WORKLIST ENTRIES (1):
OPSIN View alignment View Structure Opsin signature
Type of fingerprint: COMPOUND with 3 elements
Links:
PRINTS; PR00237 GPCRRHODOPSN; PR00247 GPCRCAMP; PR00248 GPCRMGR
PRINTS; PR00249 GPCRSECRETIN; PR00250 GPCRSTE2; PR00899 GPCRSTE3
PRINTS; PR00251 BACTRLOPSIN
PRINTS; PR00574 OPSINBLUE; PR00575 OPSINREDGRN; PR00576 OPSINRH1RH2
PRINTS; PR00577 OPSINRH3RH4; PR00578 OPSINLTRLEYE; PR01244 PEROPSIN
PRINTS; PR00666 PINOPSIN; PR00579 RHODOPSIN; PR00239 RHODOPSNTAIL
PRINTS; PR00667 RPERETINALR
INTERPRO; IPR001760
PROSITE; PS00238 OPSIN
Creation date 20-DEC-1993; UPDATE 22-JUN-1999
1. APPLEBURY, M.L. AND HARGRAVE, P.A.
Molecular biology of the visual pigments.
VISION RES. 26(12) 1881-1895 (1986).
2. FRYXELL, K.J. AND MEYEROWITZ, E.M.
The evolution of rhodopsins and neurotransmitter receptors.
J.MOL.EVOL. 33(4) 367-378 (1991).
3. ATTWOOD, T.K. AND FINDLAY, J.B.C.
Design of a discriminating fingerprint for G protein-coupled receptors.
PROTEIN ENG. 6(2) 167-176 (1993).
4. ATTWOOD, T.K. AND FINDLAY, J.B.C.
Fingerprinting G protein-coupled receptors.
PROTEIN ENG. 7(2) 195-203 (1994).
Visual pigments are the light-absorbing molecules that mediate vision [1,2].
They comprise an apoprotein (opsin), covalently linked to the chromophore
cis-retinal. Vision is effected through the absorption of a photon by the
chromophore, which is isomerised to the all-trans form, promoting a
conformational change in the protein.
Opsins are integral membrane proteins that belong to a superfamily of G-
protein-coupled receptors (GPCRs). The activating ligands of the different
superfamily members vary widely in structure and character, yet the proteins
appear faithfully to have conserved a basic structural framework, believed
to consist of 7 transmembrane (TM) helices. Although the sequences of these
proteins are very diverse, reflecting to some extent this broad range of
activating ligands, nevertheless, motifs have been identified in the TM
regions that are characteristic of virtually the entire superfamily [3,4].
Amongst the exceptions are the olfactory receptors, which cluster together
in a subfamily, which lacks significant matches with domains 2, 4 and 6.
Interestingly, the opsins also seem to be emerging as increasingly atypical
of the superfamily, clustering most strongly, in phylogenetic analyses, with
the olfactory receptors [4].
OPSIN is a 3-element fingerprint that provides a signature for the opsin
family of GPCRs. The fingerprint was derived from an initial alignment of
13 sequences: the motifs encode regions generally well-conserved within the
opsins but less well-conserved in the superfamily - motif 1 spans the
first cytoplasmic loop; motif 2 lies in the second external loop; and
motif 3 spans part of the third external loop leading into TM domain 7.
Two iterations on OWL22.0 were required to reach convergence, at which
point a true set comprising 52 sequences was identified.
An update on SPTR37_9f identified a true set of 123 sequences, and 7
partial matches.
SUMMARY INFORMATION
123 codes involving 3 elements
7 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
3| 123 123 123
2| 5 3 6
--+----------------
| 1 2 3
True positives..
OPSD_CHICK OPSD_CANFA OPSD_TRIMA OPSD_RABIT
OPSD_MOUSE OPSD_CRIGR OPSD_PIG OPSD_MACFA
OPSD_HUMAN OPSD_BUFMA OPSD_GAMAF OPSD_AMBTI
OPSD_BUFBU OPSD_RANCA OPSD_RANPI OPSD_RANTE
OPSF_ANGAN OPSD_NEOSA OPSD_ORYLA OPSD_SARDI
OPSD_POERE OPSD_ANOCA OPSD_ZEUFA OPSD_ASTFA
OPSD_PHOVI OPSD_PHOGR OPSD_CYPCA OPSD_BOVIN
OPSD_RAT OPSD_ALLMI OPSD_XENLA OPSD_SHEEP
OPSD_DELDE OPSD_GLOME OPSD_MESBI OPSD_TURTR
OPSU_BRARE OPSD_CARAU O93459 OPSB_CONCO
OPSD_POMMI OPSD_ANGAN OPSD_LAMJA OPSD_RAJER
OPSG_CARAU O93441 OPSD_PETMA OPSB_GECGE
O57605 OPSB_ANOCA OPSG_ASTFA OPSR_ANOCA
OPSG_GECGE OPSG_HUMAN OPSR_CHICK OPSG_CHICK
OPSI_ASTFA OPSV_XENLA OPSR_ORYLA OPSH_ASTFA
OPSH_CARAU OPSR_HUMAN OPSR_XENLA O62860
OPSR_CAPHI OPSR_CARAU OPSB_MOUSE OPSB_RAT
OPSR_ASTFA OPSV_CHICK Q90226 OPSB_HUMAN
OPS1_DROME OPS1_DROPS OPSG_RABIT OPS1_CALVI
OPSB_SAIBB OPSB_BOVIN OPSG_MOUSE O35476
OPSV_ORYLA OPSB_ASTFA O46554 O70363
OPSP_CHICK OPSG_ORYLA OPS1_LIMPO OPS2_LIMPO
OPSB_CARAU OPSP_COLLI OPSB_CHICK OPSU_CARAU
OPSB_ORYLA OPS2_DROME OPS2_DROPS OPSD_CATBO
OPSD_CAMAB OPSD_APIME OPS1_SCHGR OPSD_SPHSP
OPSD_PROCL OPSP_ICTPU OPSD_OCTDO OPS2_HEMSA
OPS3_DROPS OPS3_DROME OPS1_PATYE OPS4_DROPS
OPSD_SEPOF OPS4_DROVI O76124 OPSD_TODPA
OPSD_LOLFO OPS6_DROME OPS4_DROME O76123
O61473 OPSB_APIME OPSV_APIME O57422
O76125 O61474 OPS2_SCHGR
Subfamily: Codes involving 2 elements
Subfamily True positives..
OPSP_PETMA OPS1_HEMSA OPSO_SALSA OPS5_DROME
OPSX_HUMAN OPSX_MOUSE OPS2_PATYE
PROTEIN TITLES
OPSD_CHICK RHODOPSIN - GALLUS GALLUS (CHICKEN).
OPSD_CANFA RHODOPSIN - CANIS FAMILIARIS (DOG).
OPSD_TRIMA RHODOPSIN - TRICHECHUS MANATUS (CARIBBEAN MANATEE) (WEST IND
OPSD_RABIT RHODOPSIN - ORYCTOLAGUS CUNICULUS (RABBIT).
OPSD_MOUSE RHODOPSIN - MUS MUSCULUS (MOUSE).
OPSD_CRIGR RHODOPSIN - CRICETULUS GRISEUS (CHINESE HAMSTER).
OPSD_PIG RHODOPSIN - SUS SCROFA (PIG).
OPSD_MACFA RHODOPSIN - MACACA FASCICULARIS (CRAB EATING MACAQUE) (CYNOM
OPSD_HUMAN RHODOPSIN - HOMO SAPIENS (HUMAN).
OPSD_BUFMA RHODOPSIN - BUFO MARINUS (GIANT TOAD) (CANE TOAD).
OPSD_GAMAF RHODOPSIN - GAMBUSIA AFFINIS (WESTERN MOSQUITOFISH).
OPSD_AMBTI RHODOPSIN - AMBYSTOMA TIGRINUM (TIGER SALAMANDER).
OPSD_BUFBU RHODOPSIN - BUFO BUFO (EUROPEAN TOAD).
OPSD_RANCA RHODOPSIN - RANA CATESBEIANA (BULL FROG).
OPSD_RANPI RHODOPSIN - RANA PIPIENS (NORTHERN LEOPARD FROG).
OPSD_RANTE RHODOPSIN - RANA TEMPORARIA (EUROPEAN COMMON FROG).
OPSF_ANGAN RHODOPSIN, FRESHWATER FORM - ANGUILLA ANGUILLA (EUROPEAN FRE
OPSD_NEOSA RHODOPSIN - NEONIPHON SAMMARA.
OPSD_ORYLA RHODOPSIN (KFH-RH) - ORYZIAS LATIPES (MEDAKA FISH).
OPSD_SARDI RHODOPSIN - SARGOCENTRON DIADEMA.
OPSD_POERE RHODOPSIN - POECILIA RETICULATA (GUPPY).
OPSD_ANOCA RHODOPSIN - ANOLIS CAROLINENSIS (GREEN ANOLE) (AMERICAN CHAM
OPSD_ZEUFA RHODOPSIN - ZEUS FABER (JOHN DORY).
OPSD_ASTFA RHODOPSIN - ASTYANAX FASCIATUS (BLIND CAVE FISH) (ASTYANAX M
OPSD_PHOVI RHODOPSIN - PHOCA VITULINA (HARBOR SEAL).
OPSD_PHOGR RHODOPSIN - PHOCA GROENLANDICA (HARP SEAL) (PAGOPHILUS GROEN
OPSD_CYPCA RHODOPSIN - CYPRINUS CARPIO (COMMON CARP).
OPSD_BOVIN RHODOPSIN - BOS TAURUS (BOVINE).
OPSD_RAT RHODOPSIN - RATTUS NORVEGICUS (RAT).
OPSD_ALLMI RHODOPSIN - ALLIGATOR MISSISSIPPIENSIS (AMERICAN ALLIGATOR).
OPSD_XENLA RHODOPSIN - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
OPSD_SHEEP RHODOPSIN - OVIS ARIES (SHEEP).
OPSD_DELDE RHODOPSIN - DELPHINUS DELPHIS (SADDLEBACK DOLPHIN) (BLACK SE
OPSD_GLOME RHODOPSIN - GLOBICEPHALA MELAENA (LONG-FINNED PILOT WHALE) (
OPSD_MESBI RHODOPSIN - MESOPLODON BIDENS.
OPSD_TURTR RHODOPSIN - TURSIOPS TRUNCATUS (ATLANTIC BOTTLE-NOSED DOLPHI
OPSU_BRARE ULTRAVIOLET-SENSITIVE OPSIN (ULTRAVIOLET CONE PHOTORECEPTOR
OPSD_CARAU RHODOPSIN - CARASSIUS AURATUS (GOLDFISH).
O93459 OPSIN - SCYLIORHINUS CANICULA (SPOTTED DOGFISH) (SPOTTED CAT
OPSB_CONCO BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT) - CON
OPSD_POMMI RHODOPSIN - POMATOSCHISTUS MINUTUS (SAND GOBY).
OPSD_ANGAN RHODOPSIN, DEEP-SEA FORM - ANGUILLA ANGUILLA (EUROPEAN FRESH
OPSD_LAMJA RHODOPSIN - LAMPETRA JAPONICA (JAPANESE LAMPREY).
OPSD_RAJER RHODOPSIN - RAJA ERINACEA (LITTLE SKATE).
OPSG_CARAU GREEN-SENSITIVE OPSIN 1 (GREEN CONE PHOTORECEPTOR PIGMENT) -
O93441 OPSIN - GALEUS MELASTOMUS.
OPSD_PETMA RHODOPSIN - PETROMYZON MARINUS (SEA LAMPREY).
OPSB_GECGE BLUE-SENSITIVE OPSIN P467 (BLUE PHOTORECEPTOR PIGMENT) - GEC
O57605 UV-SENSITIVE CONE OPSIN - MELOPSITTACUS UNDULATUS (BUDGERIGA
OPSB_ANOCA BLUE-SENSITIVE OPSIN (BLUE PHOTORECEPTOR PIGMENT) (RH2 OPSIN
OPSG_ASTFA GREEN-SENSITIVE OPSIN 1 (GREEN CONE PHOTORECEPTOR PIGMENT) -
OPSR_ANOCA RED-SENSITIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT) - ANOLI
OPSG_GECGE GREEN-SENSITIVE OPSIN P521 (GREEN PHOTORECEPTOR PIGMENT) - G
OPSG_HUMAN GREEN-SENSITIVE OPSIN (GREEN CONE PHOTORECEPTOR PIGMENT) - H
OPSR_CHICK RED-SENSITIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT) (IODOPS
OPSG_CHICK GREEN-SENSITIVE OPSIN (GREEN CONE PHOTORECEPTOR PIGMENT) - G
OPSI_ASTFA GREEN-SENSITIVE OPSIN 3 (GREEN CONE PHOTORECEPTOR PIGMENT) -
OPSV_XENLA VIOLET-SENSITIVE OPSIN (VIOLET CONE PHOTORECEPTOR PIGMENT) (
OPSR_ORYLA RED-SENSITIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT) (KFH-R)
OPSH_ASTFA GREEN-SENSITIVE OPSIN 2 (GREEN CONE PHOTORECEPTOR PIGMENT) -
OPSH_CARAU GREEN-SENSITIVE OPSIN 2 (GREEN CONE PHOTORECEPTOR PIGMENT) -
OPSR_HUMAN RED-SENSITIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT) - HOMO
OPSR_XENLA RED-SENSITIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT) - XENOP
O62860 COLOR VISION OPSIN - OTOLEMUR GARNETTI, AND GALAGO SENEGALEN
OPSR_CAPHI RED-SENSITIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT) - CAPRA
OPSR_CARAU RED-SENSITIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT) - CARAS
OPSB_MOUSE BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT) - MUS
OPSB_RAT BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT) - RAT
OPSR_ASTFA RED-SENSITIVE OPSIN (RED CONE PHOTORECEPTOR PIGMENT) - ASTYA
OPSV_CHICK VIOLET-SENSITIVE OPSIN (VIOLET CONE PHOTORECEPTOR PIGMENT) (
Q90226 GREEN OPSIN - ASTYANAX FASCIATUS (BLIND CAVE FISH) (ASTYANAX
OPSB_HUMAN BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT) - HOM
OPS1_DROME OPSIN RH1 (OUTER R1-R6 PHOTORECEPTOR CELLS OPSIN) - DROSOPHI
OPS1_DROPS OPSIN RH1 (OUTER R1-R6 PHOTORECEPTOR CELLS OPSIN) - DROSOPHI
OPSG_RABIT GREEN-SENSITIVE OPSIN (GREEN CONE PHOTORECEPTOR PIGMENT) - O
OPS1_CALVI OPSIN RH1 (OUTER R1-R6 PHOTORECEPTOR CELLS OPSIN) - CALLIPHO
OPSB_SAIBB BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT) - SAI
OPSB_BOVIN BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT) - BOS
OPSG_MOUSE GREEN-SENSITIVE OPSIN (GREEN CONE PHOTORECEPTOR PIGMENT) - M
O35476 GREEN OPSIN (GREEN-SENSITIVE OPSIN) - RATTUS NORVEGICUS (RAT
OPSV_ORYLA PUTATIVE VIOLET-SENSITIVE OPSIN (VIOLET CONE PHOTORECEPTOR P
OPSB_ASTFA BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT) - AST
O46554 BLUE OPSIN - CEBUS OLIVACEUS (WEEPER CAPUCHIN MONKEY).
O70363 BLUE CONE OPSIN PIGMENT - RATTUS NORVEGICUS (RAT).
OPSP_CHICK PINOPSIN (PINEAL OPSIN) (P-OPSIN) (PINEAL GLAND-SPECIFIC OPS
OPSG_ORYLA GREEN-SENSITIVE OPSIN (GREEN CONE PHOTORECEPTOR PIGMENT) (KF
OPS1_LIMPO LATERAL EYE OPSIN - LIMULUS POLYPHEMUS (ATLANTIC HORSESHOE C
OPS2_LIMPO OCELLAR OPSIN - LIMULUS POLYPHEMUS (ATLANTIC HORSESHOE CRAB)
OPSB_CARAU BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT) - CAR
OPSP_COLLI PINEAL OPSIN (P-OPSIN) (PINEAL GLAND-SPECIFIC OPSIN) - COLUM
OPSB_CHICK BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT) - GAL
OPSU_CARAU ULTRAVIOLET-SENSITIVE OPSIN (ULTRAVIOLET CONE PHOTORECEPTOR
OPSB_ORYLA BLUE-SENSITIVE OPSIN (BLUE CONE PHOTORECEPTOR PIGMENT) (KFH-
OPS2_DROME OPSIN RH2 (OCELLAR OPSIN) - DROSOPHILA MELANOGASTER (FRUIT F
OPS2_DROPS OPSIN RH2 (OCELLAR OPSIN) - DROSOPHILA PSEUDOOBSCURA (FRUIT
OPSD_CATBO RHODOPSIN - CATAGLYPHIS BOMBYCINA (SAHARAN SILVER ANT).
OPSD_CAMAB RHODOPSIN - CAMPONOTUS ABDOMINALIS (CARPENTER ANT).
OPSD_APIME RHODOPSIN, LONG-WAVELENGTH (OPSIN, GREEN-SENSITIVE) - APIS M
OPS1_SCHGR OPSIN 1 - SCHISTOCERCA GREGARIA (DESERT LOCUST).
OPSD_SPHSP RHODOPSIN (OPSIN) - SPHODROMANTIS SP. (MANTIS).
OPSD_PROCL RHODOPSIN - PROCAMBARUS CLARKII (RED SWAMP CRAYFISH).
OPSP_ICTPU PARAPINOPSIN - ICTALURUS PUNCTATUS (CHANNEL CATFISH).
OPSD_OCTDO RHODOPSIN - OCTOPUS DOFLEINI (GIANT OCTOPUS).
OPS2_HEMSA COMPOUND EYE OPSIN BCRH2 - HEMIGRAPSUS SANGUINEUS (CRAB).
OPS3_DROPS OPSIN RH3 (INNER R7 PHOTORECEPTOR CELLS OPSIN) - DROSOPHILA
OPS3_DROME OPSIN RH3 (INNER R7 PHOTORECEPTOR CELLS OPSIN) - DROSOPHILA
OPS1_PATYE RHODOPSIN, GQ-COUPLED - PATINOPECTEN YESSOENSIS (EZO GIANT S
OPS4_DROPS OPSIN RH4 (INNER R7 PHOTORECEPTOR CELLS OPSIN) - DROSOPHILA
OPSD_SEPOF RHODOPSIN - SEPIA OFFICINALIS (COMMON CUTTLEFISH).
OPS4_DROVI OPSIN RH4 (INNER R7 PHOTORECEPTOR CELLS OPSIN) - DROSOPHILA
O76124 OPSIN - PAPILIO XUTHUS.
OPSD_TODPA RHODOPSIN - TODARODES PACIFICUS (JAPANESE FLYING SQUID).
OPSD_LOLFO RHODOPSIN - LOLIGO FORBESI (NORTHERN EUROPEAN SQUID).
OPS6_DROME OPSIN RH6 - DROSOPHILA MELANOGASTER (FRUIT FLY).
OPS4_DROME OPSIN RH4 (INNER R7 PHOTORECEPTOR CELLS OPSIN) - DROSOPHILA
O76123 OPSIN - PAPILIO XUTHUS.
O61473 SHORT WAVELENGTH-SENSITIVE OPSIN - CATAGLYPHIS BOMBYCINA (SA
OPSB_APIME OPSIN, BLUE-SENSITIVE (AMBLOP) - APIS MELLIFERA (HONEYBEE).
OPSV_APIME OPSIN, ULTRAVIOLET-SENSITIVE (AMUVOP) (BUVOPS) - APIS MELLIF
O57422 MELANOPSIN - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
O76125 OPSIN - PAPILIO XUTHUS.
O61474 SHORT WAVELENGTH-SENSITIVE OPSIN - CAMPONOTUS ABDOMINALIS (C
OPS2_SCHGR OPSIN 2 - SCHISTOCERCA GREGARIA (DESERT LOCUST).
OPSP_PETMA PINEAL OPSIN (P-OPSIN) (PINEAL GLAND-SPECIFIC OPSIN) - PETRO
OPS1_HEMSA COMPOUND EYE OPSIN BCRH1 - HEMIGRAPSUS SANGUINEUS (CRAB).
OPSO_SALSA VERTEBRATE ANCIENT OPSIN - SALMO SALAR (ATLANTIC SALMON).
OPS5_DROME OPSIN RH5 - DROSOPHILA MELANOGASTER (FRUIT FLY).
OPSX_HUMAN VISUAL PIGMENT-LIKE RECEPTOR PEROPSIN - HOMO SAPIENS (HUMAN)
OPSX_MOUSE VISUAL PIGMENT-LIKE RECEPTOR PEROPSIN - MUS MUSCULUS (MOUSE)
OPS2_PATYE RHODOPSIN, G0-COUPLED - PATINOPECTEN YESSOENSIS (EZO GIANT S
SCAN HISTORY
OWL22_0 2 100 NSINGLE
OWL23_2 1 100 NSINGLE
OWL28_0 1 100 NSINGLE
SPTR37_9f 1 300 NSINGLE
INITIAL MOTIF SETS
OPSIN1 Length of motif = 13 Motif number = 1
Opsin motif I - 1
PCODE ST INT
YVTVQHKKLRTPL OPSD_BOVIN 60 60
YVTVQHKKLRTPL OPSD_HUMAN 60 60
YVTVQHKKLRTPL OPSD_SHEEP 60 60
AATMKFKKLRHPL OPSG_HUMAN 76 76
AATMKFKKLRHPL OPSR_HUMAN 76 76
YIFATTKSLRTPA OPS1_DROME 73 73
VATLRYKKLRQPL OPSB_HUMAN 57 57
YIFGGTKSLRTPA OPS2_DROME 80 80
WVFSAAKSLRTPS OPS3_DROME 81 81
WIFSTSKSLRTPS OPS4_DROME 77 77
YLFSKTKSLQTPA OPSD_OCTDO 58 58
YLFTKTKSLQTPA OPSD_LOLFO 57 57
OPSIN2 Length of motif = 13 Motif number = 2
Opsin motif II - 1
PCODE ST INT
GWSRYIPEGMQCS OPSD_BOVIN 174 101
GWSRYIPEGLQCS OPSD_HUMAN 174 101
GWSRYIPQGMQCS OPSD_SHEEP 174 101
GWSRYWPHGLKTS OPSG_HUMAN 190 101
GWSRYWPHGLKTS OPSR_HUMAN 190 101
GWSRYVPEGNLTS OPS1_DROME 187 101
GWSRFIPEGLQCS OPSB_HUMAN 171 101
GWSAYVPEGNLTA OPS2_DROME 194 101
TWGRFVPEGYLTS OPS3_DROME 194 100
FWDRFVPEGYLTS OPS4_DROME 190 100
NWGAYVPEGILTS OPSD_OCTDO 174 103
GWGAYTLEGVLCN OPSD_LOLFO 173 103
OPSIN3 Length of motif = 13 Motif number = 3
Opsin motif III - 1
PCODE ST INT
PIFMTIPAFFAKT OPSD_BOVIN 285 98
PIFMTIPAFFAKS OPSD_HUMAN 285 98
PIFMTIPAFFAKS OPSD_SHEEP 285 98
PLMAALPAFFAKS OPSG_HUMAN 301 98
PLMAALPAYFAKS OPSR_HUMAN 301 98
PLNTIWGACFAKS OPS1_DROME 308 108
LRLVTIPSFFSKS OPSB_HUMAN 282 98
PLTTIWGATFAKT OPS2_DROME 315 108
PGATMIPACACKM OPS3_DROME 317 110
QGATMIPACTCKL OPS4_DROME 313 110
PYAAELPVLFAKA OPSD_OCTDO 295 108
PYAAQLPVMFAKA OPSD_LOLFO 294 108
FINAL MOTIF SETS
OPSIN1 Length of motif = 13 Motif number = 1
Opsin motif I - 1
PCODE ST INT
YVTIQHKKLRTPL OPSD_CHICK 60 60
YVTVQHKKLRTPL OPSD_CANFA 60 60
YVTVQHKKLRTPL OPSD_TRIMA 60 60
YVTVQHKKLRTPL OPSD_RABIT 60 60
YVTVQHKKLRTPL OPSD_MOUSE 60 60
YVTVQHKKLRTPL OPSD_CRIGR 60 60
YVTVQHKKLRTPL OPSD_PIG 60 60
YVTVQHKKLRTPL OPSD_MACFA 60 60
YVTVQHKKLRTPL OPSD_HUMAN 60 60
YVTIQHKKLRTPL OPSD_BUFMA 60 60
YVTIEHKKLRTPL OPSD_GAMAF 60 60
YVTIQHKKLRTPL OPSD_AMBTI 60 60
YVTIQHKKLRTPL OPSD_BUFBU 60 60
YVTIQHKKLRTPL OPSD_RANCA 60 60
YVTIQHKKLRTPL OPSD_RANPI 60 60
YVTIQHKKLRTPL OPSD_RANTE 60 60
YVTIEHKKLRTPL OPSF_ANGAN 60 60
YVTLEHKKLRTPL OPSD_NEOSA 60 60
YVTLEHKKLRTPL OPSD_ORYLA 60 60
YVTLEHKKLRTPL OPSD_SARDI 60 60
YVTIEHKKLRTPL OPSD_POERE 60 60
FVTIQHKKLRTPL OPSD_ANOCA 60 60
YVTMEHKKLRTPL OPSD_ZEUFA 60 60
YVTIEHKKLRTPL OPSD_ASTFA 60 60
YVTVQHKKLRTPL OPSD_PHOVI 60 60
YVTVQHKKLRTPL OPSD_PHOGR 60 60
YVTIEHKKLRTPL OPSD_CYPCA 60 60
YVTVQHKKLRTPL OPSD_BOVIN 60 60
YVTVQHKKLRTPL OPSD_RAT 60 60
YVTVQHKKLRSPL OPSD_ALLMI 60 60
FVTIQHKKLRTPL OPSD_XENLA 60 60
YVTVQHKKLRTPL OPSD_SHEEP 60 60
YVTVQHKKLRTPL OPSD_DELDE 60 60
YVTVQHKKLRTPL OPSD_GLOME 60 60
YVTVQHKKLRTPL OPSD_MESBI 60 60
YVTVQHKKLRTPL OPSD_TURTR 60 60
YVTIEHKKLRTPL OPSU_BRARE 60 60
YVTIEHKKLRTPL OPSD_CARAU 60 60
YVTIQHKKLRQPL O93459 60 60
YVTIEHKKLRTPL OPSB_CONCO 60 60
YVTLEHKKLRTAL OPSD_POMMI 60 60
YVTIEHKKLRTPL OPSD_ANGAN 60 60
FVTVQHKKLRTPL OPSD_LAMJA 60 60
FVTIQHKKLRQPL OPSD_RAJER 60 60
VVTAQHKKLRQPL OPSG_CARAU 60 60
FVTIQNKKLRQPL O93441 60 60
FVTVQHKKLRTPL OPSD_PETMA 60 60
FVTFQHKKLRQPL OPSB_GECGE 60 60
VVTIKYKKLRQPL O57605 55 55
LVTFKHKKLRQPL OPSB_ANOCA 60 60
VATAKFKKLRHPL OPSG_ASTFA 73 73
VATAKFKKLRHPL OPSR_ANOCA 79 79
VATAKFKKLRHPL OPSG_GECGE 75 75
AATMKFKKLRHPL OPSG_HUMAN 76 76
VATWKFKKLRHPL OPSR_CHICK 73 73
LVTFKHKKLRQPL OPSG_CHICK 60 60
FVTAQHKKLQQPL OPSI_ASTFA 63 63
LVTIKYKKLRQPL OPSV_XENLA 55 55
VATAKFKKLRHPL OPSR_ORYLA 73 73
VATAKFKKLRHPL OPSH_ASTFA 71 71
ICTAQHKKLRQPL OPSH_CARAU 60 60
AATMKFKKLRHPL OPSR_HUMAN 76 76
VATLKFKKLRHPL OPSR_XENLA 75 75
AATMRFKKLRHPL O62860 76 76
AATMRFKKLRHPL OPSR_CAPHI 76 76
VATAKFKKLRHPL OPSR_CARAU 73 73
VATLHYKKLRQPL OPSB_MOUSE 55 55
VATLHYKKLRQPL OPSB_RAT 55 55
VASAKFKKLRHPL OPSR_ASTFA 73 73
WVTVRYKRLRQPL OPSV_CHICK 55 55
VATAKFKKLQHPL Q90226 71 71
VATLRYKKLRQPL OPSB_HUMAN 57 57
YIFATTKSLRTPA OPS1_DROME 73 73
YIFATTKSLRTPA OPS1_DROPS 73 73
VATMRFKKLRHPL OPSG_RABIT 76 76
YIFSTTKSLRTPA OPS1_CALVI 71 71
VATVRYKKLRHPL OPSB_SAIBB 58 58
VATLRYRKLRQPL OPSB_BOVIN 58 58
AATMRFKKLRHPL OPSG_MOUSE 71 71
AATMRFKKLRHPL O35476 71 71
LATAKYKKLRVPL OPSV_ORYLA 53 53
VCTVQYKKLRSHL OPSB_ASTFA 65 65
VATVRYKKLRHPL O46554 58 58
VATLHYKKLRQPL O70363 55 55
VVSICYKKLRSPL OPSP_CHICK 54 54
VVTAQNKKLRQPL OPSG_ORYLA 61 61
YLMMTTKSLRTPT OPS1_LIMPO 70 70
YLMMTTKSLRTPT OPS2_LIMPO 70 70
LCTIQFKKLRSHL OPSB_CARAU 64 64
VVSIRYKKLRSPL OPSP_COLLI 56 56
FCTARFRKLRSHL OPSB_CHICK 67 67
FVTMKYKKLRQPL OPSU_CARAU 53 53
ACTLQYKKLRSHL OPSB_ORYLA 66 66
YIFGGTKSLRTPA OPS2_DROME 80 80
YIFGGTKSLRTPA OPS2_DROPS 80 80
YIFTTTKSLRTPS OPSD_CATBO 77 77
YIFTTTKSLRTPS OPSD_CAMAB 77 77
YIFLSTKSLRTPS OPSD_APIME 75 75
YIFSTTKSLRTPS OPS1_SCHGR 77 77
YIFSTTKGLRTPS OPSD_SPHSP 75 75
WVFMNTKSLRTPA OPSD_PROCL 76 76
IVTVRYKQLRQPL OPSP_ICTPU 53 53
YLFSKTKSLQTPA OPSD_OCTDO 58 58
YLFNKSAALRTPA OPS2_HEMSA 77 77
WVFSAAKSLRTPS OPS3_DROPS 80 80
WVFSAAKSLRTPS OPS3_DROME 81 81
YIFSNTKSLRSPS OPS1_PATYE 74 74
WIFSTSKSLRTPS OPS4_DROPS 78 78
YLFTKTKSLQTPA OPSD_SEPOF 57 57
WIFSTSKALRTPS OPS4_DROVI 81 81
YIFTSTKSLKTPS O76124 79 79
YLFTKTKSLQTPA OPSD_TODPA 56 56
YLFTKTKSLQTPA OPSD_LOLFO 57 57
YIFTSSKGLRTPS OPS6_DROME 70 70
WIFSTSKSLRTPS OPS4_DROME 77 77
YIFTTTKTLKTPS O76123 79 79
WIFISAKSLRTPS O61473 72 72
WIFSTSKSLRTPS OPSB_APIME 80 80
WIFCAAKSLRTPS OPSV_APIME 71 71
YAFYRNKKLRTAP O57422 50 50
YIFTTTKNLKTPS O76125 79 79
WIFCSAKSLRTPS O61474 71 71
WIYATTKSIRTPS OPS2_SCHGR 75 75
OPSIN2 Length of motif = 13 Motif number = 2
Opsin motif II - 1
PCODE ST INT
GWSRYIPEGMQCS OPSD_CHICK 174 101
GWSRYIPEGMQCS OPSD_CANFA 174 101
GWSRYIPEGMQCS OPSD_TRIMA 174 101
GWSRYIPEGMQCS OPSD_RABIT 174 101
GWSRYIPEGMQCS OPSD_MOUSE 174 101
GWSRYIPEGMQCS OPSD_CRIGR 174 101
GWSRYIPEGLQCS OPSD_PIG 174 101
GWSRYIPEGLQCS OPSD_MACFA 174 101
GWSRYIPEGLQCS OPSD_HUMAN 174 101
GWSRYIPEGMQCS OPSD_BUFMA 174 101
GWSRYIPEGMQCS OPSD_GAMAF 174 101
GWSRYIPEGMQCS OPSD_AMBTI 174 101
GWSRYIPEGMQCS OPSD_BUFBU 174 101
GWSRYIPEGMQCS OPSD_RANCA 174 101
GWSRYIPEGMQCS OPSD_RANPI 174 101
GWSRYIPEGMQCS OPSD_RANTE 174 101
GWSRYIPEGMQCS OPSF_ANGAN 174 101
GWSRYIPEGMQCS OPSD_NEOSA 174 101
GWSRYIPEGMQCS OPSD_ORYLA 174 101
GWSRYIPEGMQCS OPSD_SARDI 174 101
GWSRYIPEGMQCS OPSD_POERE 174 101
GWSRYIPEGMQCS OPSD_ANOCA 174 101
GWSRYIPEGMQCS OPSD_ZEUFA 174 101
GWSRYIPEGMQCS OPSD_ASTFA 174 101
GWSRYIPEGMQCS OPSD_PHOVI 174 101
GWSRYIPEGMQCS OPSD_PHOGR 174 101
GWSRYIPEGMQCS OPSD_CYPCA 174 101
GWSRYIPEGMQCS OPSD_BOVIN 174 101
GWSRYIPEGMQCS OPSD_RAT 174 101
GWSRYIPEGMQCS OPSD_ALLMI 174 101
GWSRYIPEGMQCS OPSD_XENLA 174 101
GWSRYIPQGMQCS OPSD_SHEEP 174 101
GWSRYIPEGMQCS OPSD_DELDE 174 101
GWSRYIPEGMQCS OPSD_GLOME 174 101
GWSRYIPEGMQCS OPSD_MESBI 174 101
GWSRYIPEGMQCS OPSD_TURTR 174 101
GWSRYIPEGMQCS OPSU_BRARE 174 101
GWSRYIPEGMQCS OPSD_CARAU 174 101
GWSRYIPEGMQCS O93459 174 101
GWSRYIPEGLQCS OPSB_CONCO 174 101
GWSRYIPEGMQCS OPSD_POMMI 174 101
GWSRYIPEGMQCS OPSD_ANGAN 174 101
GWSRYIPEGMQCS OPSD_LAMJA 174 101
GWSRYIPEGLQCS OPSD_RAJER 174 101
GWSRYIPEGMQCS OPSG_CARAU 174 101
GWSRYIPEGLQCS O93441 174 101
GWSRYLPEGMQCS OPSD_PETMA 174 101
GWSRFIPEGMQCS OPSB_GECGE 174 101
GWSRYVPEGLQCS O57605 169 101
GWSRYIPEGMQCS OPSB_ANOCA 174 101
GWSRYWPHGLKTS OPSG_ASTFA 187 101
GWSRYWPHGLKTS OPSR_ANOCA 193 101
GWSRYWPHGLKTS OPSG_GECGE 189 101
GWSRYWPHGLKTS OPSG_HUMAN 190 101
GWSRYWPHGLKTS OPSR_CHICK 187 101
GWSRYMPEGMQCS OPSG_CHICK 174 101
GWSRYIPEGLQCS OPSI_ASTFA 177 101
GWSRYMPEGLQCS OPSV_XENLA 169 101
GWSRYWPHGLKTS OPSR_ORYLA 187 101
GWSRYWPHGLKTS OPSH_ASTFA 185 101
GWSRYIPEGIQCS OPSH_CARAU 174 101
GWSRYWPHGLKTS OPSR_HUMAN 190 101
GWSRFWPHGLKTS OPSR_XENLA 189 101
GWSRYWPHGLKTS O62860 190 101
GWSRYWPHGLKTS OPSR_CAPHI 190 101
GWSRFWPHGLKTS OPSR_CARAU 187 101
GWSRFIPEGLQCS OPSB_MOUSE 169 101
GWSRFIPEGLQCS OPSB_RAT 169 101
GWSRYWPHGLKTS OPSR_ASTFA 187 101
GWSRYMPEGLQCS OPSV_CHICK 169 101
GWSRYWPHGLKTS Q90226 185 101
GWSRFIPEGLQCS OPSB_HUMAN 171 101
GWSRYVPEGNLTS OPS1_DROME 187 101
GWSRYVPEGNLTS OPS1_DROPS 188 102
GWSRYWPYGLKTS OPSG_RABIT 190 101
GWSRYVPEGNLTS OPS1_CALVI 185 101
GWSRYIAEGLQCS OPSB_SAIBB 172 101
GWSRFVPEGLQCS OPSB_BOVIN 172 101
GWSRYWPYGLKTS OPSG_MOUSE 185 101
GWSRYWPYGLKTS O35476 185 101
GWSRYIPEGLGCS OPSV_ORYLA 166 100
GWSRYIPEGLQCS OPSB_ASTFA 179 101
GWSRFIAEGLQCS O46554 172 101
XWSRLIPEGLQCS O70363 169 101
GWSSYVPEGLRTS OPSP_CHICK 168 101
GWSRYIPEGIQVS OPSG_ORYLA 175 101
GWSRYVPEGNLTS OPS1_LIMPO 184 101
GWSRYVPEGNLTS OPS2_LIMPO 184 101
GWSRYIPEGLQCS OPSB_CARAU 178 101
GWSSYVPEGLRTS OPSP_COLLI 170 101
GWSRYIPEGLQCS OPSB_CHICK 181 101
GWSRYIPEGIGTA OPSU_CARAU 167 101
GWSRYIPEGMQCS OPSB_ORYLA 180 101
GWSAYVPEGNLTA OPS2_DROME 194 101
GWSSYVPEGNLTA OPS2_DROPS 194 101
GWNRYVPEGNMTA OPSD_CATBO 191 101
GWNRYVPEGNMTA OPSD_CAMAB 191 101
GWNRYVPEGNMTA OPSD_APIME 189 101
GWNRYVPEGNMTA OPS1_SCHGR 191 101
GWNRYVPEGNMTA OPSD_SPHSP 189 101
GWNRYVPEGNLTG OPSD_PROCL 190 101
GWGSYQLEGVMTS OPSP_ICTPU 167 101
NWGAYVPEGILTS OPSD_OCTDO 174 103
GWGNYILEGILDS OPS2_HEMSA 192 102
SWGRFVPEGYLTS OPS3_DROPS 193 100
TWGRFVPEGYLTS OPS3_DROME 194 100
GWGAYIPEGFQTS OPS1_PATYE 190 103
FWDRFVPEGYLTS OPS4_DROPS 191 100
GWGAYVLEGVLCN OPSD_SEPOF 173 103
FWDRFVPEGYLTS OPS4_DROVI 194 100
GWNRYVPEGNMTA O76124 193 101
GWGAYTLEGVLCN OPSD_TODPA 172 103
GWGAYTLEGVLCN OPSD_LOLFO 173 103
GWNRYVPEGNMTA OPS6_DROME 184 101
FWDRFVPEGYLTS OPS4_DROME 190 100
GWNRYVPEGNMTA O76123 193 101
VWGRFVPEGFLTS O61473 185 100
VWGRYTTEGFLTT OPSB_APIME 193 100
VWGRFVPEGFLTS OPSV_APIME 184 100
GWSSYVPEGLRIS O57422 165 102
GWNRYVPEGNMTV O76125 193 101
VWGRFVPEGFLTS O61474 184 100
IWSRFTAEGFLTT OPS2_SCHGR 189 101
OPSIN3 Length of motif = 13 Motif number = 3
Opsin motif III - 1
PCODE ST INT
PIFMTIPAFFAKS OPSD_CHICK 285 98
PIFMTLPAFFAKS OPSD_CANFA 285 98
PIFMTLPAFFAKS OPSD_TRIMA 285 98
PIFMTIPAFFAKS OPSD_RABIT 285 98
PIFMTLPAFFAKS OPSD_MOUSE 285 98
PIFMTLPAFFAKS OPSD_CRIGR 285 98
PIFMTIPAFFAKS OPSD_PIG 285 98
PIFMTIPAFFAKS OPSD_MACFA 285 98
PIFMTIPAFFAKS OPSD_HUMAN 285 98
PVFMTIPAFFAKS OPSD_BUFMA 285 98
PLFMTIPAFFAKS OPSD_GAMAF 285 98
PIFMTVPAFFAKS OPSD_AMBTI 285 98
PIFMTVPAFFAKS OPSD_BUFBU 285 98
PIFMTVPAFFAKS OPSD_RANCA 285 98
PIFMTVPAFFAKS OPSD_RANPI 285 98
PIFMTVPAFFAKS OPSD_RANTE 285 98
PIFMTIPAFFAKS OPSF_ANGAN 285 98
PLFMTIPAFFAKS OPSD_NEOSA 285 98
PLFMTIPAFFAKS OPSD_ORYLA 285 98
PLFMTIPAFFAKS OPSD_SARDI 285 98
PLFMTVPAFFAKS OPSD_POERE 285 98
PVFMTIPAFFAKS OPSD_ANOCA 285 98
PVFMTIPAFFAKS OPSD_ZEUFA 285 98
PIFMTVPAFFAKS OPSD_ASTFA 285 98
PIFMTLPAFFAKA OPSD_PHOVI 285 98
PIFMTLPAFFAKA OPSD_PHOGR 285 98
PVFMTVPAFFAKS OPSD_CYPCA 285 98
PIFMTIPAFFAKT OPSD_BOVIN 285 98
PIFMTLPAFFAKT OPSD_RAT 285 98
PVFMTIPAFFAKS OPSD_ALLMI 285 98
PVFMTVPAFFAKS OPSD_XENLA 285 98
PIFMTIPAFFAKS OPSD_SHEEP 285 98
PIFMTIPSFFAKS OPSD_DELDE 285 98
PIFMTIPSFFAKS OPSD_GLOME 285 98
PIFMTIPSFFAKS OPSD_MESBI 285 98
PIFMTIPSFFAKS OPSD_TURTR 285 98
PVFMTLPAFFAKT OPSU_BRARE 285 98
PVFMTLPAFFAKT OPSD_CARAU 285 98
PIFMTIPAFFAKA O93459 285 98
PIFMTVPSFFAKS OPSB_CONCO 285 98
PLFMTIPAFFAKS OPSD_POMMI 285 98
PVFMTVPSFFAKS OPSD_ANGAN 285 98
ATFMTLPAFFAKS OPSD_LAMJA 285 98
PFFMTVPAFFAKS OPSD_RAJER 285 98
AKFMAIPAFFSKS OPSG_CARAU 285 98
PVFMTIPSFFAKS O93441 285 98
ATFMTVPAFFAKT OPSD_PETMA 285 98
VTFMTIPAFFSKS OPSB_GECGE 285 98
LRLVTIPAFFSKS O57605 280 98
ATLMSVPAFFSKS OPSB_ANOCA 285 98
PLAAALPAYFAKS OPSG_ASTFA 298 98
PLAAALPAYFAKS OPSR_ANOCA 304 98
PLAAALPAYFAKS OPSG_GECGE 300 98
PLMAALPAFFAKS OPSG_HUMAN 301 98
PLAAALPAYFAKS OPSR_CHICK 298 98
ATLMAVPAFFSKS OPSG_CHICK 285 98
AQFMAVPAFFSKS OPSI_ASTFA 288 98
LRLVTIPAFFSKS OPSV_XENLA 280 98
PLAAAMPAYFAKS OPSR_ORYLA 298 98
PLAAAMPAYFAKS OPSH_ASTFA 296 98
AQFMAIPAFFSKT OPSH_CARAU 285 98
PLMAALPAYFAKS OPSR_HUMAN 301 98
PLAAALPAYFAKS OPSR_XENLA 300 98
PLVAALPAYFAKS O62860 301 98
PLVAALPAYFAKS OPSR_CAPHI 301 98
PLAAAMPAYFAKS OPSR_CARAU 298 98
LRLVTIPAFFSKS OPSB_MOUSE 280 98
LRLVTIPAFFSKS OPSB_RAT 280 98
PLAAAMPAYFAKS OPSR_ASTFA 298 98
LRLVTIPAFFSKS OPSV_CHICK 280 98
PLAAAMPAYFAKS Q90226 296 98
LRLVTIPSFFSKS OPSB_HUMAN 282 98
PLNTIWGACFAKS OPS1_DROME 308 108
PLNTIWGACFAKS OPS1_DROPS 309 108
PLVAAIPSYFAKS OPSG_RABIT 301 98
PLNTIWGACFAKS OPS1_CALVI 306 108
LRLVSIPAFFSKS OPSB_SAIBB 283 98
LRLVTIPAFFSKS OPSB_BOVIN 283 98
PLVASLPSYFAKS OPSG_MOUSE 296 98
PLVASLPSYFAKS O35476 296 98
YRLVTIPAFFSKS OPSV_ORYLA 277 98
LRLGTIPSCFSKA OPSB_ASTFA 290 98
LRLVTIPSFFSKS O46554 283 98
LRLVTIPAFFSKS O70363 280 98
PVLASLPSYFSKT OPSP_CHICK 277 96
AMSMAIPSFFSKS OPSG_ORYLA 286 98
PLATIWGSVFAKA OPS1_LIMPO 307 110
PLATIWGSVFAKA OPS2_LIMPO 307 110
LRMATIPSCLSKA OPSB_CARAU 289 98
PALASLPSYFSKT OPSP_COLLI 279 96
VGLASIPSVFSKS OPSB_CHICK 292 98
YRLVAIPSLFSKS OPSU_CARAU 278 98
LRLATIPSCVSKA OPSB_ORYLA 291 98
PLTTIWGATFAKT OPS2_DROME 315 108
PLTTIWGATFAKT OPS2_DROPS 315 108
PLFTIWGSLFAKA OPSD_CATBO 312 108
PLFTIWGSLFAKA OPSD_CAMAB 312 108
PLFTIWGSLFAKA OPSD_APIME 310 108
PLLTIWGSLFAKA OPS1_SCHGR 312 108
PLATIWCSLFAKA OPSD_SPHSP 310 108
PVYTIWGYVFAKA OPSD_PROCL 310 107
PVIGTIPAYLAKS OPSP_ICTPU 277 97
PYAAELPVLFAKA OPSD_OCTDO 295 108
PLVSTLPALLAKS OPS2_HEMSA 314 109
PGATMIPACTCKM OPS3_DROPS 316 110
PGATMIPACACKM OPS3_DROME 317 110
PLVSELPMMLAKS OPS1_PATYE 311 108
PGATMIPACTCKL OPS4_DROPS 314 110
PYAAQLPVMFAKA OPSD_SEPOF 294 108
PGATMIPACTCKL OPS4_DROVI 317 110
PLATIWGSVFAKA O76124 314 108
PYAAQLPVMFAKA OPSD_TODPA 293 108
PYAAQLPVMFAKA OPSD_LOLFO 294 108
PLSTICGSVFAKA OPS6_DROME 306 109
QGATMIPACTCKL OPS4_DROME 313 110
PLGTIWGSVFAKA O76123 314 108
PGVTMIPACTCKF O61473 308 110
PVSTMLPAVFAKT OPSB_APIME 315 109
PGVTMIPACTCKA OPSV_APIME 307 110
PYSKTVPAVIAKA O57422 283 105
PVSTIWGSVFAKA O76125 314 108
PGITMIPACACKF O61474 307 110
PLSTMIPAVTAKI OPS2_SCHGR 312 110
User query: Display/Full Code "OPSIN"