RXR-gamma - Pongo abelii 
   RXRG_PIG         Retinoic acid receptor RXR-gamma - Sus scrofa 
   RXRG_MOUSE       Retinoic acid receptor RXR-gamma - Mus musculus 
   RXRG_HUMAN       Retinoic acid receptor RXR-gamma - Homo sapiens 
   RXRG_BOVIN       Retinoic acid receptor RXR-gamma - Bos taurus 
   Q6LDB2_9MURI     Retinoid-X receptor-gamma isoform 2 - Mus sp. 
   D0G7E9_PIG       Retinoid X receptor, gamma - Sus scrofa 
   RXRG_RAT         Retinoic acid receptor RXR-gamma - Rattus norvegicus 
   Q4GZT9_BLAGE     Retinoid X receptor - Blattella germanica 
   Q4GZU0_BLAGE     Retinoid X receptor - Blattella germanica 
   Q32S23_BOVIN     Retinoid X receptor beta - Bos taurus 
   Q1LV96_DANRE     Retinoid x receptor, beta - Danio rerio 
   RXRBA_DANRE      Retinoic acid receptor RXR-beta-A - Danio rerio 
   Q8T5C6_BIOGL     RXR-like protein - Biomphalaria glabrata 
   Q5I7G2_LYMST     Retinoid X receptor - Lymnaea stagnalis 
   B6ZGT6_HUMAN     Retinoid X receptor-gamma - Homo sapiens 
   Q6V7U7_LOCMI     Nuclear receptor RXR-l - Locusta migratoria 
   Q9U7D9_LOCMI     RXR - Locusta migratoria 
   Q5HZR5_XENLA     LOC496325 protein - Xenopus laevis 
   RXRG_XENLA       Retinoic acid receptor RXR-gamma - Xenopus laevis 
   A7LIS4_NUCLP     Retinoid X receptor b isoform - Nucella lapillus 
   Q8MX78_BRAFL     Nuclear hormone receptor RXR - Branchiostoma floridae 
   RXRG_CHICK       Retinoic acid receptor RXR-gamma - Gallus gallus 
   Q4KLS2_XENLA     MGC115510 protein - Xenopus laevis 
   C4N545_CRACN     Retinoid X receptor isoform 2 - Crangon crangon 
   A1XQQ1_9CRUS     Retinoid X receptor-like protein - Daphnia magna 
   O76241_UCAPU     Retinoid X receptor homolog - Uca pugilator 
   Q3I5Q1_GECLA     RXRb nuclear hormone receptor - Gecarcinus lateralis 
   A8R3X7_ORNMO     Retinoid X receptor - Ornithodoros moubata 
   O61449_9ACAR     Retinoid X receptor - Amblyomma americanum 
   C3S7S0_CARMA     Retinoid X receptor splice variant RXR-II - Carcinus maenas 
   B3DG77_DANRE     Retinoid x receptor, beta b - Danio rerio 
   RXRBB_DANRE      Retinoic acid receptor RXR-beta-B - Danio rerio 
   A8J362_LIOAU     Ultraspiracle - Liocheles australasiae 
   Q9NG48_APIME     Ultraspiracle protein - Apis mellifera 
   Q4H2U9_CIOIN     Nuclear receptor - Ciona intestinalis 
   Q07DL1_9HYME     Ultraspiracle protein - Scaptotrigona depilis 
   Q5MBF7_9HYME     Ultraspiracle - Melipona scutellaris 
   D2WID2_9ARAC     Retinoid x receptor - Agelena silvatica 
   Q7SZG3_TAKRU     Retinoid X receptor beta - Takifugu rubripes 
   C4N546_CRACN     Retinoid X receptor isoform 3 - Crangon crangon 
   Q9NFY1_TENMO     USP protein - Tenebrio molitor 
   Q3I5Q2_GECLA     RXRa nuclear hormone receptor - Gecarcinus lateralis 
   A7BJ54_PENJP     Retinoid X receptor - Penaeus japonicus 
   C4N544_CRACN     Retinoid X receptor isoform 1 - Crangon crangon 
   A1JUG2_TRICA     Ultraspiracle nuclear receptor - Tribolium castaneum 
   C3S7R9_CARMA     Retinoid X receptor splice variant RXR-I - Carcinus maenas 
   C3VMP3_CALFI     Putative retinoid X receptor - Calanus finmarchicus 
   Q4W6C8_LEPDE     Ultraspiracle - Leptinotarsa decemlineata 
   Q52ZP0_9NEOP     Nuclear receptor usp/RXR - Xenos pecki 
   Q8I1M8_9NEOP     Ultraspiracle - Chilo suppressalis 
   USP_BOMMO        Protein ultraspiracle homolog - Bombyx mori 
   Q6IVK1_PLOIN     USP - Plodia interpunctella 
   B9UCQ5_HELAM     Ultraspiracle isoform 1 - Helicoverpa armigera 
   USP_CHOFU        Protein ultraspiracle homolog - Choristoneura fumiferana 
   B4JM23_DROGR     GH24408 - Drosophila grimshawi 
   A9UEF7_SPOLT     Ultraspiracle - Spodoptera litura 
   B2ZCQ5_SPOEX     Ultraspiracle protein - Spodoptera exigua 
   B3MYQ7_DROAN     GF21986 - Drosophila ananassae 
   B4NBX1_DROWI     GK25746 - Drosophila willistoni 
   USP_MANSE        Protein ultraspiracle homolog - Manduca sexta 
   B4M7S9_DROVI     GJ16389 - Drosophila virilis 
   B3P8U7_DROER     GG12659 - Drosophila erecta 
   USP_DROME        Protein ultraspiracle - Drosophila melanogaster 
   B4Q1J3_DROYA     GE16988 - Drosophila yakuba 
   B4I9M8_DROSE     GM18927 - Drosophila sechellia 
   B4L2K6_DROMO     GI15428 - Drosophila mojavensis 
   Q29J92_DROPS     GA18146 - Drosophila pseudoobscura pseudoobscura 
   B3RPF4_TRIAD     Putative uncharacterized protein - Trichoplax adhaerens 
   Q962I5_LUCCU     Ultraspiracle protein - Lucilia cuprina 
   O45117_CHITE     Ultraspiracle - Chironomus tentans 
   Q7PUT9_ANOGA     AGAP002095-PA - Anopheles gambiae 
   Q0IGE0_AEDAE     Retinoid x receptor (Rxr) - Aedes aegypti 
   Q9GSG8_AEDAE     Ultraspiracle isoform-A - Aedes aegypti 
   Q9GSG7_AEDAE     Ultraspiracle isoform-B - Aedes aegypti 
   Q9U3Y3_AEDAL     Ultraspiracle - Aedes albopictus 
   B0X9K6_CULQU     Retinoid x receptor - Culex quinquefasciatus 
   C4QN62_SCHMA     Retinoic acid receptor RXR - Schistosoma mansoni 
   O97120_SCHMA     Retinoic acid receptor RXR - Schistosoma mansoni 
 
   Q4RIV7_TETNG     Chromosome undetermined SCAF15041, whole genome shotgun sequ
   O61448_9ACAR     Retinoid X receptor - Amblyomma americanum 
   Q3I5Q0_GECLA     RXRc nuclear hormone receptor - Gecarcinus lateralis 
   Q3I5P9_GECLA     RXRd nuclear hormone receptor - Gecarcinus lateralis 
   Q7SIF6_HELVI     Gene regulation protein - Heliothis virescens 
   B4R336_DROSI     GD16395 - Drosophila simulans 
   A9XG30_BRUMA     RXR receptor - Brugia malayi 
 
   C9J6S9_HUMAN     Putative uncharacterized protein ENSP00000399455 - Homo sapi
   Q8ST32_DIRIM     Nuclear receptor RXR - Dirofilaria immitis 
   C4QH22_SCHMA     Retinoid-x-receptor (RXR) - Schistosoma mansoni 
   Q9U9R6_SCHMA     Retinoid-x-receptor - Schistosoma mansoni 
   O96562_TRICY     Retinoic acid X receptor - Tripedalia cystophora 
   Q9Y1J4_SCHMA     Retinoid X receptor RXR-2 - Schistosoma mansoni 
   A8P2K0_BRUMA     Nuclear receptor RXR, putative - Brugia malayi 

SCAN HISTORY SPTR57.15_40.15f 5 250 NSINGLE INITIAL MOTIF SETS RETINOIDXR1 Length of motif = 14 Motif number = 1 Retinoid X receptor motif I - 1 PCODE ST INT EAVQEERQRGKDRN RXRA_HUMAN 203 203 EAVQEERQRGKDRN RXRA_RAT 208 208 EAVQEERQRGKDRN RXRA_MOUSE 208 208 EAVQEERQRGKERN RXRA_XENLA 229 229 EAVQEERQGSRERS RXRG_CHICK 211 211 EAVQEERQRSRERA RXRG_PONAB 207 207 EAVQEERQRSRERA RXRG_HUMAN 207 207 EAVQEERQRSRERA RXRG_MOUSE 207 207 EAVQEERQRSRERA RXRG_PIG 207 207 EAVQEERQRSRERA RXRG_RAT 207 207 EAVQEERQRSRERA RXRG_BOVIN 207 207 EAVQEERQRGKDKD RXRB_CANFA 273 273 EAVQEERQRGKDKD RXRB_HUMAN 273 273 EAVQEERQRGKDKD Q5STQ1_HUMAN 273 273 EAVQEERHGGKDKD Q32S23_BOVIN 272 272 EAVQEERQRGKDKD RXRB_MOUSE 260 260 EAVQEERQRGKDKD Q3TWJ1_MOUSE 260 260 EAVQEERQRSREKS RXRG_XENLA 214 214 RSVQEERQRNKERD RXRBA_DANRE 201 201 EAVQEERQRGKEKS RXRGB_DANRE 196 196 EAVQEERQKNKERD RXRBB_DANRE 158 158 EAVQEERQRAKERS RXRAA_DANRE 171 171 EAVQEERQRGRERS RXRGA_DANRE 185 185 EAVQEERQRGKDKD Q6MGB3_RAT 191 191 EAVQEERQRGKDKD Q8VCR0_MOUSE 150 150 EAVQEERQRAKERS RXRAB_DANRE 122 122 EAVQEERQRVKEKG Q66TQ0_9CAEN 179 179 EAVQEERQRNKEKG A1XQQ1_9CRUS 150 150 SAVQEERQRTKDRN A8J362_LIOAU 161 161 EAVQEERQRTKERG A8R3X7_ORNMO 172 172 EAVQEERQRGKDKD B7Z7J5_HUMAN 83 83 RETINOIDXR2 Length of motif = 26 Motif number = 2 Retinoid X receptor motif II - 1 PCODE ST INT DGILLATGLHVHRNSAHSAGVGAIFD RXRA_HUMAN 322 105 DGILLATGLHVHRNSAHSAGVGAIFD RXRA_RAT 327 105 DGILLATGLHVHRNSAHSAGVGAIFD RXRA_MOUSE 327 105 DGILLATGLHVHRNSAHSAGVGAIFD RXRA_XENLA 348 105 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_CHICK 327 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_PONAB 323 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_HUMAN 323 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_MOUSE 323 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_PIG 323 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_RAT 323 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_BOVIN 323 102 DGILLATGLHVHRNSAHSAGVGAIFD RXRB_CANFA 393 106 DGILLATGLHVHRNSAHSAGVGAIFD RXRB_HUMAN 393 106 DGILLATGLHVHRNSAHSAGVGAIFD Q5STQ1_HUMAN 393 106 DGILLATGLHVHRNSAHSAGVGAIFD Q32S23_BOVIN 392 106 DGILLATGLHVHRNSAHSAGVGAIFD RXRB_MOUSE 380 106 DGILLATGLHVHRNSAHSAGVGAIFD Q3TWJ1_MOUSE 380 106 DGILLATGLHVHRSSAHNAGVGSIFD RXRG_XENLA 330 102 DGILLATGLHVHRNSAHSAGVGAIFD RXRBA_DANRE 317 102 DGILLGTGLHVHRSSAHSAGVGSIFN RXRGB_DANRE 312 102 DEILLATGLHVPKESTHNLGVEAFFD RXRBB_DANRE 271 99 DGILLATGLHVHRNSAHSAGVGAIFD RXRAA_DANRE 290 105 DGILLATGLHVHRSSAHSAGVGSIFD RXRGA_DANRE 301 102 DGILLATGLHVHRNSAHSAGVGAIFD Q6MGB3_RAT 311 106 DGILLATGLHVHRNSAHSAGVGAIFD Q8VCR0_MOUSE 270 106 DGILLATGLHVHRNSAHTAGVGAIFD RXRAB_DANRE 239 103 DGILLATGLHVHRSSAHQAGVGTIFD Q66TQ0_9CAEN 290 97 DGIVLATGLVIHRNSAHQAGVGSIFD A1XQQ1_9CRUS 261 97 DGIVLASGLIVHRNSAHGAGVGTIFD A8J362_LIOAU 272 97 DGIVLATGLVVQRHSAHSAGVGAIFD A8R3X7_ORNMO 314 128 DGILLATGLHVHRNSAHSAGVGAIFD B7Z7J5_HUMAN 203 106 RETINOIDXR3 Length of motif = 19 Motif number = 3 Retinoid X receptor motif III - 1 PCODE ST INT RVLTELVSKMRDMQMDKTE RXRA_HUMAN 348 0 RVLTELVSKMRDMQMDKTE RXRA_RAT 353 0 RVLTELVSKMRDMQMDKTE RXRA_MOUSE 353 0 RVLTELVSKMRDMQMDKTE RXRA_XENLA 374 0 RVLTELVSKMKDMQMDKSE RXRG_CHICK 353 0 RVLTELVSKMKDMQMDKSE RXRG_PONAB 349 0 RVLTELVSKMKDMQMDKSE RXRG_HUMAN 349 0 RVLTELVSKMKDMQMDKSE RXRG_MOUSE 349 0 RVLTELVSKMKDMQMDKSE RXRG_PIG 349 0 RVLTELVSKMKDMRMDKSE RXRG_RAT 349 0 RVLTELVSKMKDMQMDKSE RXRG_BOVIN 349 0 RVLTELVSKMRDMRMDKTE RXRB_CANFA 419 0 RVLTELVSKMRDMRMDKTE RXRB_HUMAN 419 0 RVLTELVSKMRDMRMDKTE Q5STQ1_HUMAN 423 4 RVLTELVSKMRDMRMDKTE Q32S23_BOVIN 418 0 RVLTELVSKMRDMRMDKTE RXRB_MOUSE 406 0 RVLTELVSKMRDMRMDKTE Q3TWJ1_MOUSE 410 4 RVLTELVSKMKDMDMDKSE RXRG_XENLA 356 0 RVLTELVSKMRDMQMDKTE RXRBA_DANRE 357 14 RVLTELVSKMKDMQMDKTE RXRGB_DANRE 338 0 RVLTELVCKMRDMQMDKTE RXRBB_DANRE 311 14 RVLTELVSKMRDMQMDKTE RXRAA_DANRE 316 0 RVLTELVSKMRDMQMDKTE RXRGA_DANRE 327 0 RVLTELVSKMRDMRMDKTE Q6MGB3_RAT 337 0 RVLTELVSKMRDMRMDKTE Q8VCR0_MOUSE 300 4 RVLTELVSKMRDMQMDKTE RXRAB_DANRE 265 0 RVLTELVAKMREMKMDKTE Q66TQ0_9CAEN 316 0 RVLTELVSKMREMKLDLAE A1XQQ1_9CRUS 287 0 RVLTELVAKMREMNMDKTE A8J362_LIOAU 298 0 RVLTELVAKMRELRMDRTE A8R3X7_ORNMO 340 0 RVLTELVSKMRDMRMDKTE B7Z7J5_HUMAN 233 4 RETINOIDXR4 Length of motif = 20 Motif number = 4 Retinoid X receptor motif IV - 1 PCODE ST INT VEALREKVYASLEAYCKHKY RXRA_HUMAN 389 22 VEALREKVYASLEAYCKHKY RXRA_RAT 394 22 VEALREKVYASLEAYCKHKY RXRA_MOUSE 394 22 VEALREKVYASLEAYCKQKY RXRA_XENLA 415 22 VESLREKVYATLEAYTKQKY RXRG_CHICK 394 22 VETLREKVYATLEAYTKQKY RXRG_PONAB 390 22 VETLREKVYATLEAYTKQKY RXRG_HUMAN 390 22 VETLREKVYATLEAYTKQKY RXRG_MOUSE 390 22 VETLREKVYATLEAYTKQKY RXRG_PIG 390 22 VETLREKVYATLEAYTKQKY RXRG_RAT 390 22 VETLREKVYATLEAYTKQKY RXRG_BOVIN 390 22 VEVLREKVYASLETYCKQKY RXRB_CANFA 460 22 VEVLREKVYASLETYCKQKY RXRB_HUMAN 460 22 VEVLREKVYASLETYCKQKY Q5STQ1_HUMAN 464 22 VEVLREKVYASLETYCKQKY Q32S23_BOVIN 459 22 VEILREKVYASLETYCKQKY RXRB_MOUSE 447 22 VEILREKVYASLETYCKQKY Q3TWJ1_MOUSE 451 22 VEALREKVYATLESYTKQKY RXRG_XENLA 397 22 VELLREKVYASLEAYCKQRY RXRBA_DANRE 398 22 VEALREKVYASLETYTKQKY RXRGB_DANRE 379 22 VELLREKVYASLESYCKQKY RXRBB_DANRE 352 22 VEALREKVYASLEAYCKHKY RXRAA_DANRE 357 22 VEALREKVYASLEGYTKHNY RXRGA_DANRE 368 22 VEILREKVYASLETYCKQKY Q6MGB3_RAT 378 22 VEILREKVYASLETYCKQKY Q8VCR0_MOUSE 341 22 VEALRERVYASLEAYCKHKY RXRAB_DANRE 306 22 VEQLREKVYASLEEYCKQRY Q66TQ0_9CAEN 357 22 VEALREKVYATLEEYTRTNY A1XQQ1_9CRUS 328 22 VENLRERVYSALEDYCRQNY A8J362_LIOAU 339 22 VEALRERVYAALEDHCRQQY A8R3X7_ORNMO 381 22 VEVLREKVYASLETYCKQKY B7Z7J5_HUMAN 274 22 FINAL MOTIF SETS RETINOIDXR1 Length of motif = 14 Motif number = 1 Retinoid X receptor motif I - 5 PCODE ST INT EAVQEERQRGKERD B3DLT9_XENTR 159 159 EAVQEERQRGKERD Q91840_XENLA 159 159 EAVQEERQRGKERD Q28CI3_XENTR 196 196 EAVQEERQRGKERN RXRA_XENLA 229 229 EAVQEERQRGRERD Q6INZ0_XENLA 196 196 EAVQEERQRGKDKD A5D9P3_PIG 272 272 EAVQEERQRGKDKD RXRB_HUMAN 273 273 EAVQEERQRGKDKD RXRB_CANFA 273 273 EAVQEERQRGKDKD Q5STQ1_HUMAN 273 273 EAVQEERQRGKDKD Q5STP9_HUMAN 273 273 EAVQEERQRGKDKD Q0GFF5_PIG 272 272 EAVQEERQRGKDKD B7Z7J5_HUMAN 83 83 EAVQEERQRGKDKD A8MS99_HUMAN 177 177 EAVQEERQRGKDKD A6H7I6_BOVIN 272 272 EAVQEERQRGKDKD A5D9P5_PIG 150 150 EAVQEERQRGKDKD Q3TWJ1_MOUSE 260 260 EAVQEERQRGKDKD RXRB_MOUSE 260 260 EAVQEERQRGKDKD Q8VCR0_MOUSE 150 150 EAVQEERQRGKDKD Q6MGB3_RAT 191 191 EAVQEERQRGKDRN A2AJP1_MOUSE 208 208 EAVQEERQRGKDRN RXRA_RAT 208 208 EAVQEERQRGKDRN RXRA_MOUSE 208 208 EAVQEERQRGKDRN RXRA_HUMAN 203 203 EAVQEERQRGKDRN Q6LC96_MOUSE 180 180 EAVQEERQRGKDRN Q3UMU4_MOUSE 208 208 EAVQEERQRGKDRN Q2PFT8_MACFA 203 203 EAVQEERQRGKDRN Q2NL52_HUMAN 203 203 EAVQEERQRGKDRN Q0VJ96_RAT 208 208 EAVQEERQRGKDRN B3KY83_HUMAN 106 106 EAVQEERQRAKERS RXRAA_DANRE 171 171 EAVQEERQRNKERE A7KE06_SALSA 158 158 EAVQEERQRGRERD Q91613_XENLA 196 196 EAVQEERQRNKERE A7KIK4_SALSA 158 158 EAVQEERQRGRERG B5TEI1_9PERC 195 195 EAVQEERQRGRERE Q2PK05_PETMA 197 197 EAVQEERQRGRERE Q2PK07_PETMA 211 211 EAVQEERQRNKERE Q589R1_ORYLA 161 161 EAVQEERQRNKERE Q8UUM6_ORYLA 161 161 EAVQEERQRNKERE C9WBQ7_PAROL 161 161 EAVQEERQRAKERS RXRAB_DANRE 122 122 EAVQEERQRGRERS RXRGA_DANRE 185 185 EAVQEERQRVKEKG A7LIS3_NUCLP 188 188 EAVQEERQRVKEKG Q66TQ0_9CAEN 179 179 EAVQEERQRGRERE Q2PK06_PETMA 211 211 EAVQEERQRGKEKS RXRGB_DANRE 196 196 EAVQEERQRSRERA B2R7C0_HUMAN 207 207 EAVQEERQRSRERA RXRG_PONAB 207 207 EAVQEERQRSRERA RXRG_PIG 207 207 EAVQEERQRSRERA RXRG_MOUSE 207 207 EAVQEERQRSRERA RXRG_HUMAN 207 207 EAVQEERQRSRERA RXRG_BOVIN 207 207 EAVQEERQRSRERA Q6LDB2_9MURI 84 84 EAVQEERQRSRERA D0G7E9_PIG 84 84 EAVQEERQRSRERA RXRG_RAT 207 207 EAVQEERQRTKERD Q4GZT9_BLAGE 163 163 EAVQEERQRTKERD Q4GZU0_BLAGE 163 163 EAVQEERHGGKDKD Q32S23_BOVIN 272 272 RSVQEERQRNKERD Q1LV96_DANRE 168 168 RSVQEERQRNKERD RXRBA_DANRE 201 201 EAVQEERQRVKEKG Q8T5C6_BIOGL 185 185 EAVQEERQRVKEKG Q5I7G2_LYMST 185 185 EAVQEERQRSRERA B6ZGT6_HUMAN 207 207 EAVQEERQRTKERD Q6V7U7_LOCMI 156 156 EAVQEERQRTKERD Q9U7D9_LOCMI 156 156 EAVQEERQRSREKS Q5HZR5_XENLA 214 214 EAVQEERQRSREKS RXRG_XENLA 214 214 TAVQEERQRVKEKG A7LIS4_NUCLP 193 193 SAVQEERQRSKEGK Q8MX78_BRAFL 240 240 EAVQEERQGSRERS RXRG_CHICK 211 211 EAVQEERHRSREKS Q4KLS2_XENLA 215 215 EAVQEERQRTKGDK C4N545_CRACN 145 145 EAVQEERQRNKEKG A1XQQ1_9CRUS 150 150 EAVQEERQRTKGDK O76241_UCAPU 174 174 EAVQEERQRTKGDK Q3I5Q1_GECLA 140 140 EAVQEERQRTKERG A8R3X7_ORNMO 172 172 EAVQEERQRAKDRN O61449_9ACAR 150 150 EAVQEERQRTKGDK C3S7S0_CARMA 142 142 EAVQEERQKNKERD B3DG77_DANRE 158 158 EAVQEERQKNKERD RXRBB_DANRE 158 158 SAVQEERQRTKDRN A8J362_LIOAU 161 161 EAVQEERQRTKERD Q9NG48_APIME 178 178 EAVQEERQKNREQD Q4H2U9_CIOIN 237 237 GAVQEERQRTKERD Q07DL1_9HYME 178 178 EAVHEERQRTKERD Q5MBF7_9HYME 178 178 EAVQEERQRNRERS D2WID2_9ARAC 163 163 EAVQEERQRNRERE Q7SZG3_TAKRU 102 102 EAVQEERQRTKGDK C4N546_CRACN 145 145 EAVQEERQRTKDRD Q9NFY1_TENMO 155 155 GAVEGERQRTKGDK Q3I5Q2_GECLA 145 145 GAAEEERQRTKGDK A7BJ54_PENJP 188 188 GGIEEERQRTKGDK C4N544_CRACN 150 150 EAVQEERQRTKDRD A1JUG2_TRICA 154 154 QTFQEERQRTKGDK C3S7R9_CARMA 145 145 EAVQEERQRGSRGD C3VMP3_CALFI 149 149 EAVQEERQRTKDRD Q4W6C8_LEPDE 136 136 EAVQEERQRNKDRE Q52ZP0_9NEOP 153 153 EAVQEERQRAARGT Q8I1M8_9NEOP 128 128 EAVQEERQRAARRT USP_BOMMO 182 182 EAVQEERQRAARGT Q6IVK1_PLOIN 129 129 EAVQEERQRGARGT B9UCQ5_HELAM 129 129 EAVQEERQRNARGA USP_CHOFU 187 187 EAVQEERQRGARNT B4JM23_DROGR 185 185 EAVQEERQRAARGA A9UEF7_SPOLT 182 182 EAVQEERQRAARGT B2ZCQ5_SPOEX 129 129 EAVQEERQRGARNS B3MYQ7_DROAN 174 174 EAVQEERQRGARAS B4NBX1_DROWI 159 159 EAVQEERQRAARGT USP_MANSE 181 181 EAVQEERQRGARTS B4M7S9_DROVI 166 166 EAVQEERQRGARNA B3P8U7_DROER 171 171 EAVQEERQRGARNA USP_DROME 172 172 EAVQEERQRGARNA B4Q1J3_DROYA 172 172 EAVQEERQRGARNA B4I9M8_DROSE 169 169 EAVQEERQRGARAS B4L2K6_DROMO 155 155 EAVQEERQRGARSA Q29J92_DROPS 161 161 EAVQEERVKNSTPT B3RPF4_TRIAD 69 69 EAVQEERQRGTRAA Q962I5_LUCCU 158 158 EAVQEERQRGGKSQ O45117_CHITE 265 265 EAVQEERQRSSKFS Q7PUT9_ANOGA 193 193 EAVQEERQRSSKFS Q0IGE0_AEDAE 206 206 EAVQEERQRSSKFS Q9GSG8_AEDAE 206 206 EAVQEERQRSSKFS Q9GSG7_AEDAE 181 181 EAVQEERQRSSKFS Q9U3Y3_AEDAL 207 207 EAVQEERQRSSKFS B0X9K6_CULQU 183 183 EAVQEERHRQPSSN C4QN62_SCHMA 339 339 EAVQEERHRQPSSN O97120_SCHMA 339 339 RETINOIDXR2 Length of motif = 26 Motif number = 2 Retinoid X receptor motif II - 5 PCODE ST INT DGILLATGLHVHRNSAHSAGVGAIFD B3DLT9_XENTR 272 99 DGILLATGLHVHRNSAHSAGVGAIFD Q91840_XENLA 272 99 DGILLATGLHVHRNSAHSAGVGAIFD Q28CI3_XENTR 309 99 DGILLATGLHVHRNSAHSAGVGAIFD RXRA_XENLA 348 105 DGILLATGLHVHRNSAHSAGVGAIFD Q6INZ0_XENLA 309 99 DGILLATGLHVHRNSAHSAGVGAIFD A5D9P3_PIG 392 106 DGILLATGLHVHRNSAHSAGVGAIFD RXRB_HUMAN 393 106 DGILLATGLHVHRNSAHSAGVGAIFD RXRB_CANFA 393 106 DGILLATGLHVHRNSAHSAGVGAIFD Q5STQ1_HUMAN 393 106 DGILLATGLHVHRNSAHSAGVGAIFD Q5STP9_HUMAN 393 106 DGILLATGLHVHRNSAHSAGVGAIFD Q0GFF5_PIG 392 106 DGILLATGLHVHRNSAHSAGVGAIFD B7Z7J5_HUMAN 203 106 DGILLATGLHVHRNSAHSAGVGAIFD A8MS99_HUMAN 297 106 DGILLATGLHVHRNSAHSAGVGAIFD A6H7I6_BOVIN 392 106 DGILLATGLHVHRNSAHSAGVGAIFD A5D9P5_PIG 270 106 DGILLATGLHVHRNSAHSAGVGAIFD Q3TWJ1_MOUSE 380 106 DGILLATGLHVHRNSAHSAGVGAIFD RXRB_MOUSE 380 106 DGILLATGLHVHRNSAHSAGVGAIFD Q8VCR0_MOUSE 270 106 DGILLATGLHVHRNSAHSAGVGAIFD Q6MGB3_RAT 311 106 DGILLATGLHVHRNSAHSAGVGAIFD A2AJP1_MOUSE 327 105 DGILLATGLHVHRNSAHSAGVGAIFD RXRA_RAT 327 105 DGILLATGLHVHRNSAHSAGVGAIFD RXRA_MOUSE 327 105 DGILLATGLHVHRNSAHSAGVGAIFD RXRA_HUMAN 322 105 DGILLATGLHVHRNSAHSAGVGAIFD Q6LC96_MOUSE 299 105 DGILLATGLHVHRNSAHSAGVGAIFD Q3UMU4_MOUSE 327 105 DGILLATGLHVHRNSAHSAGVGAIFD Q2PFT8_MACFA 322 105 DGILLATGLHVHRNSAHSAGVGAIFD Q2NL52_HUMAN 322 105 DGILLATGLHVHRNSAHSAGVGAIFD Q0VJ96_RAT 327 105 DGILLATGLHVHRNSAHSAGVGAIFD B3KY83_HUMAN 225 105 DGILLATGLHVHRNSAHSAGVGAIFD RXRAA_DANRE 290 105 DGILLATGLHVHRNSAHSAGVGAIFD A7KE06_SALSA 276 104 DGILLATGLHVHRNSAHSAGVGAIFE Q91613_XENLA 312 102 DGILLATGLHVHRNSAHSAGVGVIFD A7KIK4_SALSA 274 102 DGILLATGLHVHRNSAHSAGVGSIFD B5TEI1_9PERC 311 102 DGILLATGLHVHRSSAHSAGVGSIFD Q2PK05_PETMA 324 113 DGILLATGLHVHRSSAHSAGVGSIFD Q2PK07_PETMA 338 113 DGILLATGLHVHRNSAHSAGVGAIFD Q589R1_ORYLA 275 100 DGILLATGLHVHRNSAHSAGVGAIFD Q8UUM6_ORYLA 275 100 DGILLATGLHVHRNSAHSAGVGAIFD C9WBQ7_PAROL 277 102 DGILLATGLHVHRNSAHTAGVGAIFD RXRAB_DANRE 239 103 DGILLATGLHVHRSSAHSAGVGSIFD RXRGA_DANRE 301 102 DGILLATGLHVHRSSAHQAGVGTIFD A7LIS3_NUCLP 299 97 DGILLATGLHVHRSSAHQAGVGTIFD Q66TQ0_9CAEN 290 97 DGILLATGLHVHRSSAHSAGVGSIFD Q2PK06_PETMA 337 112 DGILLGTGLHVHRSSAHSAGVGSIFN RXRGB_DANRE 312 102 DGILLATGLHVHRSSAHSAGVGSIFD B2R7C0_HUMAN 323 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_PONAB 323 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_PIG 323 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_MOUSE 323 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_HUMAN 323 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_BOVIN 323 102 DGILLATGLHVHRSSAHSAGVGSIFD Q6LDB2_9MURI 200 102 DGILLATGLHVHRSSAHSAGVGSIFD D0G7E9_PIG 200 102 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_RAT 323 102 DGIVLATGLTVHRNSAHQAGVGAIFD Q4GZT9_BLAGE 296 119 DGIVLATGLTVHRNSAHQAGVGAIFD Q4GZU0_BLAGE 273 96 DGILLATGLHVHRNSAHSAGVGAIFD Q32S23_BOVIN 392 106 DGILLATGLHVHRNSAHSAGVGAIFD Q1LV96_DANRE 284 102 DGILLATGLHVHRNSAHSAGVGAIFD RXRBA_DANRE 317 102 DGILLATGLHVHRSSAHQAGVGTIFD Q8T5C6_BIOGL 296 97 DGILLATGLHVHRSSAHQAGVGTIFD Q5I7G2_LYMST 296 97 DGILLATGLHVHRSSAHSAGVGSIFD B6ZGT6_HUMAN 323 102 DGIVLATGLTVHRNSAHQAGVGTIFD Q6V7U7_LOCMI 272 102 DGIVLATGLTVHRNSAHQAGVGTIFD Q9U7D9_LOCMI 250 80 DGILLATGLHVHRSSAHNAGVGSIFD Q5HZR5_XENLA 330 102 DGILLATGLHVHRSSAHNAGVGSIFD RXRG_XENLA 330 102 DGILLATGLHVHRSSAHQAGVGTIFD A7LIS4_NUCLP 304 97 DGILLASGLHVHRSSAHQAGVGTIFD Q8MX78_BRAFL 351 97 DGILLATGLHVHRSSAHSAGVGSIFD RXRG_CHICK 327 102 DGILLATGLHVHRSSAHNAGVGSIFD Q4KLS2_XENLA 331 102 DGIVLATGLVVHRSSAHQAGVGTIFD C4N545_CRACN 256 97 DGIVLATGLVIHRNSAHQAGVGSIFD A1XQQ1_9CRUS 261 97 DGIVLATGLVIHRSSAHQAGVGAIFD O76241_UCAPU 319 131 DGIVLATGLVIHRSSAHQAGVGAIFD Q3I5Q1_GECLA 285 131 DGIVLATGLVVQRHSAHSAGVGAIFD A8R3X7_ORNMO 314 128 DGIVLATGLVVQRHSAHGAGVGDIFD O61449_9ACAR 275 111 DGIVLATGLVVHRSSAHQAGVGAIFD C3S7S0_CARMA 295 139 DEILLATGLHVPKESTHNLGVEAFFD B3DG77_DANRE 271 99 DEILLATGLHVPKESTHNLGVEAFFD RXRBB_DANRE 271 99 DGIVLASGLIVHRNSAHGAGVGTIFD A8J362_LIOAU 272 97 DGIVLATGITVHRNSAQQAGVGTIFD Q9NG48_APIME 288 96 DGIILASGLRVYRQSAHSAGVGAIFD Q4H2U9_CIOIN 345 94 DGIVLATGITVHRNSAQQAGVGTIFD Q07DL1_9HYME 288 96 DGIVLATGITVHRNSAQQAGVGTIFD Q5MBF7_9HYME 288 96 DGIVLASGTIVHRNSAHNAGVGTIFD D2WID2_9ARAC 267 90 SKDGVLLASELQRDSANSAGVGAIFD Q7SZG3_TAKRU 216 100 KDGIVLATGLVHRSSAHQAGVGTIFD C4N546_CRACN 255 96 DAIVLATGLTVNKTSAHAVGVGNIYD Q9NFY1_TENMO 269 100 DGIVLATGLVIHRSSAHQAGVGAIFD Q3I5Q2_GECLA 290 131 DGIVLATGLVVHRSSAHHAGVGDIFD A7BJ54_PENJP 298 96 DGIVLATGLVVHRSSAHQAGVGTIFD C4N544_CRACN 261 97 DAIVLATGLTVNKSTAHAVGVGNIYD A1JUG2_TRICA 268 100 DGIVLATGLVVHRSSAHQAGVGAIFD C3S7R9_CARMA 256 97 NGIQLASGVVVTRENAHTSGVGAIFD C3VMP3_CALFI 265 102 EGIILATGLTINKSTAQAVGVGNIYD Q4W6C8_LEPDE 245 95 DAIVLATGYAVNKNSAHQAGLEAIFD Q52ZP0_9NEOP 266 99 QLMCLMPGMTLHRNSALQAGVGQIFD Q8I1M8_9NEOP 264 122 QLICLMPGMTLHRNSALQAGVGQIFD USP_BOMMO 317 121 QLMCLMPGMTLHRNSALQAGVGQIFD Q6IVK1_PLOIN 269 126 QLMCLMPGMTLHRNSALQAGVGQIFD B9UCQ5_HELAM 269 126 QLMCLMPGMTLHRNSAQQAGVGAIFD USP_CHOFU 326 125 QQLFLNQSFSYHRNSAIKAGVHAIFD B4JM23_DROGR 382 183 QLMCLMPGMTLHRNSALQAGVGQIFD A9UEF7_SPOLT 322 126 QLMCLMPGMTLHRNSALQAGVGQIFD B2ZCQ5_SPOEX 267 124 QQLFLNQSFSYHRNSAIKAGVSTIFD B3MYQ7_DROAN 366 178 QQLFLNQSFSYHRNSAIKAGVSTIFD B4NBX1_DROWI 335 162 QLMCLMPGMTLHRNSALQAGVGQIFD USP_MANSE 316 121 QQLFLNQSFSYHRNSAIKAGVHAIFD B4M7S9_DROVI 353 173 QQLFLNQSFSYHRNSAIKAGVSAIFD B3P8U7_DROER 361 176 QQLFLNQSFSYHRNSAIKAGVSAIFD USP_DROME 362 176 QQLFLNQSFSYHRNSAIKAGVSAIFD B4Q1J3_DROYA 363 177 QQLFLNQSFSYHRNSAIKAGVSAIFD B4I9M8_DROSE 359 176 QQLFLSQSFSYHRNSAIKAGVQAIFD B4L2K6_DROMO 338 169 QQLFLNQSFSYHRNSAIKAGVSTIFD Q29J92_DROPS 341 166 DGLLLSTGHYIHRTSAHNAGIGAIFD B3RPF4_TRIAD 189 106 QQLFLNQNFSYHRNSAIKANVVSIFD Q962I5_LUCCU 329 157 QQMCLSRNYTLGRNMAVQAGVVQIFD O45117_CHITE 415 136 QLMCLGPNFTLHRNSAQQAGVDSLFD Q7PUT9_ANOGA 337 130 QLMCLGPNFTLHRNSAQQAGVDTLFD Q0IGE0_AEDAE 347 127 QLMCLGPNFTLHRNSAQQAGVDTLFD Q9GSG8_AEDAE 347 127 QLMCLGPNFTLHRNSAQQAGVDTLFD Q9GSG7_AEDAE 322 127 QLMCLGPNFTLHRNSAQQAGVDTLFD Q9U3Y3_AEDAL 348 127 QLMCLGPNFTLHRNSAQQAGVDTLFD B0X9K6_CULQU 324 127 DGLLLSIGRHLGREVAKSHGLGPLVD C4QN62_SCHMA 537 184 DGLLLSIGRHLGREVAKSHGLGPLVD O97120_SCHMA 537 184 RETINOIDXR3 Length of motif = 19 Motif number = 3 Retinoid X receptor motif III - 5 PCODE ST INT RVLTELVSKMRDMRMDKTE B3DLT9_XENTR 298 0 RVLTELVSKMRDMRMDKTE Q91840_XENLA 298 0 RVLTELVSKMRDMRMDKTE Q28CI3_XENTR 335 0 RVLTELVSKMRDMQMDKTE RXRA_XENLA 374 0 RVLTELVSKMRDMRMDKTE Q6INZ0_XENLA 335 0 RVLTELVSKMRDMRMDKTE A5D9P3_PIG 418 0 RVLTELVSKMRDMRMDKTE RXRB_HUMAN 419 0 RVLTELVSKMRDMRMDKTE RXRB_CANFA 419 0 RVLTELVSKMRDMRMDKTE Q5STQ1_HUMAN 423 4 RVLTELVSKMRDMRMDKTE Q5STP9_HUMAN 419 0 RVLTELVSKMRDMRMDKTE Q0GFF5_PIG 418 0 RVLTELVSKMRDMRMDKTE B7Z7J5_HUMAN 233 4 RVLTELVSKMRDMRMDKTE A8MS99_HUMAN 323 0 RVLTELVSKMRDMRMDKTE A6H7I6_BOVIN 418 0 RVLTELVSKMRDMRMDKTE A5D9P5_PIG 300 4 RVLTELVSKMRDMRMDKTE Q3TWJ1_MOUSE 410 4 RVLTELVSKMRDMRMDKTE RXRB_MOUSE 406 0 RVLTELVSKMRDMRMDKTE Q8VCR0_MOUSE 300 4 RVLTELVSKMRDMRMDKTE Q6MGB3_RAT 337 0 RVLTELVSKMRDMQMDKTE A2AJP1_MOUSE 353 0 RVLTELVSKMRDMQMDKTE RXRA_RAT 353 0 RVLTELVSKMRDMQMDKTE RXRA_MOUSE 353 0 RVLTELVSKMRDMQMDKTE RXRA_HUMAN 348 0 RVLTELVSKMRDMQMDKTE Q6LC96_MOUSE 325 0 RVLTELVSKMRDMQMDKTE Q3UMU4_MOUSE 353 0 RVLTELVSKMRDMQMDKTE Q2PFT8_MACFA 348 0 RVLTELVSKMRDMQMDKTE Q2NL52_HUMAN 348 0 RVLTELVSKMRDMQMDKTE Q0VJ96_RAT 353 0 RVLTELVSKMRDMQMDKTE B3KY83_HUMAN 251 0 RVLTELVSKMRDMQMDKTE RXRAA_DANRE 316 0 RVLTELVSKMRDMQMDKTE A7KE06_SALSA 316 14 RVLTELVSKMRDMRMDKTE Q91613_XENLA 338 0 RVLTELVSKMRDMQMDKTE A7KIK4_SALSA 314 14 RVLTELVSKMKDMQMDKTE B5TEI1_9PERC 337 0 RVLTELVSKMRDMNMDKAE Q2PK05_PETMA 350 0 RVLTELVSKMRDMNMDKAE Q2PK07_PETMA 364 0 RVLTELVSKMRDMQMDKTE Q589R1_ORYLA 313 12 RVLTELVSKMRDMQMDKTE Q8UUM6_ORYLA 313 12 RVLTELVSKMRDMQMDKSE C9WBQ7_PAROL 303 0 RVLTELVSKMRDMQMDKTE RXRAB_DANRE 265 0 RVLTELVSKMRDMQMDKTE RXRGA_DANRE 327 0 RVLTELVAKMREMKMDKTE A7LIS3_NUCLP 325 0 RVLTELVAKMREMKMDKTE Q66TQ0_9CAEN 316 0 RVLTELVSKMRDMNMDKAE Q2PK06_PETMA 363 0 RVLTELVSKMKDMQMDKTE RXRGB_DANRE 338 0 RVLTELVSKMKDMQMDKSE B2R7C0_HUMAN 349 0 RVLTELVSKMKDMQMDKSE RXRG_PONAB 349 0 RVLTELVSKMKDMQMDKSE RXRG_PIG 349 0 RVLTELVSKMKDMQMDKSE RXRG_MOUSE 349 0 RVLTELVSKMKDMQMDKSE RXRG_HUMAN 349 0 RVLTELVSKMKDMQMDKSE RXRG_BOVIN 349 0 RVLTELVSKMKDMQMDKSE Q6LDB2_9MURI 226 0 RVLTELVSKMKDMQMDKSE D0G7E9_PIG 226 0 RVLTELVSKMKDMRMDKSE RXRG_RAT 349 0 RVLTELVAKMREMKMDKTE Q4GZT9_BLAGE 322 0 RVLTELVAKMREMKMDKTE Q4GZU0_BLAGE 299 0 RVLTELVSKMRDMRMDKTE Q32S23_BOVIN 418 0 RVLTELVSKMRDMQMDKTE Q1LV96_DANRE 324 14 RVLTELVSKMRDMQMDKTE RXRBA_DANRE 357 14 RVLTELVAKMRDMKMDKTE Q8T5C6_BIOGL 322 0 RVLTELVAKMREMKMDKTE Q5I7G2_LYMST 322 0 RVLTELVSKMKDMQMDKSE B6ZGT6_HUMAN 349 0 RVLTELVAKMREMKMDKTE Q6V7U7_LOCMI 298 0 RVLTELVAKMREMKMDKTE Q9U7D9_LOCMI 276 0 RVLTELVSKMKDMDMDKSE Q5HZR5_XENLA 356 0 RVLTELVSKMKDMDMDKSE RXRG_XENLA 356 0 RVLTELVAKMREMKMDKTE A7LIS4_NUCLP 330 0 RVLTELVAKMRDMKMDKTE Q8MX78_BRAFL 377 0 RVLTELVSKMKDMQMDKSE RXRG_CHICK 353 0 RVLTELVSKMKDMEMDKSE Q4KLS2_XENLA 357 0 RVLSELVAKMKEMKMDKTE C4N545_CRACN 282 0 RVLTELVSKMREMKLDLAE A1XQQ1_9CRUS 287 0 RVLSELVAKMKEMKIDKTE O76241_UCAPU 345 0 RVLSELVAKMKEMKIDKTE Q3I5Q1_GECLA 311 0 RVLTELVAKMRELRMDRTE A8R3X7_ORNMO 340 0 RVLAELVAKMRDMKMDKTE O61449_9ACAR 301 0 RVLSELVAKVKEMKMDKTE C3S7S0_CARMA 321 0 RVLTELVCKMRDMQMDKTE B3DG77_DANRE 311 14 RVLTELVCKMRDMQMDKTE RXRBB_DANRE 311 14 RVLTELVAKMREMNMDKTE A8J362_LIOAU 298 0 RVLSELVSKMREMKMDRTE Q9NG48_APIME 314 0 RVLTELIAKMRDMSMDRTE Q4H2U9_CIOIN 371 0 RVLSELVSKMREMKMDRTE Q07DL1_9HYME 314 0 RVLSELVSKMREMKMDRTE Q5MBF7_9HYME 314 0 RLLSELVNKMREMKMDKTE D2WID2_9ARAC 293 0 RVLTELVNKMRDMQMDKTE Q7SZG3_TAKRU 256 14 RVLSELVAKMKEMKMDKTE C4N546_CRACN 281 0 RVLSELVNKMKEMKMDKTE Q9NFY1_TENMO 295 0 RVLSELVAKMKEMKIDKTE Q3I5Q2_GECLA 316 0 RVLSELVAKMKEMKMDKTE A7BJ54_PENJP 324 0 RVLSELVAKMKEMKMDKTE C4N544_CRACN 287 0 RVLSELVNKMKEMKMDKTE A1JUG2_TRICA 294 0 RVLSELVAKVKEMKMDKTE C3S7R9_CARMA 282 0 RVLVELVSKMTEMCMDKTE C3VMP3_CALFI 291 0 RVLSELVNKMKEMRMDKTE Q4W6C8_LEPDE 271 0 RVLTEVVYKMREIRMDKTE Q52ZP0_9NEOP 292 0 RVLSELSLKMRHLRMDQAE Q8I1M8_9NEOP 290 0 RVLSELSLKMRSLRMDQAE USP_BOMMO 343 0 RVLSELALKMRSLPVDQAE Q6IVK1_PLOIN 295 0 RVLSELSLKMRSLRVDQAE B9UCQ5_HELAM 295 0 RVLSELSLKMRTLRMDQAE USP_CHOFU 352 0 RILSELSVKMKRLNLDRRE B4JM23_DROGR 408 0 RVLSELSLKMRALRFDQAE A9UEF7_SPOLT 348 0 RVLSELSLKMRALRVDQAE B2ZCQ5_SPOEX 293 0 RILSELSVKMKRLNLDRRE B3MYQ7_DROAN 392 0 RILSELSVKMKRLNLDRRE B4NBX1_DROWI 361 0 RVLSELSLKMRTLRMDQAE USP_MANSE 342 0 RILSELSVKMKRLNLDRRE B4M7S9_DROVI 379 0 RILSELSVKMKRLNLDRRE B3P8U7_DROER 387 0 RILSELSVKMKRLNLDRRE USP_DROME 388 0 RILSELSVKMKRLNLDRRE B4Q1J3_DROYA 389 0 RILSELSVKMKRLNLDRRE B4I9M8_DROSE 385 0 RILSELSVKMKRLNLDRRE B4L2K6_DROMO 364 0 RILSELSVKMKRLNLDRRE Q29J92_DROPS 367 0 RILTELVNQMRYLKMDKTE B3RPF4_TRIAD 215 0 RILSELSIKMKRLNIDRSE Q962I5_LUCCU 355 0 RILSELSVKMKRLDLDATE O45117_CHITE 441 0 RILCELAIKMKRLDVNRAE Q7PUT9_ANOGA 363 0 RILCELGIKMKRLDVTRAE Q0IGE0_AEDAE 373 0 RILCELGIKMKRLDVTRAE Q9GSG8_AEDAE 373 0 RILCELGIKMKRLDVTRAE Q9GSG7_AEDAE 348 0 RILCELGIKMKRLDVTRAE Q9U3Y3_AEDAL 374 0 RILCELGIKMKRLDVTRAE B0X9K6_CULQU 350 0 RILHELVARFRDLSLQRTE C4QN62_SCHMA 563 0 RILHELVARFRDLSLQRTE O97120_SCHMA 563 0 RETINOIDXR4 Length of motif = 20 Motif number = 4 Retinoid X receptor motif IV - 5 PCODE ST INT VEVLREKVYASLESYCKQKY B3DLT9_XENTR 339 22 VEVLREKVYASLESYCKQKY Q91840_XENLA 339 22 VEVLREKVYASLESYCKQKY Q28CI3_XENTR 376 22 VEALREKVYASLEAYCKQKY RXRA_XENLA 415 22 VEVLREKVYASLESYCKQKY Q6INZ0_XENLA 376 22 VEVLREKVYASLETYCKQKY A5D9P3_PIG 459 22 VEVLREKVYASLETYCKQKY RXRB_HUMAN 460 22 VEVLREKVYASLETYCKQKY RXRB_CANFA 460 22 VEVLREKVYASLETYCKQKY Q5STQ1_HUMAN 464 22 VEVLREKVYASLETYCKQKY Q5STP9_HUMAN 460 22 VEVLREKVYASLETYCKQKY Q0GFF5_PIG 459 22 VEVLREKVYASLETYCKQKY B7Z7J5_HUMAN 274 22 VEVLREKVYASLETYCKQKY A8MS99_HUMAN 364 22 VEVLREKVYASLETYCKQKY A6H7I6_BOVIN 459 22 VEVLREKVYASLETYCKQKY A5D9P5_PIG 341 22 VEILREKVYASLETYCKQKY Q3TWJ1_MOUSE 451 22 VEILREKVYASLETYCKQKY RXRB_MOUSE 447 22 VEILREKVYASLETYCKQKY Q8VCR0_MOUSE 341 22 VEILREKVYASLETYCKQKY Q6MGB3_RAT 378 22 VEALREKVYASLEAYCKHKY A2AJP1_MOUSE 394 22 VEALREKVYASLEAYCKHKY RXRA_RAT 394 22 VEALREKVYASLEAYCKHKY RXRA_MOUSE 394 22 VEALREKVYASLEAYCKHKY RXRA_HUMAN 389 22 VEALREKVYASLEAYCKHKY Q6LC96_MOUSE 366 22 VEALREKVYASLEAYCKHKY Q3UMU4_MOUSE 394 22 VEALREKVYASLEAYCKHKY Q2PFT8_MACFA 389 22 VEALREKVYASLEAYCKHKY Q2NL52_HUMAN 389 22 VEALREKVYASLEAYCKHKY Q0VJ96_RAT 394 22 VEALREKVYASLEAYCKHKY B3KY83_HUMAN 292 22 VEALREKVYASLEAYCKHKY RXRAA_DANRE 357 22 VELLREKVYASLESYCKQRY A7KE06_SALSA 357 22 VEVLREKVYACLESYCKQKY Q91613_XENLA 379 22 VELLREKVYASLESYCKHRY A7KIK4_SALSA 355 22 VEGLREKVYASLESYTKQKY B5TEI1_9PERC 378 22 VEALREKVYASLESYCKQKY Q2PK05_PETMA 391 22 VEALREKVYASLESYCKQKY Q2PK07_PETMA 405 22 VELLRERVYASLETYCKHKY Q589R1_ORYLA 354 22 VELLRERVYASLETYCKHKY Q8UUM6_ORYLA 354 22 VELLRERVYASLESYCKQKY C9WBQ7_PAROL 344 22 VEALRERVYASLEAYCKHKY RXRAB_DANRE 306 22 VEALREKVYASLEGYTKHNY RXRGA_DANRE 368 22 VEQLREKVYASLEEYCKQRY A7LIS3_NUCLP 366 22 VEQLREKVYASLEEYCKQRY Q66TQ0_9CAEN 357 22 VEAFREKVYASLESYCKQKY Q2PK06_PETMA 404 22 VEALREKVYASLETYTKQKY RXRGB_DANRE 379 22 VETLREKVYATLEAYTKQKY B2R7C0_HUMAN 390 22 VETLREKVYATLEAYTKQKY RXRG_PONAB 390 22 VETLREKVYATLEAYTKQKY RXRG_PIG 390 22 VETLREKVYATLEAYTKQKY RXRG_MOUSE 390 22 VETLREKVYATLEAYTKQKY RXRG_HUMAN 390 22 VETLREKVYATLEAYTKQKY RXRG_BOVIN 390 22 VETLREKVYATLEAYTKQKY Q6LDB2_9MURI 267 22 VETLREKVYATLEAYTKQKY D0G7E9_PIG 267 22 VETLREKVYATLEAYTKQKY RXRG_RAT 390 22 VELLREKVYAALEEYTRTTY Q4GZT9_BLAGE 363 22 VELLREKVYAALEEYTRTTY Q4GZU0_BLAGE 340 22 VEVLREKVYASLETYCKQKY Q32S23_BOVIN 459 22 VELLREKVYASLEAYCKQRY Q1LV96_DANRE 365 22 VELLREKVYASLEAYCKQRY RXRBA_DANRE 398 22 VEQLREKVYASLEEYTKSRY Q8T5C6_BIOGL 363 22 VEQLREKVYASLEEYTKTRY Q5I7G2_LYMST 363 22 VETLREKVYATLGAYTKQKY B6ZGT6_HUMAN 390 22 VELLREKVYAALEEYTRTTH Q6V7U7_LOCMI 339 22 VELLREKVYAALEEYTRTTH Q9U7D9_LOCMI 317 22 VEALREKVYATLESYTKQKY Q5HZR5_XENLA 397 22 VEALREKVYATLESYTKQKY RXRG_XENLA 397 22 VEQLREKVYASLEEYCKQRY A7LIS4_NUCLP 371 22 VESLREKVYASLEEYCKQQY Q8MX78_BRAFL 418 22 VESLREKVYATLEAYTKQKY RXRG_CHICK 394 22 VEALREKVYATLESYTKQKY Q4KLS2_XENLA 398 22 VEILREKVYAALEEYTRTSY C4N545_CRACN 323 22 VEALREKVYATLEEYTRTNY A1XQQ1_9CRUS 328 22 VEILREKVYAALEEYTRTTY O76241_UCAPU 386 22 VEILREKVYAALEEYTRTTY Q3I5Q1_GECLA 352 22 VEALRERVYAALEDHCRQQY A8R3X7_ORNMO 381 22 VEALREKVYAALEEHCRRHH O61449_9ACAR 342 22 VEILREKVYAALEESTRTTY C3S7S0_CARMA 362 22 VELLREKVYASLESYCKQKY B3DG77_DANRE 352 22 VELLREKVYASLESYCKQKY RXRBB_DANRE 352 22 VENLRERVYSALEDYCRQNY A8J362_LIOAU 339 22 VTLLREKIYGALEGYCRVAW Q9NG48_APIME 355 22 IETLREKVYASLEVYCKSKY Q4H2U9_CIOIN 412 22 VTLLREKIYAALEGYCRVAW Q07DL1_9HYME 355 22 VTLLREKIYAALEGYCRVAW Q5MBF7_9HYME 355 22 VTNLRDKVYTALEEYCKQMY D2WID2_9ARAC 334 22 VELLREKVYASLEAYCKQRY Q7SZG3_TAKRU 297 22 VEILREKVYAALEEYTRTSY C4N546_CRACN 322 22 VEMLREKIYGVLEEYTRTTH Q9NFY1_TENMO 336 22 VEILREKVYAALEEYTRTTY Q3I5Q2_GECLA 357 22 IEVLREKVYATLEEYTRTSY A7BJ54_PENJP 365 22 VEILREKVYAALEEYTRTSY C4N544_CRACN 328 22 VEMLREKIYGVLEEYTRTTH A1JUG2_TRICA 335 22 VEILREKVYAALEESTRTTY C3S7R9_CARMA 323 22 VEQLRERVYASLEEYTRSTH C3VMP3_CALFI 332 22 VEILREKIYENLEEYTRTTH Q4W6C8_LEPDE 312 22 VESLREKVFCVPDEHTRINY Q52ZP0_9NEOP 333 22 VEVLREKMYSCLDEYCRRVR Q8I1M8_9NEOP 331 22 VDVLREKMFLCLDEYCRRSR USP_BOMMO 384 22 VEVLREKMYSCLDEYCRRSR Q6IVK1_PLOIN 336 22 VEVLREKMFLCLDEYCRRSR B9UCQ5_HELAM 336 22 VDVLREKMFSCLDDYCRRSR USP_CHOFU 393 22 VELCREKVYACLDEHCRLEH B4JM23_DROGR 449 22 VELLREKMFSCLDEYVRRSR A9UEF7_SPOLT 389 22 VEILREKMFSCLDEYVRRSR B2ZCQ5_SPOEX 334 22 IEMCREKVYACLDEHCRQEH B3MYQ7_DROAN 433 22 IEMCREKVYACLDEHCRQEH B4NBX1_DROWI 402 22 VVVLREKMFSCLDEYVRRSR USP_MANSE 383 22 IELCREKVYACLDEHCRLEH B4M7S9_DROVI 420 22 IEMCREKVYACLDEHCRLEH B3P8U7_DROER 428 22 IEMCREKVYACLDEHCRLEH USP_DROME 429 22 IEMCREKVYACLDEHCRLEH B4Q1J3_DROYA 430 22 IEMCREKVYACLDEHCRLEH B4I9M8_DROSE 426 22 IEHCREKVYACLDEHCRLEH B4L2K6_DROMO 405 22 IEICREKVYACLDEHCRVEH Q29J92_DROPS 408 22 VEKYRELVYGALEAYVKKRF B3RPF4_TRIAD 256 22 VEVCREKIYACLDEHCRTEH Q962I5_LUCCU 396 22 IDLLRSRIYASLDEYCRQKH O45117_CHITE 482 22 IDQMREKIYACLDEYCKTQH Q7PUT9_ANOGA 404 22 IDGMREKIYACLDEHCKQQH Q0IGE0_AEDAE 414 22 IDGMREKIYACLDEHCKQQH Q9GSG8_AEDAE 414 22 IDGMREKIYACLDEHCKQQH Q9GSG7_AEDAE 389 22 DDGMREKIYACLDEHCKQQH Q9U3Y3_AEDAL 415 22 IDHMREKIYGCLDEYCKQQH B0X9K6_CULQU 391 22 VEAVREQLYSALHSYCTTNQ C4QN62_SCHMA 604 22 VEAVREQLYSALHSYCTTNQ O97120_SCHMA 604 22

User query: Display/Full Code "RETINOIDXR"