WORKLIST ENTRIES (1):
HTHREPRESSR View alignment View Structure Lambda-repressor HTH signature
Type of fingerprint: COMPOUND with 2 elements
Links:
PRINTS; PR00030 HTHCRO; PR00024 HOMEOBOX; PR00025 ANTENNAPEDIA
PRINTS; PR00026 ENGRAILED; PR00027 PAIREDBOX; PR00028 POUDOMAIN
PRINTS; PR00029 OCTAMER
INTERPRO; IPR000047
PDB; 1PRA 3Dinfo
SCOP; 1PRA
CATH; 1PRA
Creation date 23-MAR-1993; UPDATE 20-JUN-1999
1. BRENNAN, R.G. AND MATTHEWS, B.W.
The helix-turn-helix DNA binding motif.
J.BIOL.CHEM. 264 1903-1906 (1989).
2. SAUER, R.T.,YOCUM, R.R., DOOLITTLE, R.F., LEWIS, M. AND PABO, C.O.
Homology among DNA-binding proteins suggests use of a conserved super-
secondary structure.
NATURE 298 447-451 (1982)
3. PABO, C.O. AND SAUER, R.T.
Protein-DNA recognition.
ANNU.REV.BIOCHEM. 53 293-321 (1984).
Helix-turn-helix (HTH) motifs are found in all known DNA binding proteins
that regulate gene expression. The motif consists of approximately 20
residues and is characterised by 2 alpha-helices, which make intimate
contacts with the DNA and are joined by a short turn. The second helix of
the HTH motif binds to DNA via a number of hydrogen bonds and hydrophobic
interactions, which occur between specific side chains and the exposed
bases and thymine methyl groups within the major groove of the DNA [1]. The
first helix helps to stabilise the structure [2].
The HTH motif is very similar in sequence and structure to the N-terminal
region of the lamda [3] and other repressor proteins, and has also been
identified in many other DNA-binding proteins on the basis of sequence and
structural similarity [1]. One of the principal differences between HTH
motifs in these different proteins arises from the stereochemical
requirement for glycine in the turn, which is needed to avoid steric
interference of the beta-carbon with the main chain: for cro and other
repressors the Gly appears to be mandatory, while for many of the homeotic
and other DNA-binding proteins the requirement is relaxed.
HTHREPRESSR is a 2-element fingerprint that provides a signature for the HTH
motif of lambda and other repressors, and various homeotic proteins. The
fingerprint was derived from an initial alignment of 20 sequences (after
Brennan and Matthews [1]): the motifs span the complete motif and hinge on
the conserved glycine, differing from the equivalent cro motifs in terms of
the number and distribution of charged and aromatic residues. Four
iterations on OWL19.1 were required to reach convergence, at which point a
true set comprising 102 sequences was identified. This set includes
repressor proteins, an atypical cro sequence, RNA polymerase sigma factors,
homeotic proteins, etc., all of which have Gly conserved in the turn.
An update on SPTR37_9f identified a true set of 103 sequences.
SUMMARY INFORMATION
103 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
2| 103 103
--+-----------
| 1 2
True positives..
DLX2_BRARE HMDL_DROME DLX5_BRARE DLX2_MOUSE
DLX2_HUMAN DLX1_BRARE HMD3_XENLA DLX6_BRARE
DLX5_RAT DLX5_MOUSE DLX5_CHICK DLX4_BRARE
DLX1_MOUSE DLX3_AMBME DLX3_BRARE DLX3_HUMAN
DLX3_MOUSE DLX3_NOTVI DLX3_PLEWA HMD2_XENLA
HMDL_BRAFL HMD1_CHICK Q91622 CDX2_HUMAN
CDX2_MESAU HMD4_XENLA HMD1_XENLA CDX1_HUMAN
CDX1_MOUSE Q17243 P79788 CDX2_MOUSE
DLX7_BRARE DLX8_BRARE Q21169 CDX4_HUMAN
Q90320 Q90262 CDX4_MOUSE DLX7_MOUSE
HM16_CAEEL Q04787 HMD1_CAEEL HMED_XENLA
HME2_CHICK HME2_BRARE HMEN_BOMMO HMIN_BOMMO
HME3_BRARE HME1_BRARE HM23_CAEEL O17588
HLX1_MOUSE HLX1_HUMAN Q43428 DBX_MOUSE
HMEN_ARTSF Q43427 ATH5_ARATH Q06453
HAT1_ARATH HAT5_ARATH O08686 O43518
ATH6_ARATH Q43425 O93236 Q43529
GSBD_DROME HAT7_ARATH PBX1_HUMAN PBX1_MOUSE
PBX2_HUMAN PBX2_MOUSE Q39941 EXD_DROME
O46118 HAT4_ARATH O54817 O88933
Q40782 Q39862 Q14333 O43812
SIX1_HUMAN SIX2_MOUSE O57407 O93534
Q90881 P91625 MTA1_YEAST HX1A_MAIZE
Q41812 MTA0_YEAST RPSF_BACME RPSF_BACLI
O86069 Q52775 FX24_RHILV HMCU_DROME
RPSF_BACSU O32725 RPSG_CLOAB
PROTEIN TITLES
DLX2_BRARE HOMEOBOX PROTEIN DLX-2 - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBR
HMDL_DROME HOMEOTIC DISTAL-LESS PROTEIN (PROTEIN BRISTA) - DROSOPHILA M
DLX5_BRARE HOMEOBOX PROTEIN DLX-5 - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBR
DLX2_MOUSE HOMEOBOX PROTEIN DLX-2 (HOMEOBOX PROTEIN TES-1) - MUS MUSCUL
DLX2_HUMAN HOMEOBOX PROTEIN DLX-2 - HOMO SAPIENS (HUMAN).
DLX1_BRARE HOMEOBOX PROTEIN DLX-1 - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBR
HMD3_XENLA HOMEOBOX PROTEIN DLL-3 (XDLL-3) - XENOPUS LAEVIS (AFRICAN CL
DLX6_BRARE HOMEOBOX PROTEIN DLX-6 - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBR
DLX5_RAT HOMEOBOX PROTEIN DLX-5 (DLX-3) (RDLX) - RATTUS NORVEGICUS (R
DLX5_MOUSE HOMEOBOX PROTEIN DLX-5 - MUS MUSCULUS (MOUSE).
DLX5_CHICK HOMEOBOX PROTEIN DLX-5 - GALLUS GALLUS (CHICKEN).
DLX4_BRARE HOMEOBOX PROTEIN DLX-4 - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBR
DLX1_MOUSE HOMEOBOX PROTEIN DLX-1 - MUS MUSCULUS (MOUSE).
DLX3_AMBME HOMEOBOX PROTEIN DLX-3 - AMBYSTOMA MEXICANUM (AXOLOTL).
DLX3_BRARE HOMEOBOX PROTEIN DLX-3 - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBR
DLX3_HUMAN HOMEOBOX PROTEIN DLX-3 - HOMO SAPIENS (HUMAN).
DLX3_MOUSE HOMEOBOX PROTEIN DLX-3 - MUS MUSCULUS (MOUSE).
DLX3_NOTVI HOMEOBOX PROTEIN DLX-3 (BOX-4) (NVHBOX-4) - NOTOPHTHALMUS VI
DLX3_PLEWA DISTAL-LESS LIKE PROTEIN DLX-3 - PLEURODELES WALTLII (IBERIA
HMD2_XENLA HOMEOBOX PROTEIN DLL-2 (XDLL-2) - XENOPUS LAEVIS (AFRICAN CL
HMDL_BRAFL HOMEOBOX PROTEIN DLL HOMOLOG - BRANCHIOSTOMA FLORIDAE (FLORI
HMD1_CHICK HOMEOBOX PROTEIN CHOX-CAD - GALLUS GALLUS (CHICKEN).
Q91622 XCAD2 PROTEIN - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
CDX2_HUMAN HOMEOBOX PROTEIN CDX-2 (CAUDAL-TYPE HOMEOBOX PROTEIN 2) (CDX
CDX2_MESAU HOMEOBOX PROTEIN CDX-2 (CAUDAL-TYPE HOMEOBOX PROTEIN 2) - ME
HMD4_XENLA HOMEOBOX PROTEIN DLL-4 (XDLL-4) - XENOPUS LAEVIS (AFRICAN CL
HMD1_XENLA HOMEOBOX PROTEIN DLL-1 (DLL) (XDLL) - XENOPUS LAEVIS (AFRICA
CDX1_HUMAN HOMEOBOX PROTEIN CDX-1 (CAUDAL-TYPE HOMEOBOX PROTEIN 1) - HO
CDX1_MOUSE HOMEOBOX PROTEIN CDX-1 (CAUDAL-TYPE HOMEOBOX PROTEIN 1) - MU
Q17243 CAD PROTEIN - BOMBYX MORI (SILK MOTH).
P79788 HOMEOBOX PROTEIN - GALLUS GALLUS (CHICKEN).
CDX2_MOUSE HOMEOBOX PROTEIN CDX-2 (CAUDAL-TYPE HOMEOBOX PROTEIN 2) - MU
DLX7_BRARE HOMEOBOX PROTEIN DLX-7 - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBR
DLX8_BRARE HOMEOBOX PROTEIN DLX-8 - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBR
Q21169 K03A11.3 PROTEIN - CAENORHABDITIS ELEGANS.
CDX4_HUMAN HOMEOBOX PROTEIN CDX-4 (CAUDAL-TYPE HOMEOBOX PROTEIN 4) - HO
Q90320 CAUDAL HOMOLOG CDX1 - CYPRINUS CARPIO (COMMON CARP).
Q90262 ZF-CAD1 PROTEIN - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBRA DANIO
CDX4_MOUSE HOMEOBOX PROTEIN CDX-4 (CAUDAL-TYPE HOMEOBOX PROTEIN 4) - MU
DLX7_MOUSE HOMEOBOX PROTEIN DLX-7 - MUS MUSCULUS (MOUSE).
HM16_CAEEL HOMEOBOX PROTEIN ENGRAILED-LIKE CEH-16 - CAENORHABDITIS ELEG
Q04787 BRAIN-SPECIFIC HOMEOBOX PROTEIN - DROSOPHILA MELANOGASTER (F
HMD1_CAEEL PUTATIVE HOMEOBOX PROTEIN C28A5.4 - CAENORHABDITIS ELEGANS.
HMED_XENLA HOMEOBOX PROTEIN ENGRAILED-2B (EN-2B) (EN2 MABEN) - XENOPUS
HME2_CHICK HOMEOBOX PROTEIN ENGRAILED-2 (GG-EN-2) - GALLUS GALLUS (CHIC
HME2_BRARE HOMEOBOX PROTEIN ENGRAILED-2 (ZF-EN-2) - BRACHYDANIO RERIO (
HMEN_BOMMO SEGMENTATION POLARITY HOMEOBOX PROTEIN ENGRAILED - BOMBYX MO
HMIN_BOMMO HOMEOBOX PROTEIN INVECTED - BOMBYX MORI (SILK MOTH).
HME3_BRARE HOMEOBOX PROTEIN ENGRAILED-3 (ZF-EN-1) - BRACHYDANIO RERIO (
HME1_BRARE HOMEOBOX PROTEIN ENGRAILED-1 - BRACHYDANIO RERIO (ZEBRAFISH)
HM23_CAEEL HOMEOBOX PROTEIN CEH-23 - CAENORHABDITIS ELEGANS.
O17588 C16C2.1 PROTEIN - CAENORHABDITIS ELEGANS.
HLX1_MOUSE HOMEOBOX PROTEIN HLX1 - MUS MUSCULUS (MOUSE).
HLX1_HUMAN HOMEOBOX PROTEIN HLX1 (HOMEOBOX PROTEIN HB24) - HOMO SAPIENS
Q43428 DNA-BINDING PROTEIN - DAUCUS CAROTA (CARROT).
DBX_MOUSE HOMEOBOX PROTEIN DBX - MUS MUSCULUS (MOUSE).
HMEN_ARTSF HOMEOBOX PROTEIN ENGRAILED - ARTEMIA SANFRANCISCANA (BRINE S
Q43427 DNA-BINDING PROTEIN - DAUCUS CAROTA (CARROT).
ATH5_ARATH HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-5 (HD-ZIP PROTEIN ATHB-
Q06453 HOMEOBOX PROTEIN ARISTALESS - DROSOPHILA MELANOGASTER (FRUIT
HAT1_ARATH HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT1 (HD-ZIP PROTEIN 1) - AR
HAT5_ARATH HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 (HD-ZIP PROTEIN 5) (HD-
O08686 BARX2 - MUS MUSCULUS (MOUSE).
O43518 BARX2 - HOMO SAPIENS (HUMAN).
ATH6_ARATH HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6 (HD-ZIP PROTEIN ATHB-
Q43425 DNA-BINDING PROTEIN - DAUCUS CAROTA (CARROT).
O93236 DHARMA - BRACHYDANIO RERIO (ZEBRAFISH) (ZEBRA DANIO).
Q43529 HOMEOBOX - LYCOPERSICON ESCULENTUM (TOMATO).
GSBD_DROME GOOSEBERRY DISTAL PROTEIN (BSH9) - DROSOPHILA MELANOGASTER (
HAT7_ARATH HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 (HD-ZIP PROTEIN 7) (HD-
PBX1_HUMAN PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR-1 (HOMEOBOX PROTEIN
PBX1_MOUSE PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR-1 (HOMEOBOX PROTEIN
PBX2_HUMAN PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR-2 (HOMEOBOX PROTEIN
PBX2_MOUSE PRE-B-CELL LEUKEMIA TRANSCRIPTION FACTOR-2 (HOMEOBOX PROTEIN
Q39941 HOMEODOMAIN CONTAINING PROTEIN (HAHB-1) - HELIANTHUS ANNUUS
EXD_DROME HOMEOBOX PROTEIN EXTRADENTICLE - DROSOPHILA MELANOGASTER (FR
O46118 DNA-BINDING PROTEIN - DUGESIA TIGRINA (PLANARIAN).
HAT4_ARATH HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT4 (HD-ZIP PROTEIN 4) (HD-
O54817 EXTRAEMBRYONIC, SPERMATOGENESIS, HOMEOBOX 1 (PAIRED-LIKE HOM
O88933 HOMEOBOX PROTEIN SPX1 - MUS MUSCULUS (MOUSE).
Q40782 HOMEOBOX-LEUCINE ZIPPER PROTEIN - PIMPINELLA BRACHYCARPA.
Q39862 HOMEOBOX-LEUCINE ZIPPER PROTEIN - GLYCINE MAX (SOYBEAN).
Q14333 FACIOSCAPULOHUMERAL MUSCULAR DYSTROPHY (FSHD) GENE REGION, D
O43812 DUX1 PROTEIN - HOMO SAPIENS (HUMAN).
SIX1_HUMAN HOMEOBOX PROTEIN SIX1 - HOMO SAPIENS (HUMAN).
SIX2_MOUSE HOMEOBOX PROTEIN SIX2 - MUS MUSCULUS (MOUSE).
O57407 HOMEOBOX PROTEIN - XENOPUS LAEVIS (AFRICAN CLAWED FROG).
O93534 HOMEOBOX PROTEIN BIX2 - XENOPUS LAEVIS (AFRICAN CLAWED FROG)
Q90881 HOMEOBOX PROTEIN - GALLUS GALLUS (CHICKEN).
P91625 LADYBIRD EARLY HOMEODOMAIN TRANSCRIPTION FACTOR - DROSOPHILA
MTA1_YEAST MATING-TYPE PROTEIN A-1 - SACCHAROMYCES CEREVISIAE (BAKER'S
HX1A_MAIZE HOMEOBOX PROTEIN HOX1A - ZEA MAYS (MAIZE).
Q41812 HOMEOBOX 2A PROTEIN - ZEA MAYS (MAIZE).
MTA0_YEAST MATING-TYPE PROTEIN A-1, INCOMPLETELY SPLICED - SACCHAROMYCE
RPSF_BACME RNA POLYMERASE SIGMA-F FACTOR (STAGE II SPORULATION PROTEIN
RPSF_BACLI RNA POLYMERASE SIGMA-F FACTOR (STAGE II SPORULATION PROTEIN
O86069 FNR-TYPE TRANSCRIPTIONAL REGULATOR FNRND - RHIZOBIUM ETLI.
Q52775 FNRN - RHIZOBIUM LEGUMINOSARUM.
FX24_RHILV PROBABLE TRANSCRIPTIONAL ACTIVATOR (ORF-240) - RHIZOBIUM LEG
HMCU_DROME HOMEOBOX PROTEIN CUT - DROSOPHILA MELANOGASTER (FRUIT FLY).
RPSF_BACSU RNA POLYMERASE SIGMA-F FACTOR (STAGE II SPORULATION PROTEIN
O32725 RNA POLYMERASE SIGMA FACTOR - BACILLUS SPHAERICUS.
RPSG_CLOAB RNA POLYMERASE SIGMA-G FACTOR - CLOSTRIDIUM ACETOBUTYLICUM.
SCAN HISTORY
OWL19_1 4 500 NSINGLE
OWL26_0 1 900 NSINGLE
SPTR37_9f 1 850 NSINGLE
INITIAL MOTIF SETS
HTHREPRESSR1 Length of motif = 10 Motif number = 1
Lambda-repressor HTH motif I - 1
PCODE ST INT
TQTELATKAG RCRO_BP434 17 17
TQTELATKAG NRL_2CRO 17 17
TQRAVAKALG RCRO_BPP22 11 11
GQRKVADALG RPC1_BPP22 24 24
NQAELAQKVG RPC1_BP434 15 15
GQTKTAKDLG RCRO_LAMBD 14 14
SQESVADKMG RPC1_LAMBD 31 31
GQTKTAKDLG NRL_4CROE 12 12
EKEEVAKKCG MTA0_YEAST 98 98
LVAAVADKAG DBH_RHIME 5 5
TLYDVAEYAG LACI_ECOLI 4 4
GTEKTAEAVG RPC2_LAMBD 24 24
SRQQLADLTG RPC_BPP2 18 18
TIKDVARLAG GALR_ECOLI 2 2
NKKQLADIFG VNU1_LAMBD 3 3
SQRELKNELG TRPR_ECOLI 65 65
RQAALGKMVG RPC2_BPP22 19 19
SGEQLGETLG BIRA_ECOLI 20 20
HTHREPRESSR2 Length of motif = 17 Motif number = 2
Lambda-repressor HTH motif I - 2
PCODE ST INT
GVKQQSIQLIEAGVTKR RCRO_BP434 26 -1
GVKQQSIQLIEAGVTKR NRL_2CRO 26 -1
GISDAAVSQWKEVIPEK RCRO_BPP22 20 -1
GINESQISRWKGDFIPK RPC1_BPP22 33 -1
GTTQQSIEQLENGKTKR RPC1_BP434 24 -1
GVYQSAINKAIHAGRKI RCRO_LAMBD 23 -1
GMGQSGVGALFNGINAL RPC1_LAMBD 40 -1
GVYQSAINKAIHAGRKI NRL_4CROE 21 -1
GITPLQVRVWVCNMRIK MTA0_YEAST 107 -1
GLSKADASSAVDAVFET DBH_RHIME 14 -1
GVSYQTVSRVVNQASHV LACI_ECOLI 13 -1
GVDKSQISRWKRDWIPK RPC2_LAMBD 33 -1
GVPYGTLSYYESGRSTP RPC_BPP2 27 -1
GVSVATVSRVINNSPKA GALR_ECOLI 11 -1
GASIRTIQNWQEQGMPV VNU1_LAMBD 12 -1
GAGIATITRGSNSLKAA TRPR_ECOLI 74 -1
GVSNVAISQWERSETEP RPC2_BPP22 28 -1
GMSRAAINKHIQTLRDW BIRA_ECOLI 29 -1
FINAL MOTIF SETS
HTHREPRESSR1 Length of motif = 10 Motif number = 1
Lambda-repressor HTH motif I - 1
PCODE ST INT
ERAELAASLG DLX2_BRARE 152 152
ERAELAASLG HMDL_DROME 153 153
ERAELAASLG DLX5_BRARE 154 154
ERAELAASLG DLX2_MOUSE 184 184
ERAELAASLG DLX2_HUMAN 181 181
ERAELAASLG DLX1_BRARE 157 157
ERAELAASLG HMD3_XENLA 166 166
ERAELAASLG DLX6_BRARE 154 154
ERAELAASLG DLX5_RAT 166 166
ERAELAASLG DLX5_MOUSE 166 166
ERAELAASLG DLX5_CHICK 165 165
ERAELAASLG DLX4_BRARE 166 166
ERAELAASLG DLX1_MOUSE 157 157
ERAELAAQLG DLX3_AMBME 155 155
ERAELAAQLG DLX3_BRARE 154 154
ERAELAAQLG DLX3_HUMAN 158 158
ERAELAAQLG DLX3_MOUSE 158 158
ERAELAAQLG DLX3_NOTVI 154 154
ERAELAAQLG DLX3_PLEWA 155 155
ERAELAAQLG HMD2_XENLA 159 159
ERAELAAQLG HMDL_BRAFL 145 145
RKAELAAALG HMD1_CHICK 166 166
RKAELAAALG Q91622 179 179
RKAELAATLG CDX2_HUMAN 213 213
RKAELAATLG CDX2_MESAU 214 214
ERAELAASLG HMD4_XENLA 156 156
ERAELAASLG HMD1_XENLA 154 154
RKSELAANLG CDX1_HUMAN 183 183
RKSELAANLG CDX1_MOUSE 183 183
RKAELAVSLG Q17243 149 149
RKAELASSLG P79788 207 207
RKSELAATLG CDX2_MOUSE 214 214
ERADLAAKLG DLX7_BRARE 158 158
ERADLAAKLG DLX8_BRARE 152 152
EREELAQCLG Q21169 154 154
RKSELAVNLG CDX4_HUMAN 202 202
RKSELAVNLG Q90320 180 180
RKSELAVNLG Q90262 180 180
RKSELAVNLG CDX4_MOUSE 200 200
ERAQLAAQLG DLX7_MOUSE 145 145
RRQELAHELG HM16_CAEEL 132 132
ERVELATALG Q04787 161 161
DRAALAHELG HMD1_CAEEL 131 131
RRQSLAQELG HMED_XENLA 205 205
RRQSLAQELG HME2_CHICK 228 228
RRQSLAQELG HME2_BRARE 205 205
RRQSLAAELG HMEN_BOMMO 309 309
RRQSLAAELG HMIN_BOMMO 401 401
RRQALAQELG HME3_BRARE 201 201
RRQALARELG HME1_BRARE 172 172
ERENLAQRLG HM23_CAEEL 240 240
TRAKLAESLG O17588 64 64
DRKQLAAMLG HLX1_MOUSE 302 302
DRKQLAAMLG HLX1_HUMAN 305 305
RKLELARALG Q43428 126 126
DRKKLASKLG DBX_MOUSE 210 210
RRQDLARELG HMEN_ARTSF 278 278
RKVQLAKELG Q43427 66 66
RKVKLAQELG ATH5_ARATH 98 98
TREELAMKIG Q06453 114 114
QKLALAKKLG HAT1_ARATH 161 161
RKTQLAKKLG HAT5_ARATH 94 94
DRLDLAQSLG O08686 141 141
DRLDLAQSLG O43518 137 137
RKVKLAQELG ATH6_ARATH 88 88
RKVQLAKDLG Q43425 115 115
TRAELAQNTG O93236 144 144
RKVQLAKELG Q43529 116 116
TREELAQSTG GSBD_DROME 214 214
RKMQLAKALG HAT7_ARATH 78 78
AKEELAKKCG PBX1_HUMAN 265 265
AKEELAKKCG PBX1_MOUSE 265 265
AKEELAKKCG PBX2_HUMAN 276 276
AKEELAKKCG PBX2_MOUSE 276 276
RKMQLARALG Q39941 118 118
AKEELARKCG EXD_DROME 270 270
SRESLARSLG O46118 186 186
QKQALAKQLG HAT4_ARATH 155 155
ARVELARRLG O54817 147 147
ARVELARRLG O88933 215 215
QKLALAKRLG Q40782 165 165
QKLALAKQLG Q39862 140 140
AREELARETG Q14333 585 585
AREELARETG O43812 123 123
EKRELAEATG SIX1_HUMAN 153 153
EKRELAEATG SIX2_MOUSE 153 153
QREELARQMG O57407 112 112
QREELARQMG O93534 112 112
SYTELAAKSG Q90881 181 181
DRDEIAASLG P91625 382 382
EKEEVAKKCG MTA1_YEAST 99 99
VKESLAEELG HX1A_MAIZE 588 588
TKESLAQELG Q41812 1063 1063
EKEEVAKKCG MTA0_YEAST 99 99
TQSEVAARLG RPSF_BACME 220 220
TQSEVADRLG RPSF_BACLI 220 220
SRAEIADFLG O86069 190 190
SRAEIADFLG Q52775 190 190
SRAEIADFLG FX24_RHILV 190 190
TIEFLANELG HMCU_DROME 1774 1774
TQSEVAERLG RPSF_BACSU 220 220
TIQELAQVLG O32725 134 134
TQMEVADEIG RPSG_CLOAB 227 227
HTHREPRESSR2 Length of motif = 17 Motif number = 2
Lambda-repressor HTH motif II - 1
PCODE ST INT
GLTQTQVKIWFQNRRSK DLX2_BRARE 161 -1
GLTQTQVKIWFQNRRSK HMDL_DROME 162 -1
GLTQTQVKIWFQNRRSK DLX5_BRARE 163 -1
GLTQTQVKIWFQNRRSK DLX2_MOUSE 193 -1
GLTQTQVKIWFQNRRSK DLX2_HUMAN 190 -1
GLTQTQVKIWFQNKRSK DLX1_BRARE 166 -1
GLTQTQVKIWFQNKRSK HMD3_XENLA 175 -1
GLTQTQVKIWFQNKRSK DLX6_BRARE 163 -1
GLTQTQVKIWFQNKRSK DLX5_RAT 175 -1
GLTQTQVKIWFQNKRSK DLX5_MOUSE 175 -1
GLTQTQVKIWFQNKRSK DLX5_CHICK 174 -1
GLTQTQVKIWFQNKRSK DLX4_BRARE 175 -1
GLTQTQVKIWFQNKRSK DLX1_MOUSE 166 -1
GLTQTQVKIWFQNRRSK DLX3_AMBME 164 -1
GLTQTQVKIWFQNRRSK DLX3_BRARE 163 -1
GLTQTQVKIWFQNRRSK DLX3_HUMAN 167 -1
GLTQTQVKIWFQNRRSK DLX3_MOUSE 167 -1
GLTQTQVKIWFQNRRSK DLX3_NOTVI 163 -1
GLTQTQVKIWFQNRRSK DLX3_PLEWA 164 -1
GLTQTQVKIWFQNRRSK HMD2_XENLA 168 -1
GLTQTQVKIWFQNRRSK HMDL_BRAFL 154 -1
GLTERQVKIWFQNRRAK HMD1_CHICK 175 -1
GLTERQVKIWFQNRRAK Q91622 188 -1
GLSERQVKIWFQNRRAK CDX2_HUMAN 222 -1
GLSERQVKIWFQNRRAK CDX2_MESAU 223 -1
GVTQTQVKIWFQNRRSK HMD4_XENLA 165 -1
GVTQTQVKIWFQNKRSK HMD1_XENLA 163 -1
GLTERQVKIWFQNRRAK CDX1_HUMAN 192 -1
GLTERQVKIWFQNRRAK CDX1_MOUSE 192 -1
GLSERQVKIWFQNRRAK Q17243 158 -1
GLSERQVKIWFQNRRAK P79788 216 -1
GLSERQVKIWFQNRRAK CDX2_MOUSE 223 -1
GLTQTQVKIWFQNKRSK DLX7_BRARE 167 -1
GLTQTQVKIWFQNKRSK DLX8_BRARE 161 -1
GLTATQVKIWFQNRRYK Q21169 163 -1
GLSERQVKIWFQNRRAK CDX4_HUMAN 211 -1
GLSERQVKIWFQNRRAK Q90320 189 -1
GLSERQVKIWFQNRRAK Q90262 189 -1
GLSERQVKIWFQNRRAK CDX4_MOUSE 209 -1
GLTQTQVKIWFQNKRSK DLX7_MOUSE 154 -1
GLNESQIKIWFQNKRAK HM16_CAEEL 141 -1
GLSETQVKTWFQNRRMK Q04787 170 -1
GLSQTQVKIWFQNRRSK HMD1_CAEEL 140 -1
GLNESQIKIWFQNKRAK HMED_XENLA 214 -1
GLNESQIKIWFQNKRAK HME2_CHICK 237 -1
GLNESQIKIWFQNKRAK HME2_BRARE 214 -1
GLAEAQIKIWFQNKRAK HMEN_BOMMO 318 -1
GLAEAQIKIWFQNKRAK HMIN_BOMMO 410 -1
GLNESQIKIWFQNKRAK HME3_BRARE 210 -1
GLNESQIKIWFQNKRAK HME1_BRARE 181 -1
GLSPSQVRIWFQNRRSK HM23_CAEEL 249 -1
GLSDNQVKVWFQNRRTK O17588 73 -1
GLTDAQVKVWFQNRRMK HLX1_MOUSE 311 -1
GLTDAQVKVWFQNRRMK HLX1_HUMAN 314 -1
GLQPRQIAIWFQNRRAR Q43428 135 -1
GLKDSQVKIWFQNRRMK DBX_MOUSE 219 -1
GLHENQIKIWFQNNRAK HMEN_ARTSF 287 -1
GLQPRQVAIWFQNRRAR Q43427 75 -1
GLQPRQVAIWFQNRRAR ATH5_ARATH 107 -1
GLTEARIQVWFQNRRAK Q06453 123 -1
GLTARQVEVWFQNRRAR HAT1_ARATH 170 -1
GLQPRQVAVWFQNRRAR HAT5_ARATH 103 -1
GLTQLQVKTWYQNRRMK O08686 150 -1
GLTQLQVKTWYQNRRMK O43518 146 -1
GLQPRQVAVWFQNRRAR ATH6_ARATH 97 -1
GLQPRQVAIWFQNRRAR Q43425 124 -1
GLSEETVRVWFKNRRAR O93236 153 -1
GLQPRQIAIWFQNRRAR Q43529 125 -1
GLTEARVQVWFSNRRAR GSBD_DROME 223 -1
GLQPRQIAIWFQNRRAR HAT7_ARATH 87 -1
GITVSQVSNWFGNKRIR PBX1_HUMAN 274 -1
GITVSQVSNWFGNKRIR PBX1_MOUSE 274 -1
GITVSQVSNWFGNKRIR PBX2_HUMAN 285 -1
GITVSQVSNWFGNKRIR PBX2_MOUSE 285 -1
GLQPRQIAIWFQNRRAR Q39941 127 -1
GITVSQVSNWFGNKRIR EXD_DROME 279 -1
GLPESRVQVWFQNRRAK O46118 195 -1
GLRARQVEVWFQNRRAR HAT4_ARATH 164 -1
GLPEPRVQVWFQNRRAK O54817 156 -1
GLPEPRVQVWFQNRRAK O88933 224 -1
GLRPRQVEVWFQNRRAR Q40782 174 -1
GLRARQVEVWFQNRRAR Q39862 149 -1
GLPESRIQIWFQNRRAR Q14333 594 -1
GLPESRIQIWFQNRRAR O43812 132 -1
GLTTTQVSNWFKNRRQR SIX1_HUMAN 162 -1
GLTTTQVSNWFKNRRQR SIX2_MOUSE 162 -1
GLPESRIQVWFQNRRSK O57407 121 -1
GLPESRIQVWFQNRRSK O93534 121 -1
GLTKRVLQVWFQNARAK Q90881 286 95
GLSNAQVITWFQNRRAK P91625 391 -1
GITPLQVRVWFINKRMR MTA1_YEAST 108 -1
GLTFRQVNKWFETRRHS HX1A_MAIZE 597 -1
GLTFNQISKWFSGTRHY Q41812 1072 -1
GITPLQVRVWVCNMRIK MTA0_YEAST 108 -1
GISQVQVSRLEKKILKQ RPSF_BACME 229 -1
GISQVQVSRLEKKILKQ RPSF_BACLI 229 -1
GLTIETVSRQLTRLRKE O86069 199 -1
GLTIETVSRQMTRLRKS Q52775 199 -1
GLTIETVSRQMTRLRKI FX24_RHILV 199 -1
GLATRTITNWFHNHRMR HMCU_DROME 1783 -1
GISQVQVSRLEKKILKQ RPSF_BACSU 229 -1
GISQVQVSRLEKKILAQ O32725 227 83
GISQAQVSRLEKTALKH RPSG_CLOAB 236 -1
User query: Display/Full Code "HTHREPRESSR"