WORKLIST ENTRIES (1):
HSVCAPSIDMCP View alignment Herpesvirus major capsid protein (MCP) signature
Type of fingerprint: COMPOUND with 9 elements
Links:
PRINTS; PR00233 ICOSAHEDRAL; PR00236 HSVCAPSIDP40; PR00865 HPVCAPSIDL1
INTERPRO; IPR000912
Creation date 21-SEP-1993; UPDATE 07-JUN-1999
1. TELFORD, E.A.R., WATSON, M.S., MCBRIDE, K. AND DAVISON, A.
The DNA sequence of equine Herpesvirus.
J.VIROL. 189(1) 304-316 (1992).
2. YAMADA, S., IMADA, T., WATANABE, W., HONDA, Y., NAKAJIMA-IIJIMA, S.,
SHIMIZU, Y. AND SEKIKAWA, K.
Nucleotide sequence and transcriptional mapping of the major capsid
protein gene of Pseudorabies virus.
VIROLOGY 185(1) 56-66 (1991).
3. ALBRECHT, J.-C., NICHOLAS, J., BILLER, D., CAMERON, K.R., BIESINGER, B.,
NEWMAN, C., WITTMANN, S., CRAXTON, M.A., COLEMAN, H., FLECKENSTEIN, B.
AND HONESS, R.W.
Primary structure of the Herpesvirus Saimiri genome.
J.VIROL. 66(8) 5047-5058 (1992).
The Herpesvirus major capsid protein (MCP) is the principal protein of the
icosahedral capsid, forming the main component of the hexavalent and
probably the pentavalent capsomeres. It shares similarity with all other
Herpesvirus major capsid proteins.
HSVCAPSIDMCP is a 9-element fingerprint that provides a signature for the
Herpesvirus major capsid proteins. The fingerprint was derived from an
initial alignment of 8 sequences: the motifs were drawn from conserved
regions spanning the full alignment length. A single iteration on OWL21.1
was required to reach convergence, no further sequences being identified
beyond the starting set.
An update on SPTR37_9f identified a true set of 22 sequences.
SUMMARY INFORMATION
22 codes involving 9 elements
0 codes involving 8 elements
0 codes involving 7 elements
0 codes involving 6 elements
0 codes involving 5 elements
0 codes involving 4 elements
0 codes involving 3 elements
0 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
9| 22 22 22 22 22 22 22 22 22
8| 0 0 0 0 0 0 0 0 0
7| 0 0 0 0 0 0 0 0 0
6| 0 0 0 0 0 0 0 0 0
5| 0 0 0 0 0 0 0 0 0
4| 0 0 0 0 0 0 0 0 0
3| 0 0 0 0 0 0 0 0 0
2| 0 0 0 0 0 0 0 0 0
--+----------------------------------------------
| 1 2 3 4 5 6 7 8 9
True positives..
VCAP_HSVEB O39283 Q65565 Q98139
P88917 O40925 Q04534 VCAP_PRVIS
VCAP_HSV11 P89442 Q66628 O36375
VCAP_EBV VCAP_HSVSA O41943 VCAP_VZVD
Q88528 VCAP_HSV6U VCAP_HSV7J Q69071
Q69063 VCAP_HCMVA
PROTEIN TITLES
VCAP_HSVEB MAJOR CAPSID PROTEIN (MCP) (CAPSID PROTEIN VP5) - EQUINE HER
O39283 COUNTERPART OF HSV-1 GENE UL19 AND VZV GENE 40 - EQUINE HERP
Q65565 MAJOR CAPSID PROTEIN - BOVINE HERPESVIRUS 1.
Q98139 MAJOR CAPSID PROTEIN - KAPOSI'S SARCOMA-ASSOCIATED HERPESVIR
P88917 ORF 25 - KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS (KSHV) (HUM
O40925 ORF 25 - KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS (KSHV) (HUM
Q04534 MAJOR CAPSID PROTEIN (MCP) - PSEUDORABIES VIRUS.
VCAP_PRVIS MAJOR CAPSID PROTEIN (MCP) (MCP142) - PSEUDORABIES VIRUS (ST
VCAP_HSV11 MAJOR CAPSID PROTEIN (MCP) (CAPSID PROTEIN VP5) - HERPES SIM
P89442 MAJOR CAPSID PROTEIN - HERPES SIMPLEX VIRUS (TYPE 2).
Q66628 CAPSID PROTEIN - EQUINE HERPESVIRUS 2.
O36375 MAJOR CAPSID PROTEIN - ALCELAPHINE HERPESVIRUS 1 (WILDEBEEST
VCAP_EBV MAJOR CAPSID PROTEIN (MCP) - EPSTEIN-BARR VIRUS (STRAIN B95-
VCAP_HSVSA MAJOR CAPSID PROTEIN (MCP) - HERPESVIRUS SAIMIRI (STRAIN 11)
O41943 MAJOR CAPSID PROTEIN - MURINE HERPESVIRUS 68.
VCAP_VZVD MAJOR CAPSID PROTEIN (MCP) - VARICELLA-ZOSTER VIRUS (STRAIN
Q88528 MAJOR CAPSID PROTEIN - TURKEY HERPESVIRUS.
VCAP_HSV6U MAJOR CAPSID PROTEIN (MCP) - HERPES SIMPLEX VIRUS (TYPE 6 /
VCAP_HSV7J MAJOR CAPSID PROTEIN (MCP) - HERPES SIMPLEX VIRUS (TYPE 7 /
Q69071 MAJOR CAPSID PROTEIN - HUMAN HERPESVIRUS 7.
Q69063 MAJOR CAPSID PROTEIN - HUMAN HERPESVIRUS 6.
VCAP_HCMVA MAJOR CAPSID PROTEIN (MCP) - HUMAN CYTOMEGALOVIRUS (STRAIN A
SCAN HISTORY
OWL21_1 1 100 NSINGLE
OWL25_2 1 100 NSINGLE
SPTR37_9f 2 23 NSINGLE
INITIAL MOTIF SETS
HSVCAPSIDMCP1 Length of motif = 24 Motif number = 1
VCAP motif I - 1
PCODE ST INT
FDALLGSYCNTLSLVRFLELGLSV VCAP_HSV11 53 53
FDVLLGTYCNTLTLVRFLELGLSV VCAP_HSVEB 51 51
FDALLGTYCSTLSLVRFLELGLSV VCAP_PRVIS 42 42
FDILLGTYCNTLNFVRFLELGLSV VCAP_VZVD 65 65
FEVLLGVYTNAIQYVRFLETALAV VCAP_EBV 51 51
FEALLGVYTNATQFVKFLETSLAV VCAP_HSVSA 47 47
FEAIFGTFCNRLEWVYFLTSGLAA VCAP_HCMVA 49 49
FEALLGIYCNKIEWINFFTTPIAV VCAP_HSV6U 49 49
HSVCAPSIDMCP2 Length of motif = 18 Motif number = 2
VCAP motif II - 1
PCODE ST INT
PVTYGEMVLNGANLVTAL VCAP_HSV11 302 225
PVTYGEMMITGTNLVTAL VCAP_HSVEB 301 226
PVTYGEMVIANTNLVTAL VCAP_PRVIS 289 223
PVTYGEMVLQGTNLVTAL VCAP_VZVD 313 224
PSSYASFVVRGENLVTAV VCAP_EBV 304 229
PAAYANYVVRGENLVTAI VCAP_HSVSA 297 226
PATYGNFVLSPENAVTAI VCAP_HCMVA 298 225
PISYGHFIMGKENAVTAI VCAP_HSV6U 298 225
HSVCAPSIDMCP3 Length of motif = 20 Motif number = 3
VCAP motif III - 1
PCODE ST INT
YPLVGAMDLTFVLPLGLFNP VCAP_HSV11 391 71
YPLVGNLDLTFIIPLGIFKP VCAP_HSVEB 390 71
YPLVGNLDVTFVMPLGVFKP VCAP_PRVIS 369 62
YPLIGNIDITFIMPMGVFQA VCAP_VZVD 408 77
YPLNRRMQYSYYFPVGLFMP VCAP_EBV 394 72
YPLNRRMHYTYYFPVGLHLP VCAP_HSVSA 385 70
DPLERNVDLTFFFPVGLYLP VCAP_HCMVA 382 66
DPLEQSLQLTFFFPLGIYIP VCAP_HSV6U 382 66
HSVCAPSIDMCP4 Length of motif = 20 Motif number = 4
VCAP motif IV - 1
PCODE ST INT
RVVNGNLPLALCPAAFRDAR VCAP_HSV11 575 164
RLINGNIPLPLCPVEFRDSR VCAP_HSVEB 574 164
RIINGNIPLALCPVDFRDAR VCAP_PRVIS 550 161
RIINGNIPVPLCPISFRDCR VCAP_VZVD 591 163
RLMVGNLPTPLAPAAFQEAR VCAP_EBV 564 150
RNLSGNLPPPLAPYSFQECR VCAP_HSVSA 554 149
RIVIGNLPDGLAPGPFHELR VCAP_HCMVA 554 152
RIMIGNIPLPLAPVSFHEAR VCAP_HSV6U 554 152
HSVCAPSIDMCP5 Length of motif = 19 Motif number = 5
VCAP motif V - 1
PCODE ST INT
YPAVFYLLQAAIHGSEHVF VCAP_HSV11 622 27
YPMVFYILEAVIHGSERTF VCAP_HSVEB 621 27
YPMVFYIIEAVIHGSERTF VCAP_PRVIS 597 27
YPTIFYMLEAVIHGNERNF VCAP_VZVD 638 27
YPAFFYVVEAMIHGFEEKF VCAP_EBV 614 30
YPLLCYIVESMIHGQEEKF VCAP_HSVSA 604 30
YPELCYLVDVLVHGNVDAF VCAP_HCMVA 605 31
YPELAYVIETLVHGNKHAF VCAP_HSV6U 604 30
HSVCAPSIDMCP6 Length of motif = 20 Motif number = 6
VCAP motif VI - 1
PCODE ST INT
IYYYVMVPAFSRGRCCTAGV VCAP_HSV11 810 169
IYYYAVVPAFSRGNCCTMGV VCAP_HSVEB 811 171
IYYYAVVPAFSRGNCCTMGV VCAP_PRVIS 784 168
IYYYIVIPAFSRGSCCTMGV VCAP_VZVD 830 173
IFYYVFLPTCTNAHMCGLGV VCAP_EBV 810 177
IFYYVLLPVCTNGHVCGMGV VCAP_HSVSA 800 177
VFYLCLMPAMTNNRACGLGL VCAP_HCMVA 782 158
IFYFCVLPALSNNKACGAGV VCAP_HSV6U 779 156
HSVCAPSIDMCP7 Length of motif = 21 Motif number = 7
VCAP motif VII - 1
PCODE ST INT
HPGFGFTVVRQDRFVTENVLF VCAP_HSV11 1044 214
HPGFAFTVVRQDRFLTENILF VCAP_HSVEB 1044 213
HPGFALTVVRQDRFATENVLF VCAP_PRVIS 1013 209
HPGIAFTVVRQDRFATEQLLY VCAP_VZVD 1063 213
HPGVAMTVVRTDEILSENILF VCAP_EBV 1038 208
HPGFALTAVRTDEVVAEHIMY VCAP_HSVSA 1028 208
HPGFALTAVRTDTFEVDMLLY VCAP_HCMVA 1028 226
HPGFAATLVRTDNFDVECLLY VCAP_HSV6U 1005 206
HSVCAPSIDMCP8 Length of motif = 21 Motif number = 8
VCAP motif VIII - 1
PCODE ST INT
HGQDAVCEFIATPVSTDVNYF VCAP_HSV11 1178 113
HGQAAVCEFIVTPVSADLNYF VCAP_HSVEB 1178 113
RGQQSVCEFIATPVSVDLAYF VCAP_PRVIS 1144 110
RGQASVCEFVAMPVSTDLQYF VCAP_VZVD 1197 113
HGQQATCEIIVTPVTADVAYF VCAP_EBV 1175 116
HGQLATCEVIMTPVTADITYF VCAP_HSVSA 1165 116
HGQKAACELILTPVTMDVNYF VCAP_HCMVA 1165 116
HGQQAICEVILTPVTTNINFF VCAP_HSV6U 1142 116
HSVCAPSIDMCP9 Length of motif = 19 Motif number = 9
VCAP motif IX - 1
PCODE ST INT
ATANPWASQRFSYGDLLYN VCAP_HSV11 1239 40
ATVNPWASQRNSYGDRLYN VCAP_HSVEB 1239 40
ATANPWASQRHSYADRLYN VCAP_PRVIS 1199 34
ATLNPWASQKHSYGDRLYN VCAP_VZVD 1258 40
STVNPWASQLGSLGDIMYN VCAP_EBV 1237 41
STINPWASQIGSLGDVFFN VCAP_HSVSA 1227 41
ATHNPWASQAGCLSDVLYN VCAP_HCMVA 1226 40
ATTNPWASLPGSLGDILYN VCAP_HSV6U 1203 40
FINAL MOTIF SETS
HSVCAPSIDMCP1 Length of motif = 24 Motif number = 1
VCAP motif I - 2
PCODE ST INT
FDVLLGTYCNTLTLVRFLELGLSV VCAP_HSVEB 52 52
FDVLLGTYCNTLTLVRFLELGLSV O39283 52 52
FDALLGTYCNTLTLVRFLELGLSV Q65565 53 53
FEALLGVYTNVVEFVKFLETALAA O40925 50 50
FEALLGVYTNVVEFVKFLETALAA P88917 50 50
FEALLGVYTNVVEFVKFLETALAA Q98139 50 50
FDALLGTYCSTLSLVRFLELGLSV Q04534 43 43
FDALLGTYCSTLSLVRFLELGLSV VCAP_PRVIS 43 43
FDALLGSYCNTLSLVRFLELGLSV P89442 54 54
FDALLGSYCNTLSLVRFLELGLSV VCAP_HSV11 54 54
FEVLLGVYSNVIQYIKFLETSLAV Q66628 51 51
FEVLLGVYANVIEFVKFLETGLAA O36375 51 51
FEVLLGVYTNAIQYVRFLETALAV VCAP_EBV 52 52
FEALLGVYTNATQFVKFLETSLAV VCAP_HSVSA 48 48
FEALLGVYTNAIEFVKFLETSLAI O41943 50 50
FDILLGTYCNTLNFVRFLELGLSV VCAP_VZVD 66 66
FDILLGTYCNTLSLIRFLETGLSV Q88528 84 84
FEALLGIYCNKIEWINFFTTPIAV VCAP_HSV6U 50 50
FEALLGIYCNRTEWIDFFHTSIAV VCAP_HSV7J 50 50
FEALLGIYCNRTEWIEFCHTSIAV Q69071 50 50
FEALLGIYCNKIEWINFFTTPIAV Q69063 50 50
FEAIFGTFCNRLEWVYFLTSGLAA VCAP_HCMVA 50 50
HSVCAPSIDMCP2 Length of motif = 18 Motif number = 2
VCAP motif II - 2
PCODE ST INT
PVTYGEMMITGTNLVTAL VCAP_HSVEB 302 226
PVTYGEMMISGTNLVTAL O39283 302 226
PVTYGEFVISGLNLVTAL Q65565 303 226
PAAYASYVVRGANLVTAV O40925 300 226
PAAYASYVVRGANLVTAV P88917 300 226
PAAYASYVVRGANLVTAV Q98139 300 226
PVTYGEMVIANTNLVTAL Q04534 290 223
PVTYGEMVIANTNLVTAL VCAP_PRVIS 290 223
PVTYGEMVLNGANLVTAL P89442 303 225
PVTYGEMVLNGANLVTAL VCAP_HSV11 303 225
PASYASYVVRGDNLVTAV Q66628 301 226
PAAYASYVVRGENLVTAV O36375 301 226
PSSYASFVVRGENLVTAV VCAP_EBV 305 229
PAAYANYVVRGENLVTAI VCAP_HSVSA 298 226
PAAYANYVIRGGNVVTAM O41943 300 226
PVTYGEMVLQGTNLVTAL VCAP_VZVD 314 224
PVTYGEMIISGTNLVTVV Q88528 333 225
PISYGHFIMGKENAVTAI VCAP_HSV6U 299 225
PVSYGTFVMGKENAVTAI VCAP_HSV7J 299 225
PVSYGTFVMGKENAVTAI Q69071 298 224
PISYGHFIMGKENAVTAI Q69063 299 225
PATYGNFVLSPENAVTAI VCAP_HCMVA 299 225
HSVCAPSIDMCP3 Length of motif = 20 Motif number = 3
VCAP motif III - 2
PCODE ST INT
YPLVGNLDLTFIIPLGIFKP VCAP_HSVEB 391 71
YPLVGNLDLTFIMPLGIFKP O39283 391 71
YPLVGNMDLTFVMPLGLYKP Q65565 390 69
CPLNRRIQYTYFFPVGLHLP O40925 390 72
CPLNRRIQYTYFFPVGLHLP P88917 390 72
CPLNRRIQYTYFFPVGLHLP Q98139 390 72
YPLVGNLDVTFVMPLGVFKP Q04534 370 62
YPLVGNLDVTFVMPLGVFKP VCAP_PRVIS 370 62
YPLVGAMDLTFVLPLGLFNP P89442 392 71
YPLVGAMDLTFVLPLGLFNP VCAP_HSV11 392 71
FPLNRRLQYSYYFPVGLHMP Q66628 394 75
FPLNRRMQYTYFFPLGLFIP O36375 391 72
YPLNRRMQYSYYFPVGLFMP VCAP_EBV 395 72
YPLNRRMHYTYYFPVGLHLP VCAP_HSVSA 386 70
YPLIRTMQYAYYFPVGLYLP O41943 391 73
YPLIGNIDITFIMPMGVFQA VCAP_VZVD 409 77
YPLIGYVDLTFIIPLGIYQR Q88528 423 72
DPLEQSLQLTFFFPLGIYIP VCAP_HSV6U 383 66
DPLEQKLELTFFFPMGLYIS VCAP_HSV7J 383 66
DPLEQKLELTFFFPMGLYIS Q69071 382 66
DPLEQSLQLTFFFPLGIYIP Q69063 383 66
DPLERNVDLTFFFPVGLYLP VCAP_HCMVA 383 66
HSVCAPSIDMCP4 Length of motif = 20 Motif number = 4
VCAP motif IV - 2
PCODE ST INT
RLINGNIPLPLCPVEFRDSR VCAP_HSVEB 575 164
RLINGNIPLPLCPVEFRDSR O39283 575 164
RIINGNIPVPLCPVDFRDGR Q65565 577 167
RTMVGNIPQPLAPREFQESR O40925 559 149
RTMVGNIPQPLAPREFQESR P88917 559 149
RTMVGNIPQPLAPREFQESR Q98139 559 149
RIINGNIPLALCPVDFRDAR Q04534 551 161
RIINGNIPLALCPVDFRDAR VCAP_PRVIS 551 161
RVVNGNLPLALCPVAFRDAR P89442 576 164
RVVNGNLPLALCPAAFRDAR VCAP_HSV11 576 164
RGMVGNIPQSLAPAGFQECR Q66628 565 151
RTFSGNIPQPLAPNQFQDSR O36375 561 150
RLMVGNLPTPLAPAAFQEAR VCAP_EBV 565 150
RNLSGNLPPPLAPYSFQECR VCAP_HSVSA 555 149
RTHVGNIPEAFAPPKFQEGR O41943 559 148
RIINGNIPVPLCPISFRDCR VCAP_VZVD 592 163
RVCNGNIPLPLCNTDFRDAL Q88528 608 165
RIMIGNIPLPLAPVSFHEAR VCAP_HSV6U 555 152
RILLGNIPLPLAPSSFHEAR VCAP_HSV7J 555 152
RILLGNIPLPLAPSSFHEAR Q69071 554 152
RIMIGNMPLPLAPISFHEAR Q69063 555 152
RIVIGNLPDGLAPGPFHELR VCAP_HCMVA 555 152
HSVCAPSIDMCP5 Length of motif = 19 Motif number = 5
VCAP motif V - 2
PCODE ST INT
YPMVFYILEAVIHGSERTF VCAP_HSVEB 622 27
YPMVFYILEAVIHGSERTF O39283 622 27
YPMAFYIIEAVIHGSERTF Q65565 624 27
YPLFCYVIEAMIHGQEEKF O40925 609 30
YPLFCYVIEAMIHGQEEKF P88917 609 30
YPLFCYVIEAMIHGQEEKF Q98139 609 30
YPMVFYIIEAVIHGSERTF Q04534 598 27
YPMVFYIIEAVIHGSERTF VCAP_PRVIS 598 27
YPAVFYLLQAAIHGNEHVF P89442 623 27
YPAVFYLLQAAIHGSEHVF VCAP_HSV11 623 27
YPVICYLIEAMVHGQEEKF Q66628 615 30
YPFICYIVEAMIHGQPEKF O36375 611 30
YPAFFYVVEAMIHGFEEKF VCAP_EBV 615 30
YPLLCYIVESMIHGQEEKF VCAP_HSVSA 605 30
YPPMCYVIEAMIHGQEDKF O41943 609 30
YPTIFYMLEAVIHGNERNF VCAP_VZVD 639 27
YPTAFYIIEAVIHGSERNF Q88528 655 27
YPELAYVIETLVHGNKHAF VCAP_HSV6U 605 30
YPELAYIIELLIHGNKTAF VCAP_HSV7J 605 30
YPELAYIIELLIHGNKTAF Q69071 604 30
YPELAYVIEILVHGNKHAF Q69063 605 30
YPELCYLVDVLVHGNVDAF VCAP_HCMVA 606 31
HSVCAPSIDMCP6 Length of motif = 20 Motif number = 6
VCAP motif VI - 2
PCODE ST INT
IYYYAVVPAFSRGNCCTMGV VCAP_HSVEB 812 171
IYYYAVVPAFSRGNCCTMGI O39283 812 171
IFYYAVVPAFARGACCSMGV Q65565 814 171
LFYYVLMPVCSNGHMCGMGV O40925 805 177
LFYYVLMPVCSNGHMCGMGV P88917 805 177
LFYYVLMPVCSNGHMCGMGV Q98139 805 177
IYYYAVVPAFSRGNCCTMGV Q04534 785 168
IYYYAVVPAFSRGNCCTMGV VCAP_PRVIS 785 168
IYYYVLVPAFSRGRCCTAGV P89442 811 169
IYYYVMVPAFSRGRCCTAGV VCAP_HSV11 811 169
IFYYVFLPVCTNGHVCGMGV Q66628 811 177
IYYYVMLPVCTNGHMCGMGA O36375 801 171
IFYYVFLPTCTNAHMCGLGV VCAP_EBV 811 177
IFYYVLLPVCTNGHVCGMGV VCAP_HSVSA 801 177
LFYYVFLPVCTNGHVCGMGV O41943 803 175
IYYYIVIPAFSRGSCCTMGV VCAP_VZVD 831 173
IYYYVVVPAFSRGQCCTMGI Q88528 846 172
IFYFCVLPALSNNKACGAGV VCAP_HSV6U 780 156
IFYFCFLPALTNNKMCGAGF VCAP_HSV7J 780 156
IFYFCFLPALTNNKMCGAGF Q69071 779 156
IFYFCVLPALSNNKACGAGV Q69063 780 156
VFYLCLMPAMTNNRACGLGL VCAP_HCMVA 783 158
HSVCAPSIDMCP7 Length of motif = 21 Motif number = 7
VCAP motif VII - 2
PCODE ST INT
HPGFAFTVVRQDRFLTENILF VCAP_HSVEB 1045 213
HPGIAFTVVRQDRFLTENILF O39283 1045 213
HPGFGLTVVRQDRFATENMLF Q65565 1047 213
HPGFAMTVVRTDEVLAEHILY O40925 1033 208
HPGFAMTVVRTDEVLAEHILY P88917 1033 208
HPGFAMTVVRTDEVLAEHILY Q98139 1033 208
HPGFALTVVRQDRFATENVLF Q04534 1014 209
HPGFALTVVRQDRFATENVLF VCAP_PRVIS 1014 209
HPGFGFTVVRQDRFVTENVLF P89442 1045 214
HPGFGFTVVRQDRFVTENVLF VCAP_HSV11 1045 214
HPGFALTVVRTDEVLSENILY Q66628 1039 208
HPGFALTVLRTDEVLAENVMF O36375 1029 208
HPGVAMTVVRTDEILSENILF VCAP_EBV 1039 208
HPGFALTAVRTDEVVAEHIMY VCAP_HSVSA 1029 208
HPGVALTVVRTDELLTENILY O41943 1031 208
HPGIAFTVVRQDRFATEQLLY VCAP_VZVD 1064 213
HPGIAFTVIRQDRFLADMGLF Q88528 1081 215
HPGFAATLVRTDNFDVECLLY VCAP_HSV6U 1006 206
HPGFAATLVRTDCFDINCLLY VCAP_HSV7J 1006 206
HPGFAATLVRTDCFDINCLLY Q69071 1005 206
HPGFAATLVRTDNFDVECLLY Q69063 1006 206
HPGFALTAVRTDTFEVDMLLY VCAP_HCMVA 1029 226
HSVCAPSIDMCP8 Length of motif = 21 Motif number = 8
VCAP motif VIII - 2
PCODE ST INT
HGQAAVCEFIVTPVSADLNYF VCAP_HSVEB 1179 113
HGQAAVCEFIVTPVSADLNYF O39283 1178 112
RGQAAVCEFIATPVSADLAYF Q65565 1180 112
HGQLATCEIIPTPVTSDVAYF O40925 1171 117
HGQLATCEIIPTPVTSDVAYF P88917 1171 117
HGQLATCEIIPTPVTSDVAYF Q98139 1171 117
RGQQSVCEFIATPVSVDLAYF Q04534 1145 110
RGQQSVCEFIATPVSVDLAYF VCAP_PRVIS 1145 110
HGQDAVCEFIATPVATDINYF P89442 1179 113
HGQDAVCEFIATPVSTDVNYF VCAP_HSV11 1179 113
HGQLATCEVILTPVTADVSYF Q66628 1176 116
HGQYATCEVIPTPVTADVAYF O36375 1165 115
HGQQATCEIIVTPVTADVAYF VCAP_EBV 1176 116
HGQLATCEVIMTPVTADITYF VCAP_HSVSA 1166 116
HGQLATCEVILTPVTSDLTYF O41943 1169 117
RGQASVCEFVAMPVSTDLQYF VCAP_VZVD 1198 113
HGQMSICEFIPTPVSSDLEYF Q88528 1215 113
HGQQAICEVILTPVTTNINFF VCAP_HSV6U 1143 116
HGQQAICEVVITPVTSDINFY VCAP_HSV7J 1143 116
HGQQAICEVVITPVTSDINFY Q69071 1142 116
HGQQAICEVVLTPVTTNINFF Q69063 1143 116
HGQKAACELILTPVTMDVNYF VCAP_HCMVA 1166 116
HSVCAPSIDMCP9 Length of motif = 19 Motif number = 9
VCAP motif IX - 2
PCODE ST INT
ATVNPWASQRNSYGDRLYN VCAP_HSVEB 1240 40
ATVNPWASQRNSYGDRLYN O39283 1239 40
ATVNPWASQRHSYGDRLYN Q65565 1241 40
STNNPWASQRGSLGDVLYN O40925 1233 41
STNNPWASQRGSLGDVLYN P88917 1233 41
STNNPWASQRGSLGDVLYN Q98139 1233 41
ATANPWASQRHSYADRLYN Q04534 1200 34
ATANPWASQRHSYADRLYN VCAP_PRVIS 1200 34
ATANPWASQRFSYGDLLYN P89442 1240 40
ATANPWASQRFSYGDLLYN VCAP_HSV11 1240 40
ATVNPWASQLGSLGDVMYN Q66628 1238 41
STVNPWASQKGSLGDVLYG O36375 1227 41
STVNPWASQLGSLGDIMYN VCAP_EBV 1238 41
STINPWASQIGSLGDVFFN VCAP_HSVSA 1228 41
TTNNPWASQIGSLGDALYN O41943 1231 41
ATLNPWASQKHSYGDRLYN VCAP_VZVD 1259 40
ATNNPWASQRYSYADRLYN Q88528 1276 40
ATTNPWASLPGSLGDILYN VCAP_HSV6U 1204 40
ATTNPWASQEGSLSDVLYN VCAP_HSV7J 1204 40
ATTNPWASQEGSLSDVLYN Q69071 1203 40
ATTNPWASLPGSLGDILYN Q69063 1204 40
ATHNPWASQAGCLSDVLYN VCAP_HCMVA 1227 40
User query: Display/Full Code "HSVCAPSIDMCP"