WORKLIST ENTRIES (1):
RETINOIDXR View alignment View Structure Retinoid X receptor signature
Type of fingerprint: COMPOUND with 4 elements
Links:
PRINTS; PR00047 STROIDFINGER; PR00398 STRDHORMONER
PRINTS; PR00521 ANDROGENR; PR01282 COUPTNFACTOR; PR01283 ECDYSTEROIDR
PRINTS; PR00528 GLCORTICOIDR; PR01284 NUCLEARECPTR; PR00350 VITAMINDR
PRINTS; PR00544 PROGESTRONER; PR01288 PROXISOMEPAR; PR00543 OESTROGENR
PRINTS; PR01293 RORNUCRECPTR; PR00546 THYROIDHORMR; PR02034 LIVERXRECPTR
INTERPRO; IPR000003
PDB; 1BY4 3Dinfo; 1DKF 3Dinfo; 1DSZ 3Dinfo; 1FBY 3Dinfo; 1H9U 3Dinfo; 1K74 3Dinfo
SCOP; 1BY4; 1DKF; 1DSZ; 1FBY; 1H9U; 1K74
CATH; 1BY4; 1DKF; 1DSZ; 1FBY; 1H9U; 1K74
MIM; 180245; 180246; 180247
Creation date 09-JUN-1996; UPDATE 17-AUG-2010
1. NUCLEAR RECEPTORS NOMENCLATURE COMMITTEE
A unified nomenclature system for the nuclear receptor superfamily.
CELL 97 161-163 (1999).
2. NISHIKAWA, J-I., KITAURA, M., IMAGAWA, M. AND NISHIHARA, T.
Vitamin D receptor contains multiple dimerisation interfaces that
are functionally different.
NUCLEIC ACIDS RES. 23(4) 606-611 (1995).
3. DE VOS, P., SCHMITT, J., VERHOEVEN, G. AND STUNNENBERG, G.
Human androgen receptor expressed in HeLa cells activates transcription
in vitro.
NUCLEIC ACIDS RES. 22(7) 1161-1166 (1994).
Steroid or nuclear hormone receptors (NRs) constitute an important super-
family of transcription regulators that are involved in widely diverse
physiological functions, including control of embryonic development, cell
differentiation and homeostasis [1]. Members of the superfamily include the
steroid hormone receptors and receptors for thyroid hormone, retinoids,
1,25-dihydroxy-vitamin D3 and a variety of other ligands. The proteins
function as dimeric molecules in nuclei to regulate the transcription of
target genes in a ligand-responsive manner [2,3]. In addition to C-terminal
ligand-binding domains, these nuclear receptors contain a highly-conserved,
N-terminal zinc-finger that mediates specific binding to target DNA
sequences, termed ligand-responsive elements. In the absence of ligand,
steroid hormone receptors are thought to be weakly associated with nuclear
components; hormone binding greatly increases receptor affinity.
NRs are extremely important in medical research, a large number of them
being implicated in diseases such as cancer, diabetes, hormone resistance
syndromes, etc. [1]. While several NRs act as ligand-inducible transcription
factors, many do not yet have a defined ligand and are accordingly termed
"orphan" receptors. During the last decade, more than 300 NRs have been
described, many of which are orphans, which cannot easily be named due to
current nomenclature confusions in the literature. However, a new system
has recently been introduced in an attempt to rationalise the increasingly
complex set of names used to describe superfamily members [1].
The retinoic acid (retinoid X) receptor consists of 3 functional and
structural domains: an N-terminal (modulatory) domain; a DNA binding domain
that mediates specific binding to target DNA sequences (ligand-responsive
elements); and a hormone binding domain. The N-terminal domain differs
between retinoic acid isoforms; the small highly-conserved DNA-binding
domain (~65 residues) occupies the central portion of the protein; and
the ligand binding domain lies at the receptor C-terminus.
RETINOIDXR is an 4-element fingerprint that provides a signature for the
retinoid X receptors. The fingerprint was derived from an initial alignment
of 31 sequences: motif 1 lies in the hinge region; and motifs 2-4 reside in
the ligand-binding domain. Five iterations on SPTR57.15_40.15f were required
to reach convergence, at which point a true set comprising 125 sequences was
identified. Several partial matches were also found, all of which are family
members that fail to make significant matches with one or more motifs.
SUMMARY INFORMATION
125 codes involving 4 elements
7 codes involving 3 elements
7 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
4| 125 125 125 125
3| 4 6 5 6
2| 4 2 2 6
--+---------------------
| 1 2 3 4
True positives..
B3DLT9_XENTR Q91840_XENLA Q28CI3_XENTR RXRA_XENLA
Q6INZ0_XENLA A5D9P3_PIG RXRB_HUMAN RXRB_CANFA
Q5STQ1_HUMAN Q5STP9_HUMAN Q0GFF5_PIG B7Z7J5_HUMAN
A8MS99_HUMAN A6H7I6_BOVIN A5D9P5_PIG Q3TWJ1_MOUSE
RXRB_MOUSE Q8VCR0_MOUSE Q6MGB3_RAT A2AJP1_MOUSE
RXRA_RAT RXRA_MOUSE RXRA_HUMAN Q6LC96_MOUSE
Q3UMU4_MOUSE Q2PFT8_MACFA Q2NL52_HUMAN Q0VJ96_RAT
B3KY83_HUMAN RXRAA_DANRE A7KE06_SALSA Q91613_XENLA
A7KIK4_SALSA B5TEI1_9PERC Q2PK05_PETMA Q2PK07_PETMA
Q589R1_ORYLA Q8UUM6_ORYLA C9WBQ7_PAROL RXRAB_DANRE
RXRGA_DANRE A7LIS3_NUCLP Q66TQ0_9CAEN Q2PK06_PETMA
RXRGB_DANRE B2R7C0_HUMAN RXRG_PONAB RXRG_PIG
RXRG_MOUSE RXRG_HUMAN RXRG_BOVIN Q6LDB2_9MURI
D0G7E9_PIG RXRG_RAT Q4GZT9_BLAGE Q4GZU0_BLAGE
Q32S23_BOVIN Q1LV96_DANRE RXRBA_DANRE Q8T5C6_BIOGL
Q5I7G2_LYMST B6ZGT6_HUMAN Q6V7U7_LOCMI Q9U7D9_LOCMI
Q5HZR5_XENLA RXRG_XENLA A7LIS4_NUCLP Q8MX78_BRAFL
RXRG_CHICK Q4KLS2_XENLA C4N545_CRACN A1XQQ1_9CRUS
O76241_UCAPU Q3I5Q1_GECLA A8R3X7_ORNMO O61449_9ACAR
C3S7S0_CARMA B3DG77_DANRE RXRBB_DANRE A8J362_LIOAU
Q9NG48_APIME Q4H2U9_CIOIN Q07DL1_9HYME Q5MBF7_9HYME
D2WID2_9ARAC Q7SZG3_TAKRU C4N546_CRACN Q9NFY1_TENMO
Q3I5Q2_GECLA A7BJ54_PENJP C4N544_CRACN A1JUG2_TRICA
C3S7R9_CARMA C3VMP3_CALFI Q4W6C8_LEPDE Q52ZP0_9NEOP
Q8I1M8_9NEOP USP_BOMMO Q6IVK1_PLOIN B9UCQ5_HELAM
USP_CHOFU B4JM23_DROGR A9UEF7_SPOLT B2ZCQ5_SPOEX
B3MYQ7_DROAN B4NBX1_DROWI USP_MANSE B4M7S9_DROVI
B3P8U7_DROER USP_DROME B4Q1J3_DROYA B4I9M8_DROSE
B4L2K6_DROMO Q29J92_DROPS B3RPF4_TRIAD Q962I5_LUCCU
O45117_CHITE Q7PUT9_ANOGA Q0IGE0_AEDAE Q9GSG8_AEDAE
Q9GSG7_AEDAE Q9U3Y3_AEDAL B0X9K6_CULQU C4QN62_SCHMA
O97120_SCHMA
Subfamily: Codes involving 3 elements
Subfamily True positives..
Q4RIV7_TETNG O61448_9ACAR Q3I5Q0_GECLA Q3I5P9_GECLA
Q7SIF6_HELVI B4R336_DROSI A9XG30_BRUMA
Subfamily: Codes involving 2 elements
Subfamily True positives..
C9J6S9_HUMAN Q8ST32_DIRIM C4QH22_SCHMA Q9U9R6_SCHMA
O96562_TRICY Q9Y1J4_SCHMA A8P2K0_BRUMA
PROTEIN TITLES
B3DLT9_XENTR Rxrb protein - Xenopus tropicalis
Q91840_XENLA Retinoid X receptor beta - Xenopus laevis
Q28CI3_XENTR Retinoic acid receptor RXR-beta (Retinoid X receptor beta) -
RXRA_XENLA Retinoic acid receptor RXR-alpha - Xenopus laevis
Q6INZ0_XENLA Rxrb protein - Xenopus laevis
A5D9P3_PIG Retinoid X receptor, beta - Sus scrofa
RXRB_HUMAN Retinoic acid receptor RXR-beta - Homo sapiens
RXRB_CANFA Retinoic acid receptor RXR-beta - Canis familiaris
Q5STQ1_HUMAN Retinoid X receptor, beta - Homo sapiens
Q5STP9_HUMAN Retinoid X receptor, beta - Homo sapiens
Q0GFF5_PIG Retinoid X receptor beta - Sus scrofa
B7Z7J5_HUMAN cDNA FLJ61673, highly similar to Retinoic acid receptor RXR-
A8MS99_HUMAN Putative uncharacterized protein RXRB - Homo sapiens
A6H7I6_BOVIN Retinoid X receptor, beta - Bos taurus
A5D9P5_PIG Retinoid X receptor, beta - Sus scrofa
Q3TWJ1_MOUSE Putative uncharacterized protein - Mus musculus
RXRB_MOUSE Retinoic acid receptor RXR-beta - Mus musculus
Q8VCR0_MOUSE Putative uncharacterized protein - Mus musculus
Q6MGB3_RAT Retinoid X receptor beta - Rattus norvegicus
A2AJP1_MOUSE Retinoid X receptor alpha - Mus musculus
RXRA_RAT Retinoic acid receptor RXR-alpha - Rattus norvegicus
RXRA_MOUSE Retinoic acid receptor RXR-alpha - Mus musculus
RXRA_HUMAN Retinoic acid receptor RXR-alpha - Homo sapiens
Q6LC96_MOUSE RXR alpha 2 - Mus musculus
Q3UMU4_MOUSE Putative uncharacterized protein - Mus musculus
Q2PFT8_MACFA Putative uncharacterized protein - Macaca fascicularis
Q2NL52_HUMAN Retinoid X receptor, alpha - Homo sapiens
Q0VJ96_RAT Retinoid X receptor alpha - Rattus norvegicus
B3KY83_HUMAN cDNA FLJ16020 fis, clone BRAMY2003287, highly similar to RET
RXRAA_DANRE Retinoic acid receptor RXR-alpha-A - Danio rerio
A7KE06_SALSA RXR - Salmo salar
Q91613_XENLA XRXR beta - Xenopus laevis
A7KIK4_SALSA RXRB - Salmo salar
B5TEI1_9PERC Retinoid X receptor gamma - Sebastiscus marmoratus
Q2PK05_PETMA Retinoid X receptor 3 - Petromyzon marinus
Q2PK07_PETMA Retinoid X receptor 1 - Petromyzon marinus
Q589R1_ORYLA RXRB protein - Oryzias latipes
Q8UUM6_ORYLA RXRB protein - Oryzias latipes
C9WBQ7_PAROL Retinoid X receptor beta - Paralichthys olivaceus
RXRAB_DANRE Retinoic acid receptor RXR-alpha-B - Danio rerio
RXRGA_DANRE Retinoic acid receptor RXR-gamma-A - Danio rerio
A7LIS3_NUCLP Retinoid X receptor a isoform - Nucella lapillus
Q66TQ0_9CAEN Retinoid X receptor - Thais clavigera
Q2PK06_PETMA Retinoid X receptor 2 - Petromyzon marinus
RXRGB_DANRE Retinoic acid receptor RXR-gamma-B - Danio rerio
B2R7C0_HUMAN cDNA, FLJ93371, highly similar to Homo sapiens retinoid X re
RXRG_PONAB Retinoic acid receptor RXR-gamma - Pongo abelii
RXRG_PIG Retinoic acid receptor RXR-gamma - Sus scrofa
RXRG_MOUSE Retinoic acid receptor RXR-gamma - Mus musculus
RXRG_HUMAN Retinoic acid receptor RXR-gamma - Homo sapiens
RXRG_BOVIN Retinoic acid receptor RXR-gamma - Bos taurus
Q6LDB2_9MURI Retinoid-X receptor-gamma isoform 2 - Mus sp.
D0G7E9_PIG Retinoid X receptor, gamma - Sus scrofa
RXRG_RAT Retinoic acid receptor RXR-gamma - Rattus norvegicus
Q4GZT9_BLAGE Retinoid X receptor - Blattella germanica
Q4GZU0_BLAGE Retinoid X receptor - Blattella germanica
Q32S23_BOVIN Retinoid X receptor beta - Bos taurus
Q1LV96_DANRE Retinoid x receptor, beta - Danio rerio
RXRBA_DANRE Retinoic acid receptor RXR-beta-A - Danio rerio
Q8T5C6_BIOGL RXR-like protein - Biomphalaria glabrata
Q5I7G2_LYMST Retinoid X receptor - Lymnaea stagnalis
B6ZGT6_HUMAN Retinoid X receptor-gamma - Homo sapiens
Q6V7U7_LOCMI Nuclear receptor RXR-l - Locusta migratoria
Q9U7D9_LOCMI RXR - Locusta migratoria
Q5HZR5_XENLA LOC496325 protein - Xenopus laevis
RXRG_XENLA Retinoic acid receptor RXR-gamma - Xenopus laevis
A7LIS4_NUCLP Retinoid X receptor b isoform - Nucella lapillus
Q8MX78_BRAFL Nuclear hormone receptor RXR - Branchiostoma floridae
RXRG_CHICK Retinoic acid receptor RXR-gamma - Gallus gallus
Q4KLS2_XENLA MGC115510 protein - Xenopus laevis
C4N545_CRACN Retinoid X receptor isoform 2 - Crangon crangon
A1XQQ1_9CRUS Retinoid X receptor-like protein - Daphnia magna
O76241_UCAPU Retinoid X receptor homolog - Uca pugilator
Q3I5Q1_GECLA RXRb nuclear hormone receptor - Gecarcinus lateralis
A8R3X7_ORNMO Retinoid X receptor - Ornithodoros moubata
O61449_9ACAR Retinoid X receptor - Amblyomma americanum
C3S7S0_CARMA Retinoid X receptor splice variant RXR-II - Carcinus maenas
B3DG77_DANRE Retinoid x receptor, beta b - Danio rerio
RXRBB_DANRE Retinoic acid receptor RXR-beta-B - Danio rerio
A8J362_LIOAU Ultraspiracle - Liocheles australasiae
Q9NG48_APIME Ultraspiracle protein - Apis mellifera
Q4H2U9_CIOIN Nuclear receptor - Ciona intestinalis
Q07DL1_9HYME Ultraspiracle protein - Scaptotrigona depilis
Q5MBF7_9HYME Ultraspiracle - Melipona scutellaris
D2WID2_9ARAC Retinoid x receptor - Agelena silvatica
Q7SZG3_TAKRU Retinoid X receptor beta - Takifugu rubripes
C4N546_CRACN Retinoid X receptor isoform 3 - Crangon crangon
Q9NFY1_TENMO USP protein - Tenebrio molitor
Q3I5Q2_GECLA RXRa nuclear hormone receptor - Gecarcinus lateralis
A7BJ54_PENJP Retinoid X receptor - Penaeus japonicus
C4N544_CRACN Retinoid X receptor isoform 1 - Crangon crangon
A1JUG2_TRICA Ultraspiracle nuclear receptor - Tribolium castaneum
C3S7R9_CARMA Retinoid X receptor splice variant RXR-I - Carcinus maenas
C3VMP3_CALFI Putative retinoid X receptor - Calanus finmarchicus
Q4W6C8_LEPDE Ultraspiracle - Leptinotarsa decemlineata
Q52ZP0_9NEOP Nuclear receptor usp/RXR - Xenos pecki
Q8I1M8_9NEOP Ultraspiracle - Chilo suppressalis
USP_BOMMO Protein ultraspiracle homolog - Bombyx mori
Q6IVK1_PLOIN USP - Plodia interpunctella
B9UCQ5_HELAM Ultraspiracle isoform 1 - Helicoverpa armigera
USP_CHOFU Protein ultraspiracle homolog - Choristoneura fumiferana
B4JM23_DROGR GH24408 - Drosophila grimshawi
A9UEF7_SPOLT Ultraspiracle - Spodoptera litura
B2ZCQ5_SPOEX Ultraspiracle protein - Spodoptera exigua
B3MYQ7_DROAN GF21986 - Drosophila ananassae
B4NBX1_DROWI GK25746 - Drosophila willistoni
USP_MANSE Protein ultraspiracle homolog - Manduca sexta
B4M7S9_DROVI GJ16389 - Drosophila virilis
B3P8U7_DROER GG12659 - Drosophila erecta
USP_DROME Protein ultraspiracle - Drosophila melanogaster
B4Q1J3_DROYA GE16988 - Drosophila yakuba
B4I9M8_DROSE GM18927 - Drosophila sechellia
B4L2K6_DROMO GI15428 - Drosophila mojavensis
Q29J92_DROPS GA18146 - Drosophila pseudoobscura pseudoobscura
B3RPF4_TRIAD Putative uncharacterized protein - Trichoplax adhaerens
Q962I5_LUCCU Ultraspiracle protein - Lucilia cuprina
O45117_CHITE Ultraspiracle - Chironomus tentans
Q7PUT9_ANOGA AGAP002095-PA - Anopheles gambiae
Q0IGE0_AEDAE Retinoid x receptor (Rxr) - Aedes aegypti
Q9GSG8_AEDAE Ultraspiracle isoform-A - Aedes aegypti
Q9GSG7_AEDAE Ultraspiracle isoform-B - Aedes aegypti
Q9U3Y3_AEDAL Ultraspiracle - Aedes albopictus
B0X9K6_CULQU Retinoid x receptor - Culex quinquefasciatus
C4QN62_SCHMA Retinoic acid receptor RXR - Schistosoma mansoni
O97120_SCHMA Retinoic acid receptor RXR - Schistosoma mansoni
Q4RIV7_TETNG Chromosome undetermined SCAF15041, whole genome shotgun sequ
O61448_9ACAR Retinoid X receptor - Amblyomma americanum
Q3I5Q0_GECLA RXRc nuclear hormone receptor - Gecarcinus lateralis
Q3I5P9_GECLA RXRd nuclear hormone receptor - Gecarcinus lateralis
Q7SIF6_HELVI Gene regulation protein - Heliothis virescens
B4R336_DROSI GD16395 - Drosophila simulans
A9XG30_BRUMA RXR receptor - Brugia malayi
C9J6S9_HUMAN Putative uncharacterized protein ENSP00000399455 - Homo sapi
Q8ST32_DIRIM Nuclear receptor RXR - Dirofilaria immitis
C4QH22_SCHMA Retinoid-x-receptor (RXR) - Schistosoma mansoni
Q9U9R6_SCHMA Retinoid-x-receptor - Schistosoma mansoni
O96562_TRICY Retinoic acid X receptor - Tripedalia cystophora
Q9Y1J4_SCHMA Retinoid X receptor RXR-2 - Schistosoma mansoni
A8P2K0_BRUMA Nuclear receptor RXR, putative - Brugia malayi
SCAN HISTORY
SPTR57.15_40.15f 5 250 NSINGLE
INITIAL MOTIF SETS
RETINOIDXR1 Length of motif = 14 Motif number = 1
Retinoid X receptor motif I - 1
PCODE ST INT
EAVQEERQRGKDRN RXRA_HUMAN 203 203
EAVQEERQRGKDRN RXRA_RAT 208 208
EAVQEERQRGKDRN RXRA_MOUSE 208 208
EAVQEERQRGKERN RXRA_XENLA 229 229
EAVQEERQGSRERS RXRG_CHICK 211 211
EAVQEERQRSRERA RXRG_PONAB 207 207
EAVQEERQRSRERA RXRG_HUMAN 207 207
EAVQEERQRSRERA RXRG_MOUSE 207 207
EAVQEERQRSRERA RXRG_PIG 207 207
EAVQEERQRSRERA RXRG_RAT 207 207
EAVQEERQRSRERA RXRG_BOVIN 207 207
EAVQEERQRGKDKD RXRB_CANFA 273 273
EAVQEERQRGKDKD RXRB_HUMAN 273 273
EAVQEERQRGKDKD Q5STQ1_HUMAN 273 273
EAVQEERHGGKDKD Q32S23_BOVIN 272 272
EAVQEERQRGKDKD RXRB_MOUSE 260 260
EAVQEERQRGKDKD Q3TWJ1_MOUSE 260 260
EAVQEERQRSREKS RXRG_XENLA 214 214
RSVQEERQRNKERD RXRBA_DANRE 201 201
EAVQEERQRGKEKS RXRGB_DANRE 196 196
EAVQEERQKNKERD RXRBB_DANRE 158 158
EAVQEERQRAKERS RXRAA_DANRE 171 171
EAVQEERQRGRERS RXRGA_DANRE 185 185
EAVQEERQRGKDKD Q6MGB3_RAT 191 191
EAVQEERQRGKDKD Q8VCR0_MOUSE 150 150
EAVQEERQRAKERS RXRAB_DANRE 122 122
EAVQEERQRVKEKG Q66TQ0_9CAEN 179 179
EAVQEERQRNKEKG A1XQQ1_9CRUS 150 150
SAVQEERQRTKDRN A8J362_LIOAU 161 161
EAVQEERQRTKERG A8R3X7_ORNMO 172 172
EAVQEERQRGKDKD B7Z7J5_HUMAN 83 83
RETINOIDXR2 Length of motif = 26 Motif number = 2
Retinoid X receptor motif II - 1
PCODE ST INT
DGILLATGLHVHRNSAHSAGVGAIFD RXRA_HUMAN 322 105
DGILLATGLHVHRNSAHSAGVGAIFD RXRA_RAT 327 105
DGILLATGLHVHRNSAHSAGVGAIFD RXRA_MOUSE 327 105
DGILLATGLHVHRNSAHSAGVGAIFD RXRA_XENLA 348 105
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_CHICK 327 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_PONAB 323 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_HUMAN 323 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_MOUSE 323 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_PIG 323 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_RAT 323 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_BOVIN 323 102
DGILLATGLHVHRNSAHSAGVGAIFD RXRB_CANFA 393 106
DGILLATGLHVHRNSAHSAGVGAIFD RXRB_HUMAN 393 106
DGILLATGLHVHRNSAHSAGVGAIFD Q5STQ1_HUMAN 393 106
DGILLATGLHVHRNSAHSAGVGAIFD Q32S23_BOVIN 392 106
DGILLATGLHVHRNSAHSAGVGAIFD RXRB_MOUSE 380 106
DGILLATGLHVHRNSAHSAGVGAIFD Q3TWJ1_MOUSE 380 106
DGILLATGLHVHRSSAHNAGVGSIFD RXRG_XENLA 330 102
DGILLATGLHVHRNSAHSAGVGAIFD RXRBA_DANRE 317 102
DGILLGTGLHVHRSSAHSAGVGSIFN RXRGB_DANRE 312 102
DEILLATGLHVPKESTHNLGVEAFFD RXRBB_DANRE 271 99
DGILLATGLHVHRNSAHSAGVGAIFD RXRAA_DANRE 290 105
DGILLATGLHVHRSSAHSAGVGSIFD RXRGA_DANRE 301 102
DGILLATGLHVHRNSAHSAGVGAIFD Q6MGB3_RAT 311 106
DGILLATGLHVHRNSAHSAGVGAIFD Q8VCR0_MOUSE 270 106
DGILLATGLHVHRNSAHTAGVGAIFD RXRAB_DANRE 239 103
DGILLATGLHVHRSSAHQAGVGTIFD Q66TQ0_9CAEN 290 97
DGIVLATGLVIHRNSAHQAGVGSIFD A1XQQ1_9CRUS 261 97
DGIVLASGLIVHRNSAHGAGVGTIFD A8J362_LIOAU 272 97
DGIVLATGLVVQRHSAHSAGVGAIFD A8R3X7_ORNMO 314 128
DGILLATGLHVHRNSAHSAGVGAIFD B7Z7J5_HUMAN 203 106
RETINOIDXR3 Length of motif = 19 Motif number = 3
Retinoid X receptor motif III - 1
PCODE ST INT
RVLTELVSKMRDMQMDKTE RXRA_HUMAN 348 0
RVLTELVSKMRDMQMDKTE RXRA_RAT 353 0
RVLTELVSKMRDMQMDKTE RXRA_MOUSE 353 0
RVLTELVSKMRDMQMDKTE RXRA_XENLA 374 0
RVLTELVSKMKDMQMDKSE RXRG_CHICK 353 0
RVLTELVSKMKDMQMDKSE RXRG_PONAB 349 0
RVLTELVSKMKDMQMDKSE RXRG_HUMAN 349 0
RVLTELVSKMKDMQMDKSE RXRG_MOUSE 349 0
RVLTELVSKMKDMQMDKSE RXRG_PIG 349 0
RVLTELVSKMKDMRMDKSE RXRG_RAT 349 0
RVLTELVSKMKDMQMDKSE RXRG_BOVIN 349 0
RVLTELVSKMRDMRMDKTE RXRB_CANFA 419 0
RVLTELVSKMRDMRMDKTE RXRB_HUMAN 419 0
RVLTELVSKMRDMRMDKTE Q5STQ1_HUMAN 423 4
RVLTELVSKMRDMRMDKTE Q32S23_BOVIN 418 0
RVLTELVSKMRDMRMDKTE RXRB_MOUSE 406 0
RVLTELVSKMRDMRMDKTE Q3TWJ1_MOUSE 410 4
RVLTELVSKMKDMDMDKSE RXRG_XENLA 356 0
RVLTELVSKMRDMQMDKTE RXRBA_DANRE 357 14
RVLTELVSKMKDMQMDKTE RXRGB_DANRE 338 0
RVLTELVCKMRDMQMDKTE RXRBB_DANRE 311 14
RVLTELVSKMRDMQMDKTE RXRAA_DANRE 316 0
RVLTELVSKMRDMQMDKTE RXRGA_DANRE 327 0
RVLTELVSKMRDMRMDKTE Q6MGB3_RAT 337 0
RVLTELVSKMRDMRMDKTE Q8VCR0_MOUSE 300 4
RVLTELVSKMRDMQMDKTE RXRAB_DANRE 265 0
RVLTELVAKMREMKMDKTE Q66TQ0_9CAEN 316 0
RVLTELVSKMREMKLDLAE A1XQQ1_9CRUS 287 0
RVLTELVAKMREMNMDKTE A8J362_LIOAU 298 0
RVLTELVAKMRELRMDRTE A8R3X7_ORNMO 340 0
RVLTELVSKMRDMRMDKTE B7Z7J5_HUMAN 233 4
RETINOIDXR4 Length of motif = 20 Motif number = 4
Retinoid X receptor motif IV - 1
PCODE ST INT
VEALREKVYASLEAYCKHKY RXRA_HUMAN 389 22
VEALREKVYASLEAYCKHKY RXRA_RAT 394 22
VEALREKVYASLEAYCKHKY RXRA_MOUSE 394 22
VEALREKVYASLEAYCKQKY RXRA_XENLA 415 22
VESLREKVYATLEAYTKQKY RXRG_CHICK 394 22
VETLREKVYATLEAYTKQKY RXRG_PONAB 390 22
VETLREKVYATLEAYTKQKY RXRG_HUMAN 390 22
VETLREKVYATLEAYTKQKY RXRG_MOUSE 390 22
VETLREKVYATLEAYTKQKY RXRG_PIG 390 22
VETLREKVYATLEAYTKQKY RXRG_RAT 390 22
VETLREKVYATLEAYTKQKY RXRG_BOVIN 390 22
VEVLREKVYASLETYCKQKY RXRB_CANFA 460 22
VEVLREKVYASLETYCKQKY RXRB_HUMAN 460 22
VEVLREKVYASLETYCKQKY Q5STQ1_HUMAN 464 22
VEVLREKVYASLETYCKQKY Q32S23_BOVIN 459 22
VEILREKVYASLETYCKQKY RXRB_MOUSE 447 22
VEILREKVYASLETYCKQKY Q3TWJ1_MOUSE 451 22
VEALREKVYATLESYTKQKY RXRG_XENLA 397 22
VELLREKVYASLEAYCKQRY RXRBA_DANRE 398 22
VEALREKVYASLETYTKQKY RXRGB_DANRE 379 22
VELLREKVYASLESYCKQKY RXRBB_DANRE 352 22
VEALREKVYASLEAYCKHKY RXRAA_DANRE 357 22
VEALREKVYASLEGYTKHNY RXRGA_DANRE 368 22
VEILREKVYASLETYCKQKY Q6MGB3_RAT 378 22
VEILREKVYASLETYCKQKY Q8VCR0_MOUSE 341 22
VEALRERVYASLEAYCKHKY RXRAB_DANRE 306 22
VEQLREKVYASLEEYCKQRY Q66TQ0_9CAEN 357 22
VEALREKVYATLEEYTRTNY A1XQQ1_9CRUS 328 22
VENLRERVYSALEDYCRQNY A8J362_LIOAU 339 22
VEALRERVYAALEDHCRQQY A8R3X7_ORNMO 381 22
VEVLREKVYASLETYCKQKY B7Z7J5_HUMAN 274 22
FINAL MOTIF SETS
RETINOIDXR1 Length of motif = 14 Motif number = 1
Retinoid X receptor motif I - 5
PCODE ST INT
EAVQEERQRGKERD B3DLT9_XENTR 159 159
EAVQEERQRGKERD Q91840_XENLA 159 159
EAVQEERQRGKERD Q28CI3_XENTR 196 196
EAVQEERQRGKERN RXRA_XENLA 229 229
EAVQEERQRGRERD Q6INZ0_XENLA 196 196
EAVQEERQRGKDKD A5D9P3_PIG 272 272
EAVQEERQRGKDKD RXRB_HUMAN 273 273
EAVQEERQRGKDKD RXRB_CANFA 273 273
EAVQEERQRGKDKD Q5STQ1_HUMAN 273 273
EAVQEERQRGKDKD Q5STP9_HUMAN 273 273
EAVQEERQRGKDKD Q0GFF5_PIG 272 272
EAVQEERQRGKDKD B7Z7J5_HUMAN 83 83
EAVQEERQRGKDKD A8MS99_HUMAN 177 177
EAVQEERQRGKDKD A6H7I6_BOVIN 272 272
EAVQEERQRGKDKD A5D9P5_PIG 150 150
EAVQEERQRGKDKD Q3TWJ1_MOUSE 260 260
EAVQEERQRGKDKD RXRB_MOUSE 260 260
EAVQEERQRGKDKD Q8VCR0_MOUSE 150 150
EAVQEERQRGKDKD Q6MGB3_RAT 191 191
EAVQEERQRGKDRN A2AJP1_MOUSE 208 208
EAVQEERQRGKDRN RXRA_RAT 208 208
EAVQEERQRGKDRN RXRA_MOUSE 208 208
EAVQEERQRGKDRN RXRA_HUMAN 203 203
EAVQEERQRGKDRN Q6LC96_MOUSE 180 180
EAVQEERQRGKDRN Q3UMU4_MOUSE 208 208
EAVQEERQRGKDRN Q2PFT8_MACFA 203 203
EAVQEERQRGKDRN Q2NL52_HUMAN 203 203
EAVQEERQRGKDRN Q0VJ96_RAT 208 208
EAVQEERQRGKDRN B3KY83_HUMAN 106 106
EAVQEERQRAKERS RXRAA_DANRE 171 171
EAVQEERQRNKERE A7KE06_SALSA 158 158
EAVQEERQRGRERD Q91613_XENLA 196 196
EAVQEERQRNKERE A7KIK4_SALSA 158 158
EAVQEERQRGRERG B5TEI1_9PERC 195 195
EAVQEERQRGRERE Q2PK05_PETMA 197 197
EAVQEERQRGRERE Q2PK07_PETMA 211 211
EAVQEERQRNKERE Q589R1_ORYLA 161 161
EAVQEERQRNKERE Q8UUM6_ORYLA 161 161
EAVQEERQRNKERE C9WBQ7_PAROL 161 161
EAVQEERQRAKERS RXRAB_DANRE 122 122
EAVQEERQRGRERS RXRGA_DANRE 185 185
EAVQEERQRVKEKG A7LIS3_NUCLP 188 188
EAVQEERQRVKEKG Q66TQ0_9CAEN 179 179
EAVQEERQRGRERE Q2PK06_PETMA 211 211
EAVQEERQRGKEKS RXRGB_DANRE 196 196
EAVQEERQRSRERA B2R7C0_HUMAN 207 207
EAVQEERQRSRERA RXRG_PONAB 207 207
EAVQEERQRSRERA RXRG_PIG 207 207
EAVQEERQRSRERA RXRG_MOUSE 207 207
EAVQEERQRSRERA RXRG_HUMAN 207 207
EAVQEERQRSRERA RXRG_BOVIN 207 207
EAVQEERQRSRERA Q6LDB2_9MURI 84 84
EAVQEERQRSRERA D0G7E9_PIG 84 84
EAVQEERQRSRERA RXRG_RAT 207 207
EAVQEERQRTKERD Q4GZT9_BLAGE 163 163
EAVQEERQRTKERD Q4GZU0_BLAGE 163 163
EAVQEERHGGKDKD Q32S23_BOVIN 272 272
RSVQEERQRNKERD Q1LV96_DANRE 168 168
RSVQEERQRNKERD RXRBA_DANRE 201 201
EAVQEERQRVKEKG Q8T5C6_BIOGL 185 185
EAVQEERQRVKEKG Q5I7G2_LYMST 185 185
EAVQEERQRSRERA B6ZGT6_HUMAN 207 207
EAVQEERQRTKERD Q6V7U7_LOCMI 156 156
EAVQEERQRTKERD Q9U7D9_LOCMI 156 156
EAVQEERQRSREKS Q5HZR5_XENLA 214 214
EAVQEERQRSREKS RXRG_XENLA 214 214
TAVQEERQRVKEKG A7LIS4_NUCLP 193 193
SAVQEERQRSKEGK Q8MX78_BRAFL 240 240
EAVQEERQGSRERS RXRG_CHICK 211 211
EAVQEERHRSREKS Q4KLS2_XENLA 215 215
EAVQEERQRTKGDK C4N545_CRACN 145 145
EAVQEERQRNKEKG A1XQQ1_9CRUS 150 150
EAVQEERQRTKGDK O76241_UCAPU 174 174
EAVQEERQRTKGDK Q3I5Q1_GECLA 140 140
EAVQEERQRTKERG A8R3X7_ORNMO 172 172
EAVQEERQRAKDRN O61449_9ACAR 150 150
EAVQEERQRTKGDK C3S7S0_CARMA 142 142
EAVQEERQKNKERD B3DG77_DANRE 158 158
EAVQEERQKNKERD RXRBB_DANRE 158 158
SAVQEERQRTKDRN A8J362_LIOAU 161 161
EAVQEERQRTKERD Q9NG48_APIME 178 178
EAVQEERQKNREQD Q4H2U9_CIOIN 237 237
GAVQEERQRTKERD Q07DL1_9HYME 178 178
EAVHEERQRTKERD Q5MBF7_9HYME 178 178
EAVQEERQRNRERS D2WID2_9ARAC 163 163
EAVQEERQRNRERE Q7SZG3_TAKRU 102 102
EAVQEERQRTKGDK C4N546_CRACN 145 145
EAVQEERQRTKDRD Q9NFY1_TENMO 155 155
GAVEGERQRTKGDK Q3I5Q2_GECLA 145 145
GAAEEERQRTKGDK A7BJ54_PENJP 188 188
GGIEEERQRTKGDK C4N544_CRACN 150 150
EAVQEERQRTKDRD A1JUG2_TRICA 154 154
QTFQEERQRTKGDK C3S7R9_CARMA 145 145
EAVQEERQRGSRGD C3VMP3_CALFI 149 149
EAVQEERQRTKDRD Q4W6C8_LEPDE 136 136
EAVQEERQRNKDRE Q52ZP0_9NEOP 153 153
EAVQEERQRAARGT Q8I1M8_9NEOP 128 128
EAVQEERQRAARRT USP_BOMMO 182 182
EAVQEERQRAARGT Q6IVK1_PLOIN 129 129
EAVQEERQRGARGT B9UCQ5_HELAM 129 129
EAVQEERQRNARGA USP_CHOFU 187 187
EAVQEERQRGARNT B4JM23_DROGR 185 185
EAVQEERQRAARGA A9UEF7_SPOLT 182 182
EAVQEERQRAARGT B2ZCQ5_SPOEX 129 129
EAVQEERQRGARNS B3MYQ7_DROAN 174 174
EAVQEERQRGARAS B4NBX1_DROWI 159 159
EAVQEERQRAARGT USP_MANSE 181 181
EAVQEERQRGARTS B4M7S9_DROVI 166 166
EAVQEERQRGARNA B3P8U7_DROER 171 171
EAVQEERQRGARNA USP_DROME 172 172
EAVQEERQRGARNA B4Q1J3_DROYA 172 172
EAVQEERQRGARNA B4I9M8_DROSE 169 169
EAVQEERQRGARAS B4L2K6_DROMO 155 155
EAVQEERQRGARSA Q29J92_DROPS 161 161
EAVQEERVKNSTPT B3RPF4_TRIAD 69 69
EAVQEERQRGTRAA Q962I5_LUCCU 158 158
EAVQEERQRGGKSQ O45117_CHITE 265 265
EAVQEERQRSSKFS Q7PUT9_ANOGA 193 193
EAVQEERQRSSKFS Q0IGE0_AEDAE 206 206
EAVQEERQRSSKFS Q9GSG8_AEDAE 206 206
EAVQEERQRSSKFS Q9GSG7_AEDAE 181 181
EAVQEERQRSSKFS Q9U3Y3_AEDAL 207 207
EAVQEERQRSSKFS B0X9K6_CULQU 183 183
EAVQEERHRQPSSN C4QN62_SCHMA 339 339
EAVQEERHRQPSSN O97120_SCHMA 339 339
RETINOIDXR2 Length of motif = 26 Motif number = 2
Retinoid X receptor motif II - 5
PCODE ST INT
DGILLATGLHVHRNSAHSAGVGAIFD B3DLT9_XENTR 272 99
DGILLATGLHVHRNSAHSAGVGAIFD Q91840_XENLA 272 99
DGILLATGLHVHRNSAHSAGVGAIFD Q28CI3_XENTR 309 99
DGILLATGLHVHRNSAHSAGVGAIFD RXRA_XENLA 348 105
DGILLATGLHVHRNSAHSAGVGAIFD Q6INZ0_XENLA 309 99
DGILLATGLHVHRNSAHSAGVGAIFD A5D9P3_PIG 392 106
DGILLATGLHVHRNSAHSAGVGAIFD RXRB_HUMAN 393 106
DGILLATGLHVHRNSAHSAGVGAIFD RXRB_CANFA 393 106
DGILLATGLHVHRNSAHSAGVGAIFD Q5STQ1_HUMAN 393 106
DGILLATGLHVHRNSAHSAGVGAIFD Q5STP9_HUMAN 393 106
DGILLATGLHVHRNSAHSAGVGAIFD Q0GFF5_PIG 392 106
DGILLATGLHVHRNSAHSAGVGAIFD B7Z7J5_HUMAN 203 106
DGILLATGLHVHRNSAHSAGVGAIFD A8MS99_HUMAN 297 106
DGILLATGLHVHRNSAHSAGVGAIFD A6H7I6_BOVIN 392 106
DGILLATGLHVHRNSAHSAGVGAIFD A5D9P5_PIG 270 106
DGILLATGLHVHRNSAHSAGVGAIFD Q3TWJ1_MOUSE 380 106
DGILLATGLHVHRNSAHSAGVGAIFD RXRB_MOUSE 380 106
DGILLATGLHVHRNSAHSAGVGAIFD Q8VCR0_MOUSE 270 106
DGILLATGLHVHRNSAHSAGVGAIFD Q6MGB3_RAT 311 106
DGILLATGLHVHRNSAHSAGVGAIFD A2AJP1_MOUSE 327 105
DGILLATGLHVHRNSAHSAGVGAIFD RXRA_RAT 327 105
DGILLATGLHVHRNSAHSAGVGAIFD RXRA_MOUSE 327 105
DGILLATGLHVHRNSAHSAGVGAIFD RXRA_HUMAN 322 105
DGILLATGLHVHRNSAHSAGVGAIFD Q6LC96_MOUSE 299 105
DGILLATGLHVHRNSAHSAGVGAIFD Q3UMU4_MOUSE 327 105
DGILLATGLHVHRNSAHSAGVGAIFD Q2PFT8_MACFA 322 105
DGILLATGLHVHRNSAHSAGVGAIFD Q2NL52_HUMAN 322 105
DGILLATGLHVHRNSAHSAGVGAIFD Q0VJ96_RAT 327 105
DGILLATGLHVHRNSAHSAGVGAIFD B3KY83_HUMAN 225 105
DGILLATGLHVHRNSAHSAGVGAIFD RXRAA_DANRE 290 105
DGILLATGLHVHRNSAHSAGVGAIFD A7KE06_SALSA 276 104
DGILLATGLHVHRNSAHSAGVGAIFE Q91613_XENLA 312 102
DGILLATGLHVHRNSAHSAGVGVIFD A7KIK4_SALSA 274 102
DGILLATGLHVHRNSAHSAGVGSIFD B5TEI1_9PERC 311 102
DGILLATGLHVHRSSAHSAGVGSIFD Q2PK05_PETMA 324 113
DGILLATGLHVHRSSAHSAGVGSIFD Q2PK07_PETMA 338 113
DGILLATGLHVHRNSAHSAGVGAIFD Q589R1_ORYLA 275 100
DGILLATGLHVHRNSAHSAGVGAIFD Q8UUM6_ORYLA 275 100
DGILLATGLHVHRNSAHSAGVGAIFD C9WBQ7_PAROL 277 102
DGILLATGLHVHRNSAHTAGVGAIFD RXRAB_DANRE 239 103
DGILLATGLHVHRSSAHSAGVGSIFD RXRGA_DANRE 301 102
DGILLATGLHVHRSSAHQAGVGTIFD A7LIS3_NUCLP 299 97
DGILLATGLHVHRSSAHQAGVGTIFD Q66TQ0_9CAEN 290 97
DGILLATGLHVHRSSAHSAGVGSIFD Q2PK06_PETMA 337 112
DGILLGTGLHVHRSSAHSAGVGSIFN RXRGB_DANRE 312 102
DGILLATGLHVHRSSAHSAGVGSIFD B2R7C0_HUMAN 323 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_PONAB 323 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_PIG 323 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_MOUSE 323 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_HUMAN 323 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_BOVIN 323 102
DGILLATGLHVHRSSAHSAGVGSIFD Q6LDB2_9MURI 200 102
DGILLATGLHVHRSSAHSAGVGSIFD D0G7E9_PIG 200 102
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_RAT 323 102
DGIVLATGLTVHRNSAHQAGVGAIFD Q4GZT9_BLAGE 296 119
DGIVLATGLTVHRNSAHQAGVGAIFD Q4GZU0_BLAGE 273 96
DGILLATGLHVHRNSAHSAGVGAIFD Q32S23_BOVIN 392 106
DGILLATGLHVHRNSAHSAGVGAIFD Q1LV96_DANRE 284 102
DGILLATGLHVHRNSAHSAGVGAIFD RXRBA_DANRE 317 102
DGILLATGLHVHRSSAHQAGVGTIFD Q8T5C6_BIOGL 296 97
DGILLATGLHVHRSSAHQAGVGTIFD Q5I7G2_LYMST 296 97
DGILLATGLHVHRSSAHSAGVGSIFD B6ZGT6_HUMAN 323 102
DGIVLATGLTVHRNSAHQAGVGTIFD Q6V7U7_LOCMI 272 102
DGIVLATGLTVHRNSAHQAGVGTIFD Q9U7D9_LOCMI 250 80
DGILLATGLHVHRSSAHNAGVGSIFD Q5HZR5_XENLA 330 102
DGILLATGLHVHRSSAHNAGVGSIFD RXRG_XENLA 330 102
DGILLATGLHVHRSSAHQAGVGTIFD A7LIS4_NUCLP 304 97
DGILLASGLHVHRSSAHQAGVGTIFD Q8MX78_BRAFL 351 97
DGILLATGLHVHRSSAHSAGVGSIFD RXRG_CHICK 327 102
DGILLATGLHVHRSSAHNAGVGSIFD Q4KLS2_XENLA 331 102
DGIVLATGLVVHRSSAHQAGVGTIFD C4N545_CRACN 256 97
DGIVLATGLVIHRNSAHQAGVGSIFD A1XQQ1_9CRUS 261 97
DGIVLATGLVIHRSSAHQAGVGAIFD O76241_UCAPU 319 131
DGIVLATGLVIHRSSAHQAGVGAIFD Q3I5Q1_GECLA 285 131
DGIVLATGLVVQRHSAHSAGVGAIFD A8R3X7_ORNMO 314 128
DGIVLATGLVVQRHSAHGAGVGDIFD O61449_9ACAR 275 111
DGIVLATGLVVHRSSAHQAGVGAIFD C3S7S0_CARMA 295 139
DEILLATGLHVPKESTHNLGVEAFFD B3DG77_DANRE 271 99
DEILLATGLHVPKESTHNLGVEAFFD RXRBB_DANRE 271 99
DGIVLASGLIVHRNSAHGAGVGTIFD A8J362_LIOAU 272 97
DGIVLATGITVHRNSAQQAGVGTIFD Q9NG48_APIME 288 96
DGIILASGLRVYRQSAHSAGVGAIFD Q4H2U9_CIOIN 345 94
DGIVLATGITVHRNSAQQAGVGTIFD Q07DL1_9HYME 288 96
DGIVLATGITVHRNSAQQAGVGTIFD Q5MBF7_9HYME 288 96
DGIVLASGTIVHRNSAHNAGVGTIFD D2WID2_9ARAC 267 90
SKDGVLLASELQRDSANSAGVGAIFD Q7SZG3_TAKRU 216 100
KDGIVLATGLVHRSSAHQAGVGTIFD C4N546_CRACN 255 96
DAIVLATGLTVNKTSAHAVGVGNIYD Q9NFY1_TENMO 269 100
DGIVLATGLVIHRSSAHQAGVGAIFD Q3I5Q2_GECLA 290 131
DGIVLATGLVVHRSSAHHAGVGDIFD A7BJ54_PENJP 298 96
DGIVLATGLVVHRSSAHQAGVGTIFD C4N544_CRACN 261 97
DAIVLATGLTVNKSTAHAVGVGNIYD A1JUG2_TRICA 268 100
DGIVLATGLVVHRSSAHQAGVGAIFD C3S7R9_CARMA 256 97
NGIQLASGVVVTRENAHTSGVGAIFD C3VMP3_CALFI 265 102
EGIILATGLTINKSTAQAVGVGNIYD Q4W6C8_LEPDE 245 95
DAIVLATGYAVNKNSAHQAGLEAIFD Q52ZP0_9NEOP 266 99
QLMCLMPGMTLHRNSALQAGVGQIFD Q8I1M8_9NEOP 264 122
QLICLMPGMTLHRNSALQAGVGQIFD USP_BOMMO 317 121
QLMCLMPGMTLHRNSALQAGVGQIFD Q6IVK1_PLOIN 269 126
QLMCLMPGMTLHRNSALQAGVGQIFD B9UCQ5_HELAM 269 126
QLMCLMPGMTLHRNSAQQAGVGAIFD USP_CHOFU 326 125
QQLFLNQSFSYHRNSAIKAGVHAIFD B4JM23_DROGR 382 183
QLMCLMPGMTLHRNSALQAGVGQIFD A9UEF7_SPOLT 322 126
QLMCLMPGMTLHRNSALQAGVGQIFD B2ZCQ5_SPOEX 267 124
QQLFLNQSFSYHRNSAIKAGVSTIFD B3MYQ7_DROAN 366 178
QQLFLNQSFSYHRNSAIKAGVSTIFD B4NBX1_DROWI 335 162
QLMCLMPGMTLHRNSALQAGVGQIFD USP_MANSE 316 121
QQLFLNQSFSYHRNSAIKAGVHAIFD B4M7S9_DROVI 353 173
QQLFLNQSFSYHRNSAIKAGVSAIFD B3P8U7_DROER 361 176
QQLFLNQSFSYHRNSAIKAGVSAIFD USP_DROME 362 176
QQLFLNQSFSYHRNSAIKAGVSAIFD B4Q1J3_DROYA 363 177
QQLFLNQSFSYHRNSAIKAGVSAIFD B4I9M8_DROSE 359 176
QQLFLSQSFSYHRNSAIKAGVQAIFD B4L2K6_DROMO 338 169
QQLFLNQSFSYHRNSAIKAGVSTIFD Q29J92_DROPS 341 166
DGLLLSTGHYIHRTSAHNAGIGAIFD B3RPF4_TRIAD 189 106
QQLFLNQNFSYHRNSAIKANVVSIFD Q962I5_LUCCU 329 157
QQMCLSRNYTLGRNMAVQAGVVQIFD O45117_CHITE 415 136
QLMCLGPNFTLHRNSAQQAGVDSLFD Q7PUT9_ANOGA 337 130
QLMCLGPNFTLHRNSAQQAGVDTLFD Q0IGE0_AEDAE 347 127
QLMCLGPNFTLHRNSAQQAGVDTLFD Q9GSG8_AEDAE 347 127
QLMCLGPNFTLHRNSAQQAGVDTLFD Q9GSG7_AEDAE 322 127
QLMCLGPNFTLHRNSAQQAGVDTLFD Q9U3Y3_AEDAL 348 127
QLMCLGPNFTLHRNSAQQAGVDTLFD B0X9K6_CULQU 324 127
DGLLLSIGRHLGREVAKSHGLGPLVD C4QN62_SCHMA 537 184
DGLLLSIGRHLGREVAKSHGLGPLVD O97120_SCHMA 537 184
RETINOIDXR3 Length of motif = 19 Motif number = 3
Retinoid X receptor motif III - 5
PCODE ST INT
RVLTELVSKMRDMRMDKTE B3DLT9_XENTR 298 0
RVLTELVSKMRDMRMDKTE Q91840_XENLA 298 0
RVLTELVSKMRDMRMDKTE Q28CI3_XENTR 335 0
RVLTELVSKMRDMQMDKTE RXRA_XENLA 374 0
RVLTELVSKMRDMRMDKTE Q6INZ0_XENLA 335 0
RVLTELVSKMRDMRMDKTE A5D9P3_PIG 418 0
RVLTELVSKMRDMRMDKTE RXRB_HUMAN 419 0
RVLTELVSKMRDMRMDKTE RXRB_CANFA 419 0
RVLTELVSKMRDMRMDKTE Q5STQ1_HUMAN 423 4
RVLTELVSKMRDMRMDKTE Q5STP9_HUMAN 419 0
RVLTELVSKMRDMRMDKTE Q0GFF5_PIG 418 0
RVLTELVSKMRDMRMDKTE B7Z7J5_HUMAN 233 4
RVLTELVSKMRDMRMDKTE A8MS99_HUMAN 323 0
RVLTELVSKMRDMRMDKTE A6H7I6_BOVIN 418 0
RVLTELVSKMRDMRMDKTE A5D9P5_PIG 300 4
RVLTELVSKMRDMRMDKTE Q3TWJ1_MOUSE 410 4
RVLTELVSKMRDMRMDKTE RXRB_MOUSE 406 0
RVLTELVSKMRDMRMDKTE Q8VCR0_MOUSE 300 4
RVLTELVSKMRDMRMDKTE Q6MGB3_RAT 337 0
RVLTELVSKMRDMQMDKTE A2AJP1_MOUSE 353 0
RVLTELVSKMRDMQMDKTE RXRA_RAT 353 0
RVLTELVSKMRDMQMDKTE RXRA_MOUSE 353 0
RVLTELVSKMRDMQMDKTE RXRA_HUMAN 348 0
RVLTELVSKMRDMQMDKTE Q6LC96_MOUSE 325 0
RVLTELVSKMRDMQMDKTE Q3UMU4_MOUSE 353 0
RVLTELVSKMRDMQMDKTE Q2PFT8_MACFA 348 0
RVLTELVSKMRDMQMDKTE Q2NL52_HUMAN 348 0
RVLTELVSKMRDMQMDKTE Q0VJ96_RAT 353 0
RVLTELVSKMRDMQMDKTE B3KY83_HUMAN 251 0
RVLTELVSKMRDMQMDKTE RXRAA_DANRE 316 0
RVLTELVSKMRDMQMDKTE A7KE06_SALSA 316 14
RVLTELVSKMRDMRMDKTE Q91613_XENLA 338 0
RVLTELVSKMRDMQMDKTE A7KIK4_SALSA 314 14
RVLTELVSKMKDMQMDKTE B5TEI1_9PERC 337 0
RVLTELVSKMRDMNMDKAE Q2PK05_PETMA 350 0
RVLTELVSKMRDMNMDKAE Q2PK07_PETMA 364 0
RVLTELVSKMRDMQMDKTE Q589R1_ORYLA 313 12
RVLTELVSKMRDMQMDKTE Q8UUM6_ORYLA 313 12
RVLTELVSKMRDMQMDKSE C9WBQ7_PAROL 303 0
RVLTELVSKMRDMQMDKTE RXRAB_DANRE 265 0
RVLTELVSKMRDMQMDKTE RXRGA_DANRE 327 0
RVLTELVAKMREMKMDKTE A7LIS3_NUCLP 325 0
RVLTELVAKMREMKMDKTE Q66TQ0_9CAEN 316 0
RVLTELVSKMRDMNMDKAE Q2PK06_PETMA 363 0
RVLTELVSKMKDMQMDKTE RXRGB_DANRE 338 0
RVLTELVSKMKDMQMDKSE B2R7C0_HUMAN 349 0
RVLTELVSKMKDMQMDKSE RXRG_PONAB 349 0
RVLTELVSKMKDMQMDKSE RXRG_PIG 349 0
RVLTELVSKMKDMQMDKSE RXRG_MOUSE 349 0
RVLTELVSKMKDMQMDKSE RXRG_HUMAN 349 0
RVLTELVSKMKDMQMDKSE RXRG_BOVIN 349 0
RVLTELVSKMKDMQMDKSE Q6LDB2_9MURI 226 0
RVLTELVSKMKDMQMDKSE D0G7E9_PIG 226 0
RVLTELVSKMKDMRMDKSE RXRG_RAT 349 0
RVLTELVAKMREMKMDKTE Q4GZT9_BLAGE 322 0
RVLTELVAKMREMKMDKTE Q4GZU0_BLAGE 299 0
RVLTELVSKMRDMRMDKTE Q32S23_BOVIN 418 0
RVLTELVSKMRDMQMDKTE Q1LV96_DANRE 324 14
RVLTELVSKMRDMQMDKTE RXRBA_DANRE 357 14
RVLTELVAKMRDMKMDKTE Q8T5C6_BIOGL 322 0
RVLTELVAKMREMKMDKTE Q5I7G2_LYMST 322 0
RVLTELVSKMKDMQMDKSE B6ZGT6_HUMAN 349 0
RVLTELVAKMREMKMDKTE Q6V7U7_LOCMI 298 0
RVLTELVAKMREMKMDKTE Q9U7D9_LOCMI 276 0
RVLTELVSKMKDMDMDKSE Q5HZR5_XENLA 356 0
RVLTELVSKMKDMDMDKSE RXRG_XENLA 356 0
RVLTELVAKMREMKMDKTE A7LIS4_NUCLP 330 0
RVLTELVAKMRDMKMDKTE Q8MX78_BRAFL 377 0
RVLTELVSKMKDMQMDKSE RXRG_CHICK 353 0
RVLTELVSKMKDMEMDKSE Q4KLS2_XENLA 357 0
RVLSELVAKMKEMKMDKTE C4N545_CRACN 282 0
RVLTELVSKMREMKLDLAE A1XQQ1_9CRUS 287 0
RVLSELVAKMKEMKIDKTE O76241_UCAPU 345 0
RVLSELVAKMKEMKIDKTE Q3I5Q1_GECLA 311 0
RVLTELVAKMRELRMDRTE A8R3X7_ORNMO 340 0
RVLAELVAKMRDMKMDKTE O61449_9ACAR 301 0
RVLSELVAKVKEMKMDKTE C3S7S0_CARMA 321 0
RVLTELVCKMRDMQMDKTE B3DG77_DANRE 311 14
RVLTELVCKMRDMQMDKTE RXRBB_DANRE 311 14
RVLTELVAKMREMNMDKTE A8J362_LIOAU 298 0
RVLSELVSKMREMKMDRTE Q9NG48_APIME 314 0
RVLTELIAKMRDMSMDRTE Q4H2U9_CIOIN 371 0
RVLSELVSKMREMKMDRTE Q07DL1_9HYME 314 0
RVLSELVSKMREMKMDRTE Q5MBF7_9HYME 314 0
RLLSELVNKMREMKMDKTE D2WID2_9ARAC 293 0
RVLTELVNKMRDMQMDKTE Q7SZG3_TAKRU 256 14
RVLSELVAKMKEMKMDKTE C4N546_CRACN 281 0
RVLSELVNKMKEMKMDKTE Q9NFY1_TENMO 295 0
RVLSELVAKMKEMKIDKTE Q3I5Q2_GECLA 316 0
RVLSELVAKMKEMKMDKTE A7BJ54_PENJP 324 0
RVLSELVAKMKEMKMDKTE C4N544_CRACN 287 0
RVLSELVNKMKEMKMDKTE A1JUG2_TRICA 294 0
RVLSELVAKVKEMKMDKTE C3S7R9_CARMA 282 0
RVLVELVSKMTEMCMDKTE C3VMP3_CALFI 291 0
RVLSELVNKMKEMRMDKTE Q4W6C8_LEPDE 271 0
RVLTEVVYKMREIRMDKTE Q52ZP0_9NEOP 292 0
RVLSELSLKMRHLRMDQAE Q8I1M8_9NEOP 290 0
RVLSELSLKMRSLRMDQAE USP_BOMMO 343 0
RVLSELALKMRSLPVDQAE Q6IVK1_PLOIN 295 0
RVLSELSLKMRSLRVDQAE B9UCQ5_HELAM 295 0
RVLSELSLKMRTLRMDQAE USP_CHOFU 352 0
RILSELSVKMKRLNLDRRE B4JM23_DROGR 408 0
RVLSELSLKMRALRFDQAE A9UEF7_SPOLT 348 0
RVLSELSLKMRALRVDQAE B2ZCQ5_SPOEX 293 0
RILSELSVKMKRLNLDRRE B3MYQ7_DROAN 392 0
RILSELSVKMKRLNLDRRE B4NBX1_DROWI 361 0
RVLSELSLKMRTLRMDQAE USP_MANSE 342 0
RILSELSVKMKRLNLDRRE B4M7S9_DROVI 379 0
RILSELSVKMKRLNLDRRE B3P8U7_DROER 387 0
RILSELSVKMKRLNLDRRE USP_DROME 388 0
RILSELSVKMKRLNLDRRE B4Q1J3_DROYA 389 0
RILSELSVKMKRLNLDRRE B4I9M8_DROSE 385 0
RILSELSVKMKRLNLDRRE B4L2K6_DROMO 364 0
RILSELSVKMKRLNLDRRE Q29J92_DROPS 367 0
RILTELVNQMRYLKMDKTE B3RPF4_TRIAD 215 0
RILSELSIKMKRLNIDRSE Q962I5_LUCCU 355 0
RILSELSVKMKRLDLDATE O45117_CHITE 441 0
RILCELAIKMKRLDVNRAE Q7PUT9_ANOGA 363 0
RILCELGIKMKRLDVTRAE Q0IGE0_AEDAE 373 0
RILCELGIKMKRLDVTRAE Q9GSG8_AEDAE 373 0
RILCELGIKMKRLDVTRAE Q9GSG7_AEDAE 348 0
RILCELGIKMKRLDVTRAE Q9U3Y3_AEDAL 374 0
RILCELGIKMKRLDVTRAE B0X9K6_CULQU 350 0
RILHELVARFRDLSLQRTE C4QN62_SCHMA 563 0
RILHELVARFRDLSLQRTE O97120_SCHMA 563 0
RETINOIDXR4 Length of motif = 20 Motif number = 4
Retinoid X receptor motif IV - 5
PCODE ST INT
VEVLREKVYASLESYCKQKY B3DLT9_XENTR 339 22
VEVLREKVYASLESYCKQKY Q91840_XENLA 339 22
VEVLREKVYASLESYCKQKY Q28CI3_XENTR 376 22
VEALREKVYASLEAYCKQKY RXRA_XENLA 415 22
VEVLREKVYASLESYCKQKY Q6INZ0_XENLA 376 22
VEVLREKVYASLETYCKQKY A5D9P3_PIG 459 22
VEVLREKVYASLETYCKQKY RXRB_HUMAN 460 22
VEVLREKVYASLETYCKQKY RXRB_CANFA 460 22
VEVLREKVYASLETYCKQKY Q5STQ1_HUMAN 464 22
VEVLREKVYASLETYCKQKY Q5STP9_HUMAN 460 22
VEVLREKVYASLETYCKQKY Q0GFF5_PIG 459 22
VEVLREKVYASLETYCKQKY B7Z7J5_HUMAN 274 22
VEVLREKVYASLETYCKQKY A8MS99_HUMAN 364 22
VEVLREKVYASLETYCKQKY A6H7I6_BOVIN 459 22
VEVLREKVYASLETYCKQKY A5D9P5_PIG 341 22
VEILREKVYASLETYCKQKY Q3TWJ1_MOUSE 451 22
VEILREKVYASLETYCKQKY RXRB_MOUSE 447 22
VEILREKVYASLETYCKQKY Q8VCR0_MOUSE 341 22
VEILREKVYASLETYCKQKY Q6MGB3_RAT 378 22
VEALREKVYASLEAYCKHKY A2AJP1_MOUSE 394 22
VEALREKVYASLEAYCKHKY RXRA_RAT 394 22
VEALREKVYASLEAYCKHKY RXRA_MOUSE 394 22
VEALREKVYASLEAYCKHKY RXRA_HUMAN 389 22
VEALREKVYASLEAYCKHKY Q6LC96_MOUSE 366 22
VEALREKVYASLEAYCKHKY Q3UMU4_MOUSE 394 22
VEALREKVYASLEAYCKHKY Q2PFT8_MACFA 389 22
VEALREKVYASLEAYCKHKY Q2NL52_HUMAN 389 22
VEALREKVYASLEAYCKHKY Q0VJ96_RAT 394 22
VEALREKVYASLEAYCKHKY B3KY83_HUMAN 292 22
VEALREKVYASLEAYCKHKY RXRAA_DANRE 357 22
VELLREKVYASLESYCKQRY A7KE06_SALSA 357 22
VEVLREKVYACLESYCKQKY Q91613_XENLA 379 22
VELLREKVYASLESYCKHRY A7KIK4_SALSA 355 22
VEGLREKVYASLESYTKQKY B5TEI1_9PERC 378 22
VEALREKVYASLESYCKQKY Q2PK05_PETMA 391 22
VEALREKVYASLESYCKQKY Q2PK07_PETMA 405 22
VELLRERVYASLETYCKHKY Q589R1_ORYLA 354 22
VELLRERVYASLETYCKHKY Q8UUM6_ORYLA 354 22
VELLRERVYASLESYCKQKY C9WBQ7_PAROL 344 22
VEALRERVYASLEAYCKHKY RXRAB_DANRE 306 22
VEALREKVYASLEGYTKHNY RXRGA_DANRE 368 22
VEQLREKVYASLEEYCKQRY A7LIS3_NUCLP 366 22
VEQLREKVYASLEEYCKQRY Q66TQ0_9CAEN 357 22
VEAFREKVYASLESYCKQKY Q2PK06_PETMA 404 22
VEALREKVYASLETYTKQKY RXRGB_DANRE 379 22
VETLREKVYATLEAYTKQKY B2R7C0_HUMAN 390 22
VETLREKVYATLEAYTKQKY RXRG_PONAB 390 22
VETLREKVYATLEAYTKQKY RXRG_PIG 390 22
VETLREKVYATLEAYTKQKY RXRG_MOUSE 390 22
VETLREKVYATLEAYTKQKY RXRG_HUMAN 390 22
VETLREKVYATLEAYTKQKY RXRG_BOVIN 390 22
VETLREKVYATLEAYTKQKY Q6LDB2_9MURI 267 22
VETLREKVYATLEAYTKQKY D0G7E9_PIG 267 22
VETLREKVYATLEAYTKQKY RXRG_RAT 390 22
VELLREKVYAALEEYTRTTY Q4GZT9_BLAGE 363 22
VELLREKVYAALEEYTRTTY Q4GZU0_BLAGE 340 22
VEVLREKVYASLETYCKQKY Q32S23_BOVIN 459 22
VELLREKVYASLEAYCKQRY Q1LV96_DANRE 365 22
VELLREKVYASLEAYCKQRY RXRBA_DANRE 398 22
VEQLREKVYASLEEYTKSRY Q8T5C6_BIOGL 363 22
VEQLREKVYASLEEYTKTRY Q5I7G2_LYMST 363 22
VETLREKVYATLGAYTKQKY B6ZGT6_HUMAN 390 22
VELLREKVYAALEEYTRTTH Q6V7U7_LOCMI 339 22
VELLREKVYAALEEYTRTTH Q9U7D9_LOCMI 317 22
VEALREKVYATLESYTKQKY Q5HZR5_XENLA 397 22
VEALREKVYATLESYTKQKY RXRG_XENLA 397 22
VEQLREKVYASLEEYCKQRY A7LIS4_NUCLP 371 22
VESLREKVYASLEEYCKQQY Q8MX78_BRAFL 418 22
VESLREKVYATLEAYTKQKY RXRG_CHICK 394 22
VEALREKVYATLESYTKQKY Q4KLS2_XENLA 398 22
VEILREKVYAALEEYTRTSY C4N545_CRACN 323 22
VEALREKVYATLEEYTRTNY A1XQQ1_9CRUS 328 22
VEILREKVYAALEEYTRTTY O76241_UCAPU 386 22
VEILREKVYAALEEYTRTTY Q3I5Q1_GECLA 352 22
VEALRERVYAALEDHCRQQY A8R3X7_ORNMO 381 22
VEALREKVYAALEEHCRRHH O61449_9ACAR 342 22
VEILREKVYAALEESTRTTY C3S7S0_CARMA 362 22
VELLREKVYASLESYCKQKY B3DG77_DANRE 352 22
VELLREKVYASLESYCKQKY RXRBB_DANRE 352 22
VENLRERVYSALEDYCRQNY A8J362_LIOAU 339 22
VTLLREKIYGALEGYCRVAW Q9NG48_APIME 355 22
IETLREKVYASLEVYCKSKY Q4H2U9_CIOIN 412 22
VTLLREKIYAALEGYCRVAW Q07DL1_9HYME 355 22
VTLLREKIYAALEGYCRVAW Q5MBF7_9HYME 355 22
VTNLRDKVYTALEEYCKQMY D2WID2_9ARAC 334 22
VELLREKVYASLEAYCKQRY Q7SZG3_TAKRU 297 22
VEILREKVYAALEEYTRTSY C4N546_CRACN 322 22
VEMLREKIYGVLEEYTRTTH Q9NFY1_TENMO 336 22
VEILREKVYAALEEYTRTTY Q3I5Q2_GECLA 357 22
IEVLREKVYATLEEYTRTSY A7BJ54_PENJP 365 22
VEILREKVYAALEEYTRTSY C4N544_CRACN 328 22
VEMLREKIYGVLEEYTRTTH A1JUG2_TRICA 335 22
VEILREKVYAALEESTRTTY C3S7R9_CARMA 323 22
VEQLRERVYASLEEYTRSTH C3VMP3_CALFI 332 22
VEILREKIYENLEEYTRTTH Q4W6C8_LEPDE 312 22
VESLREKVFCVPDEHTRINY Q52ZP0_9NEOP 333 22
VEVLREKMYSCLDEYCRRVR Q8I1M8_9NEOP 331 22
VDVLREKMFLCLDEYCRRSR USP_BOMMO 384 22
VEVLREKMYSCLDEYCRRSR Q6IVK1_PLOIN 336 22
VEVLREKMFLCLDEYCRRSR B9UCQ5_HELAM 336 22
VDVLREKMFSCLDDYCRRSR USP_CHOFU 393 22
VELCREKVYACLDEHCRLEH B4JM23_DROGR 449 22
VELLREKMFSCLDEYVRRSR A9UEF7_SPOLT 389 22
VEILREKMFSCLDEYVRRSR B2ZCQ5_SPOEX 334 22
IEMCREKVYACLDEHCRQEH B3MYQ7_DROAN 433 22
IEMCREKVYACLDEHCRQEH B4NBX1_DROWI 402 22
VVVLREKMFSCLDEYVRRSR USP_MANSE 383 22
IELCREKVYACLDEHCRLEH B4M7S9_DROVI 420 22
IEMCREKVYACLDEHCRLEH B3P8U7_DROER 428 22
IEMCREKVYACLDEHCRLEH USP_DROME 429 22
IEMCREKVYACLDEHCRLEH B4Q1J3_DROYA 430 22
IEMCREKVYACLDEHCRLEH B4I9M8_DROSE 426 22
IEHCREKVYACLDEHCRLEH B4L2K6_DROMO 405 22
IEICREKVYACLDEHCRVEH Q29J92_DROPS 408 22
VEKYRELVYGALEAYVKKRF B3RPF4_TRIAD 256 22
VEVCREKIYACLDEHCRTEH Q962I5_LUCCU 396 22
IDLLRSRIYASLDEYCRQKH O45117_CHITE 482 22
IDQMREKIYACLDEYCKTQH Q7PUT9_ANOGA 404 22
IDGMREKIYACLDEHCKQQH Q0IGE0_AEDAE 414 22
IDGMREKIYACLDEHCKQQH Q9GSG8_AEDAE 414 22
IDGMREKIYACLDEHCKQQH Q9GSG7_AEDAE 389 22
DDGMREKIYACLDEHCKQQH Q9U3Y3_AEDAL 415 22
IDHMREKIYGCLDEYCKQQH B0X9K6_CULQU 391 22
VEAVREQLYSALHSYCTTNQ C4QN62_SCHMA 604 22
VEAVREQLYSALHSYCTTNQ O97120_SCHMA 604 22
User query: Display/Full Code "RETINOIDXR"