WORKLIST ENTRIES (1):

HSVCAPSIDMCP View alignment     Herpesvirus major capsid protein (MCP) signature
 Type of fingerprint: COMPOUND with 9  elements
Links:
   PRINTS; PR00233 ICOSAHEDRAL; PR00236 HSVCAPSIDP40; PR00865 HPVCAPSIDL1
   INTERPRO; IPR000912

 Creation date 21-SEP-1993; UPDATE 07-JUN-1999

   1. TELFORD, E.A.R., WATSON, M.S., MCBRIDE, K. AND DAVISON, A.
   The DNA sequence of equine Herpesvirus.
   J.VIROL. 189(1) 304-316 (1992).

   2. YAMADA, S., IMADA, T., WATANABE, W., HONDA, Y., NAKAJIMA-IIJIMA, S.,
   SHIMIZU, Y. AND SEKIKAWA, K.
   Nucleotide sequence and transcriptional mapping of the major capsid
   protein gene of Pseudorabies virus.
   VIROLOGY 185(1) 56-66 (1991).

   3. ALBRECHT, J.-C., NICHOLAS, J., BILLER, D., CAMERON, K.R., BIESINGER, B.,
   NEWMAN, C., WITTMANN, S., CRAXTON, M.A., COLEMAN, H., FLECKENSTEIN, B.
   AND HONESS, R.W.
   Primary structure of the Herpesvirus Saimiri genome.
   J.VIROL. 66(8) 5047-5058 (1992).

   The Herpesvirus major capsid protein (MCP) is the principal protein of the
   icosahedral capsid, forming the main component of the hexavalent and
   probably the pentavalent capsomeres. It shares similarity with all other
   Herpesvirus major capsid proteins.
  
   HSVCAPSIDMCP is a 9-element fingerprint that provides a signature for the
   Herpesvirus major capsid proteins. The fingerprint was derived from an
   initial alignment of 8 sequences: the motifs were drawn from conserved
   regions spanning the full alignment length. A single iteration on OWL21.1
   was required to reach convergence, no further sequences being identified
   beyond the starting set.
  
   An update on SPTR37_9f identified a true set of 22 sequences.

  SUMMARY INFORMATION
     22 codes involving  9 elements
      0 codes involving  8 elements
      0 codes involving  7 elements
      0 codes involving  6 elements
      0 codes involving  5 elements
      0 codes involving  4 elements
      0 codes involving  3 elements
      0 codes involving  2 elements

   COMPOSITE FINGERPRINT INDEX
  
    9|  22   22   22   22   22   22   22   22   22  
    8|   0    0    0    0    0    0    0    0    0  
    7|   0    0    0    0    0    0    0    0    0  
    6|   0    0    0    0    0    0    0    0    0  
    5|   0    0    0    0    0    0    0    0    0  
    4|   0    0    0    0    0    0    0    0    0  
    3|   0    0    0    0    0    0    0    0    0  
    2|   0    0    0    0    0    0    0    0    0  
   --+----------------------------------------------
     |   1    2    3    4    5    6    7    8    9  

True positives..
 VCAP_HSVEB     O39283         Q65565         Q98139         
 P88917         O40925         Q04534         VCAP_PRVIS     
 VCAP_HSV11     P89442         Q66628         O36375         
 VCAP_EBV       VCAP_HSVSA     O41943         VCAP_VZVD      
 Q88528         VCAP_HSV6U     VCAP_HSV7J     Q69071         
 Q69063         VCAP_HCMVA     


  PROTEIN TITLES
   VCAP_HSVEB       MAJOR CAPSID PROTEIN (MCP) (CAPSID PROTEIN VP5) - EQUINE HER
   O39283           COUNTERPART OF HSV-1 GENE UL19 AND VZV GENE 40 - EQUINE HERP
   Q65565           MAJOR CAPSID PROTEIN - BOVINE HERPESVIRUS 1.
   Q98139           MAJOR CAPSID PROTEIN - KAPOSI'S SARCOMA-ASSOCIATED HERPESVIR
   P88917           ORF 25 - KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS (KSHV) (HUM
   O40925           ORF 25 - KAPOSI'S SARCOMA-ASSOCIATED HERPESVIRUS (KSHV) (HUM
   Q04534           MAJOR CAPSID PROTEIN (MCP) - PSEUDORABIES VIRUS.
   VCAP_PRVIS       MAJOR CAPSID PROTEIN (MCP) (MCP142) - PSEUDORABIES VIRUS (ST
   VCAP_HSV11       MAJOR CAPSID PROTEIN (MCP) (CAPSID PROTEIN VP5) - HERPES SIM
   P89442           MAJOR CAPSID PROTEIN - HERPES SIMPLEX VIRUS (TYPE 2).
   Q66628           CAPSID PROTEIN - EQUINE HERPESVIRUS 2.
   O36375           MAJOR CAPSID PROTEIN - ALCELAPHINE HERPESVIRUS 1 (WILDEBEEST
   VCAP_EBV         MAJOR CAPSID PROTEIN (MCP) - EPSTEIN-BARR VIRUS (STRAIN B95-
   VCAP_HSVSA       MAJOR CAPSID PROTEIN (MCP) - HERPESVIRUS SAIMIRI (STRAIN 11)
   O41943           MAJOR CAPSID PROTEIN - MURINE HERPESVIRUS 68.
   VCAP_VZVD        MAJOR CAPSID PROTEIN (MCP) - VARICELLA-ZOSTER VIRUS (STRAIN 
   Q88528           MAJOR CAPSID PROTEIN - TURKEY HERPESVIRUS.
   VCAP_HSV6U       MAJOR CAPSID PROTEIN (MCP) - HERPES SIMPLEX VIRUS (TYPE 6 / 
   VCAP_HSV7J       MAJOR CAPSID PROTEIN (MCP) - HERPES SIMPLEX VIRUS (TYPE 7 / 
   Q69071           MAJOR CAPSID PROTEIN - HUMAN HERPESVIRUS 7.
   Q69063           MAJOR CAPSID PROTEIN - HUMAN HERPESVIRUS 6.
   VCAP_HCMVA       MAJOR CAPSID PROTEIN (MCP) - HUMAN CYTOMEGALOVIRUS (STRAIN A

SCAN HISTORY OWL21_1 1 100 NSINGLE OWL25_2 1 100 NSINGLE SPTR37_9f 2 23 NSINGLE INITIAL MOTIF SETS HSVCAPSIDMCP1 Length of motif = 24 Motif number = 1 VCAP motif I - 1 PCODE ST INT FDALLGSYCNTLSLVRFLELGLSV VCAP_HSV11 53 53 FDVLLGTYCNTLTLVRFLELGLSV VCAP_HSVEB 51 51 FDALLGTYCSTLSLVRFLELGLSV VCAP_PRVIS 42 42 FDILLGTYCNTLNFVRFLELGLSV VCAP_VZVD 65 65 FEVLLGVYTNAIQYVRFLETALAV VCAP_EBV 51 51 FEALLGVYTNATQFVKFLETSLAV VCAP_HSVSA 47 47 FEAIFGTFCNRLEWVYFLTSGLAA VCAP_HCMVA 49 49 FEALLGIYCNKIEWINFFTTPIAV VCAP_HSV6U 49 49 HSVCAPSIDMCP2 Length of motif = 18 Motif number = 2 VCAP motif II - 1 PCODE ST INT PVTYGEMVLNGANLVTAL VCAP_HSV11 302 225 PVTYGEMMITGTNLVTAL VCAP_HSVEB 301 226 PVTYGEMVIANTNLVTAL VCAP_PRVIS 289 223 PVTYGEMVLQGTNLVTAL VCAP_VZVD 313 224 PSSYASFVVRGENLVTAV VCAP_EBV 304 229 PAAYANYVVRGENLVTAI VCAP_HSVSA 297 226 PATYGNFVLSPENAVTAI VCAP_HCMVA 298 225 PISYGHFIMGKENAVTAI VCAP_HSV6U 298 225 HSVCAPSIDMCP3 Length of motif = 20 Motif number = 3 VCAP motif III - 1 PCODE ST INT YPLVGAMDLTFVLPLGLFNP VCAP_HSV11 391 71 YPLVGNLDLTFIIPLGIFKP VCAP_HSVEB 390 71 YPLVGNLDVTFVMPLGVFKP VCAP_PRVIS 369 62 YPLIGNIDITFIMPMGVFQA VCAP_VZVD 408 77 YPLNRRMQYSYYFPVGLFMP VCAP_EBV 394 72 YPLNRRMHYTYYFPVGLHLP VCAP_HSVSA 385 70 DPLERNVDLTFFFPVGLYLP VCAP_HCMVA 382 66 DPLEQSLQLTFFFPLGIYIP VCAP_HSV6U 382 66 HSVCAPSIDMCP4 Length of motif = 20 Motif number = 4 VCAP motif IV - 1 PCODE ST INT RVVNGNLPLALCPAAFRDAR VCAP_HSV11 575 164 RLINGNIPLPLCPVEFRDSR VCAP_HSVEB 574 164 RIINGNIPLALCPVDFRDAR VCAP_PRVIS 550 161 RIINGNIPVPLCPISFRDCR VCAP_VZVD 591 163 RLMVGNLPTPLAPAAFQEAR VCAP_EBV 564 150 RNLSGNLPPPLAPYSFQECR VCAP_HSVSA 554 149 RIVIGNLPDGLAPGPFHELR VCAP_HCMVA 554 152 RIMIGNIPLPLAPVSFHEAR VCAP_HSV6U 554 152 HSVCAPSIDMCP5 Length of motif = 19 Motif number = 5 VCAP motif V - 1 PCODE ST INT YPAVFYLLQAAIHGSEHVF VCAP_HSV11 622 27 YPMVFYILEAVIHGSERTF VCAP_HSVEB 621 27 YPMVFYIIEAVIHGSERTF VCAP_PRVIS 597 27 YPTIFYMLEAVIHGNERNF VCAP_VZVD 638 27 YPAFFYVVEAMIHGFEEKF VCAP_EBV 614 30 YPLLCYIVESMIHGQEEKF VCAP_HSVSA 604 30 YPELCYLVDVLVHGNVDAF VCAP_HCMVA 605 31 YPELAYVIETLVHGNKHAF VCAP_HSV6U 604 30 HSVCAPSIDMCP6 Length of motif = 20 Motif number = 6 VCAP motif VI - 1 PCODE ST INT IYYYVMVPAFSRGRCCTAGV VCAP_HSV11 810 169 IYYYAVVPAFSRGNCCTMGV VCAP_HSVEB 811 171 IYYYAVVPAFSRGNCCTMGV VCAP_PRVIS 784 168 IYYYIVIPAFSRGSCCTMGV VCAP_VZVD 830 173 IFYYVFLPTCTNAHMCGLGV VCAP_EBV 810 177 IFYYVLLPVCTNGHVCGMGV VCAP_HSVSA 800 177 VFYLCLMPAMTNNRACGLGL VCAP_HCMVA 782 158 IFYFCVLPALSNNKACGAGV VCAP_HSV6U 779 156 HSVCAPSIDMCP7 Length of motif = 21 Motif number = 7 VCAP motif VII - 1 PCODE ST INT HPGFGFTVVRQDRFVTENVLF VCAP_HSV11 1044 214 HPGFAFTVVRQDRFLTENILF VCAP_HSVEB 1044 213 HPGFALTVVRQDRFATENVLF VCAP_PRVIS 1013 209 HPGIAFTVVRQDRFATEQLLY VCAP_VZVD 1063 213 HPGVAMTVVRTDEILSENILF VCAP_EBV 1038 208 HPGFALTAVRTDEVVAEHIMY VCAP_HSVSA 1028 208 HPGFALTAVRTDTFEVDMLLY VCAP_HCMVA 1028 226 HPGFAATLVRTDNFDVECLLY VCAP_HSV6U 1005 206 HSVCAPSIDMCP8 Length of motif = 21 Motif number = 8 VCAP motif VIII - 1 PCODE ST INT HGQDAVCEFIATPVSTDVNYF VCAP_HSV11 1178 113 HGQAAVCEFIVTPVSADLNYF VCAP_HSVEB 1178 113 RGQQSVCEFIATPVSVDLAYF VCAP_PRVIS 1144 110 RGQASVCEFVAMPVSTDLQYF VCAP_VZVD 1197 113 HGQQATCEIIVTPVTADVAYF VCAP_EBV 1175 116 HGQLATCEVIMTPVTADITYF VCAP_HSVSA 1165 116 HGQKAACELILTPVTMDVNYF VCAP_HCMVA 1165 116 HGQQAICEVILTPVTTNINFF VCAP_HSV6U 1142 116 HSVCAPSIDMCP9 Length of motif = 19 Motif number = 9 VCAP motif IX - 1 PCODE ST INT ATANPWASQRFSYGDLLYN VCAP_HSV11 1239 40 ATVNPWASQRNSYGDRLYN VCAP_HSVEB 1239 40 ATANPWASQRHSYADRLYN VCAP_PRVIS 1199 34 ATLNPWASQKHSYGDRLYN VCAP_VZVD 1258 40 STVNPWASQLGSLGDIMYN VCAP_EBV 1237 41 STINPWASQIGSLGDVFFN VCAP_HSVSA 1227 41 ATHNPWASQAGCLSDVLYN VCAP_HCMVA 1226 40 ATTNPWASLPGSLGDILYN VCAP_HSV6U 1203 40 FINAL MOTIF SETS HSVCAPSIDMCP1 Length of motif = 24 Motif number = 1 VCAP motif I - 2 PCODE ST INT FDVLLGTYCNTLTLVRFLELGLSV VCAP_HSVEB 52 52 FDVLLGTYCNTLTLVRFLELGLSV O39283 52 52 FDALLGTYCNTLTLVRFLELGLSV Q65565 53 53 FEALLGVYTNVVEFVKFLETALAA O40925 50 50 FEALLGVYTNVVEFVKFLETALAA P88917 50 50 FEALLGVYTNVVEFVKFLETALAA Q98139 50 50 FDALLGTYCSTLSLVRFLELGLSV Q04534 43 43 FDALLGTYCSTLSLVRFLELGLSV VCAP_PRVIS 43 43 FDALLGSYCNTLSLVRFLELGLSV P89442 54 54 FDALLGSYCNTLSLVRFLELGLSV VCAP_HSV11 54 54 FEVLLGVYSNVIQYIKFLETSLAV Q66628 51 51 FEVLLGVYANVIEFVKFLETGLAA O36375 51 51 FEVLLGVYTNAIQYVRFLETALAV VCAP_EBV 52 52 FEALLGVYTNATQFVKFLETSLAV VCAP_HSVSA 48 48 FEALLGVYTNAIEFVKFLETSLAI O41943 50 50 FDILLGTYCNTLNFVRFLELGLSV VCAP_VZVD 66 66 FDILLGTYCNTLSLIRFLETGLSV Q88528 84 84 FEALLGIYCNKIEWINFFTTPIAV VCAP_HSV6U 50 50 FEALLGIYCNRTEWIDFFHTSIAV VCAP_HSV7J 50 50 FEALLGIYCNRTEWIEFCHTSIAV Q69071 50 50 FEALLGIYCNKIEWINFFTTPIAV Q69063 50 50 FEAIFGTFCNRLEWVYFLTSGLAA VCAP_HCMVA 50 50 HSVCAPSIDMCP2 Length of motif = 18 Motif number = 2 VCAP motif II - 2 PCODE ST INT PVTYGEMMITGTNLVTAL VCAP_HSVEB 302 226 PVTYGEMMISGTNLVTAL O39283 302 226 PVTYGEFVISGLNLVTAL Q65565 303 226 PAAYASYVVRGANLVTAV O40925 300 226 PAAYASYVVRGANLVTAV P88917 300 226 PAAYASYVVRGANLVTAV Q98139 300 226 PVTYGEMVIANTNLVTAL Q04534 290 223 PVTYGEMVIANTNLVTAL VCAP_PRVIS 290 223 PVTYGEMVLNGANLVTAL P89442 303 225 PVTYGEMVLNGANLVTAL VCAP_HSV11 303 225 PASYASYVVRGDNLVTAV Q66628 301 226 PAAYASYVVRGENLVTAV O36375 301 226 PSSYASFVVRGENLVTAV VCAP_EBV 305 229 PAAYANYVVRGENLVTAI VCAP_HSVSA 298 226 PAAYANYVIRGGNVVTAM O41943 300 226 PVTYGEMVLQGTNLVTAL VCAP_VZVD 314 224 PVTYGEMIISGTNLVTVV Q88528 333 225 PISYGHFIMGKENAVTAI VCAP_HSV6U 299 225 PVSYGTFVMGKENAVTAI VCAP_HSV7J 299 225 PVSYGTFVMGKENAVTAI Q69071 298 224 PISYGHFIMGKENAVTAI Q69063 299 225 PATYGNFVLSPENAVTAI VCAP_HCMVA 299 225 HSVCAPSIDMCP3 Length of motif = 20 Motif number = 3 VCAP motif III - 2 PCODE ST INT YPLVGNLDLTFIIPLGIFKP VCAP_HSVEB 391 71 YPLVGNLDLTFIMPLGIFKP O39283 391 71 YPLVGNMDLTFVMPLGLYKP Q65565 390 69 CPLNRRIQYTYFFPVGLHLP O40925 390 72 CPLNRRIQYTYFFPVGLHLP P88917 390 72 CPLNRRIQYTYFFPVGLHLP Q98139 390 72 YPLVGNLDVTFVMPLGVFKP Q04534 370 62 YPLVGNLDVTFVMPLGVFKP VCAP_PRVIS 370 62 YPLVGAMDLTFVLPLGLFNP P89442 392 71 YPLVGAMDLTFVLPLGLFNP VCAP_HSV11 392 71 FPLNRRLQYSYYFPVGLHMP Q66628 394 75 FPLNRRMQYTYFFPLGLFIP O36375 391 72 YPLNRRMQYSYYFPVGLFMP VCAP_EBV 395 72 YPLNRRMHYTYYFPVGLHLP VCAP_HSVSA 386 70 YPLIRTMQYAYYFPVGLYLP O41943 391 73 YPLIGNIDITFIMPMGVFQA VCAP_VZVD 409 77 YPLIGYVDLTFIIPLGIYQR Q88528 423 72 DPLEQSLQLTFFFPLGIYIP VCAP_HSV6U 383 66 DPLEQKLELTFFFPMGLYIS VCAP_HSV7J 383 66 DPLEQKLELTFFFPMGLYIS Q69071 382 66 DPLEQSLQLTFFFPLGIYIP Q69063 383 66 DPLERNVDLTFFFPVGLYLP VCAP_HCMVA 383 66 HSVCAPSIDMCP4 Length of motif = 20 Motif number = 4 VCAP motif IV - 2 PCODE ST INT RLINGNIPLPLCPVEFRDSR VCAP_HSVEB 575 164 RLINGNIPLPLCPVEFRDSR O39283 575 164 RIINGNIPVPLCPVDFRDGR Q65565 577 167 RTMVGNIPQPLAPREFQESR O40925 559 149 RTMVGNIPQPLAPREFQESR P88917 559 149 RTMVGNIPQPLAPREFQESR Q98139 559 149 RIINGNIPLALCPVDFRDAR Q04534 551 161 RIINGNIPLALCPVDFRDAR VCAP_PRVIS 551 161 RVVNGNLPLALCPVAFRDAR P89442 576 164 RVVNGNLPLALCPAAFRDAR VCAP_HSV11 576 164 RGMVGNIPQSLAPAGFQECR Q66628 565 151 RTFSGNIPQPLAPNQFQDSR O36375 561 150 RLMVGNLPTPLAPAAFQEAR VCAP_EBV 565 150 RNLSGNLPPPLAPYSFQECR VCAP_HSVSA 555 149 RTHVGNIPEAFAPPKFQEGR O41943 559 148 RIINGNIPVPLCPISFRDCR VCAP_VZVD 592 163 RVCNGNIPLPLCNTDFRDAL Q88528 608 165 RIMIGNIPLPLAPVSFHEAR VCAP_HSV6U 555 152 RILLGNIPLPLAPSSFHEAR VCAP_HSV7J 555 152 RILLGNIPLPLAPSSFHEAR Q69071 554 152 RIMIGNMPLPLAPISFHEAR Q69063 555 152 RIVIGNLPDGLAPGPFHELR VCAP_HCMVA 555 152 HSVCAPSIDMCP5 Length of motif = 19 Motif number = 5 VCAP motif V - 2 PCODE ST INT YPMVFYILEAVIHGSERTF VCAP_HSVEB 622 27 YPMVFYILEAVIHGSERTF O39283 622 27 YPMAFYIIEAVIHGSERTF Q65565 624 27 YPLFCYVIEAMIHGQEEKF O40925 609 30 YPLFCYVIEAMIHGQEEKF P88917 609 30 YPLFCYVIEAMIHGQEEKF Q98139 609 30 YPMVFYIIEAVIHGSERTF Q04534 598 27 YPMVFYIIEAVIHGSERTF VCAP_PRVIS 598 27 YPAVFYLLQAAIHGNEHVF P89442 623 27 YPAVFYLLQAAIHGSEHVF VCAP_HSV11 623 27 YPVICYLIEAMVHGQEEKF Q66628 615 30 YPFICYIVEAMIHGQPEKF O36375 611 30 YPAFFYVVEAMIHGFEEKF VCAP_EBV 615 30 YPLLCYIVESMIHGQEEKF VCAP_HSVSA 605 30 YPPMCYVIEAMIHGQEDKF O41943 609 30 YPTIFYMLEAVIHGNERNF VCAP_VZVD 639 27 YPTAFYIIEAVIHGSERNF Q88528 655 27 YPELAYVIETLVHGNKHAF VCAP_HSV6U 605 30 YPELAYIIELLIHGNKTAF VCAP_HSV7J 605 30 YPELAYIIELLIHGNKTAF Q69071 604 30 YPELAYVIEILVHGNKHAF Q69063 605 30 YPELCYLVDVLVHGNVDAF VCAP_HCMVA 606 31 HSVCAPSIDMCP6 Length of motif = 20 Motif number = 6 VCAP motif VI - 2 PCODE ST INT IYYYAVVPAFSRGNCCTMGV VCAP_HSVEB 812 171 IYYYAVVPAFSRGNCCTMGI O39283 812 171 IFYYAVVPAFARGACCSMGV Q65565 814 171 LFYYVLMPVCSNGHMCGMGV O40925 805 177 LFYYVLMPVCSNGHMCGMGV P88917 805 177 LFYYVLMPVCSNGHMCGMGV Q98139 805 177 IYYYAVVPAFSRGNCCTMGV Q04534 785 168 IYYYAVVPAFSRGNCCTMGV VCAP_PRVIS 785 168 IYYYVLVPAFSRGRCCTAGV P89442 811 169 IYYYVMVPAFSRGRCCTAGV VCAP_HSV11 811 169 IFYYVFLPVCTNGHVCGMGV Q66628 811 177 IYYYVMLPVCTNGHMCGMGA O36375 801 171 IFYYVFLPTCTNAHMCGLGV VCAP_EBV 811 177 IFYYVLLPVCTNGHVCGMGV VCAP_HSVSA 801 177 LFYYVFLPVCTNGHVCGMGV O41943 803 175 IYYYIVIPAFSRGSCCTMGV VCAP_VZVD 831 173 IYYYVVVPAFSRGQCCTMGI Q88528 846 172 IFYFCVLPALSNNKACGAGV VCAP_HSV6U 780 156 IFYFCFLPALTNNKMCGAGF VCAP_HSV7J 780 156 IFYFCFLPALTNNKMCGAGF Q69071 779 156 IFYFCVLPALSNNKACGAGV Q69063 780 156 VFYLCLMPAMTNNRACGLGL VCAP_HCMVA 783 158 HSVCAPSIDMCP7 Length of motif = 21 Motif number = 7 VCAP motif VII - 2 PCODE ST INT HPGFAFTVVRQDRFLTENILF VCAP_HSVEB 1045 213 HPGIAFTVVRQDRFLTENILF O39283 1045 213 HPGFGLTVVRQDRFATENMLF Q65565 1047 213 HPGFAMTVVRTDEVLAEHILY O40925 1033 208 HPGFAMTVVRTDEVLAEHILY P88917 1033 208 HPGFAMTVVRTDEVLAEHILY Q98139 1033 208 HPGFALTVVRQDRFATENVLF Q04534 1014 209 HPGFALTVVRQDRFATENVLF VCAP_PRVIS 1014 209 HPGFGFTVVRQDRFVTENVLF P89442 1045 214 HPGFGFTVVRQDRFVTENVLF VCAP_HSV11 1045 214 HPGFALTVVRTDEVLSENILY Q66628 1039 208 HPGFALTVLRTDEVLAENVMF O36375 1029 208 HPGVAMTVVRTDEILSENILF VCAP_EBV 1039 208 HPGFALTAVRTDEVVAEHIMY VCAP_HSVSA 1029 208 HPGVALTVVRTDELLTENILY O41943 1031 208 HPGIAFTVVRQDRFATEQLLY VCAP_VZVD 1064 213 HPGIAFTVIRQDRFLADMGLF Q88528 1081 215 HPGFAATLVRTDNFDVECLLY VCAP_HSV6U 1006 206 HPGFAATLVRTDCFDINCLLY VCAP_HSV7J 1006 206 HPGFAATLVRTDCFDINCLLY Q69071 1005 206 HPGFAATLVRTDNFDVECLLY Q69063 1006 206 HPGFALTAVRTDTFEVDMLLY VCAP_HCMVA 1029 226 HSVCAPSIDMCP8 Length of motif = 21 Motif number = 8 VCAP motif VIII - 2 PCODE ST INT HGQAAVCEFIVTPVSADLNYF VCAP_HSVEB 1179 113 HGQAAVCEFIVTPVSADLNYF O39283 1178 112 RGQAAVCEFIATPVSADLAYF Q65565 1180 112 HGQLATCEIIPTPVTSDVAYF O40925 1171 117 HGQLATCEIIPTPVTSDVAYF P88917 1171 117 HGQLATCEIIPTPVTSDVAYF Q98139 1171 117 RGQQSVCEFIATPVSVDLAYF Q04534 1145 110 RGQQSVCEFIATPVSVDLAYF VCAP_PRVIS 1145 110 HGQDAVCEFIATPVATDINYF P89442 1179 113 HGQDAVCEFIATPVSTDVNYF VCAP_HSV11 1179 113 HGQLATCEVILTPVTADVSYF Q66628 1176 116 HGQYATCEVIPTPVTADVAYF O36375 1165 115 HGQQATCEIIVTPVTADVAYF VCAP_EBV 1176 116 HGQLATCEVIMTPVTADITYF VCAP_HSVSA 1166 116 HGQLATCEVILTPVTSDLTYF O41943 1169 117 RGQASVCEFVAMPVSTDLQYF VCAP_VZVD 1198 113 HGQMSICEFIPTPVSSDLEYF Q88528 1215 113 HGQQAICEVILTPVTTNINFF VCAP_HSV6U 1143 116 HGQQAICEVVITPVTSDINFY VCAP_HSV7J 1143 116 HGQQAICEVVITPVTSDINFY Q69071 1142 116 HGQQAICEVVLTPVTTNINFF Q69063 1143 116 HGQKAACELILTPVTMDVNYF VCAP_HCMVA 1166 116 HSVCAPSIDMCP9 Length of motif = 19 Motif number = 9 VCAP motif IX - 2 PCODE ST INT ATVNPWASQRNSYGDRLYN VCAP_HSVEB 1240 40 ATVNPWASQRNSYGDRLYN O39283 1239 40 ATVNPWASQRHSYGDRLYN Q65565 1241 40 STNNPWASQRGSLGDVLYN O40925 1233 41 STNNPWASQRGSLGDVLYN P88917 1233 41 STNNPWASQRGSLGDVLYN Q98139 1233 41 ATANPWASQRHSYADRLYN Q04534 1200 34 ATANPWASQRHSYADRLYN VCAP_PRVIS 1200 34 ATANPWASQRFSYGDLLYN P89442 1240 40 ATANPWASQRFSYGDLLYN VCAP_HSV11 1240 40 ATVNPWASQLGSLGDVMYN Q66628 1238 41 STVNPWASQKGSLGDVLYG O36375 1227 41 STVNPWASQLGSLGDIMYN VCAP_EBV 1238 41 STINPWASQIGSLGDVFFN VCAP_HSVSA 1228 41 TTNNPWASQIGSLGDALYN O41943 1231 41 ATLNPWASQKHSYGDRLYN VCAP_VZVD 1259 40 ATNNPWASQRYSYADRLYN Q88528 1276 40 ATTNPWASLPGSLGDILYN VCAP_HSV6U 1204 40 ATTNPWASQEGSLSDVLYN VCAP_HSV7J 1204 40 ATTNPWASQEGSLSDVLYN Q69071 1203 40 ATTNPWASLPGSLGDILYN Q69063 1204 40 ATHNPWASQAGCLSDVLYN VCAP_HCMVA 1227 40

User query: Display/Full Code "HSVCAPSIDMCP"