WORKLIST ENTRIES (1):
FLGPRINGFLGI View alignment Flagellar P-ring protein signature
Type of fingerprint: COMPOUND with 9 elements
Links:
PRINTS; PR01008 FLGLRINGFLGH; PR01009 FLGMRINGFLIF
INTERPRO; IPR001782
Creation date 26-NOV-1998; UPDATE 15-JUN-1999
1. JONES, C.J., HOMMA, M. AND MACNAB, R.M.
L-, P-, and M-ring proteins of the flagellar basal body of Salmonella
typhimurium: gene sequences and deduced protein sequences.
J.BACTERIOL. 171 3890-3900 (1989).
2. HOMMA, M., KUTSUKAKE, K., HASEBE, M., IINO, T. AND MACNAB, R.M.
FlgB, FlgC, FlgF and FlgG. A family of structurally related proteins in
the flagellar basal body of Salmonella typhimurium.
J.MOL.BIOL. 211 465-477 (1990).
3.HOMMA, M., KOMEDA, Y., IINO, T. AND MACNAB, R.M.
The flaFIX gene product of Salmonella typhimurium is a flagellar basal body
component with a signal peptide for export.
J.BACTERIOL. 169 1493-1498 (1987).
The flgH, flgI and fliF genes of Salmonella typhimurium encode the major
proteins for the L, P and M rings of the flagellar basal body [1]. In fact,
the basal body consists of four rings (L,P,S and M) surrounding the
flagellar rod, which is believed to transmit motor rotation to the filament
[2]. The M ring is integral to the inner membrane of the cell, and may be
connected to the rod via the S (supramembrane) ring, which lies just distal
to it. The L and P rings reside in the outer membrane and periplasmic space,
respectively.
The sequences of the FlgH, FlgI and FliF gene products have been determined
[1]. FlgH and FlgI, which are exported across the cell membrane to their
destinations in the outer membrane and periplasmic space, have typical N-
terminal cleaved signal-peptide sequences [1,3]. FlgH is predicted to have
an extensive beta-sheet structure, in keeping with other outer membrane
proteins, and FlgI is thought to have even more beta-structure content [1].
Several aspects of the DNA sequence of these genes and their surrounds
suggest complex regulation of the flagellar gene system.
FLGPRINGFLGI is a 9-element fingerprint that provides a signature for
flagellar P-ring proteins. The fingerprint was derived from an initial
alignment of 6 sequences: the motifs were drawn from conserved regions
spanning the N-terminal two-thirds of the alignment. Three iterations on
OWL30.2 were required to reach convergence, at which point a true set
comprising 9 sequences was identified.
An update on SPTR37_9f identified a true set of 10 sequences, and 4
partial matches.
SUMMARY INFORMATION
10 codes involving 9 elements
0 codes involving 8 elements
0 codes involving 7 elements
0 codes involving 6 elements
0 codes involving 5 elements
0 codes involving 4 elements
0 codes involving 3 elements
4 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
9| 10 10 10 10 10 10 10 10 10
8| 0 0 0 0 0 0 0 0 0
7| 0 0 0 0 0 0 0 0 0
6| 0 0 0 0 0 0 0 0 0
5| 0 0 0 0 0 0 0 0 0
4| 0 0 0 0 0 0 0 0 0
3| 0 0 0 0 0 0 0 0 0
2| 0 0 1 0 0 3 1 1 2
--+----------------------------------------------
| 1 2 3 4 5 6 7 8 9
True positives..
FLGI_AGRTU FLGI_SALTY FLGI_ECOLI FLGI_RHIME
FLGI_PSEPU O30854 FLGI_CAUCR O67608
O25028 O51713
PROTEIN TITLES
FLGI_AGRTU FLAGELLAR P-RING PROTEIN PRECURSOR - AGROBACTERIUM TUMEFACIE
FLGI_SALTY FLAGELLAR P-RING PROTEIN PRECURSOR - SALMONELLA TYPHIMURIUM.
FLGI_ECOLI FLAGELLAR P-RING PROTEIN PRECURSOR - ESCHERICHIA COLI.
FLGI_RHIME FLAGELLAR P-RING PROTEIN PRECURSOR - RHIZOBIUM MELILOTI.
FLGI_PSEPU FLAGELLAR P-RING PROTEIN PRECURSOR - PSEUDOMONAS PUTIDA.
O30854 FLGI - VIBRIO CHOLERAE.
FLGI_CAUCR FLAGELLAR P-RING PROTEIN PRECURSOR - CAULOBACTER CRESCENTUS.
O67608 FLAGELLAR P-RING PROTEIN FLGI - AQUIFEX AEOLICUS.
O25028 FLAGELLAR BASAL-BODY P-RING PROTEIN (FLGI) - HELICOBACTER PY
O51713 FLAGELLAR P-RING PROTEIN (FLGI) - BORRELIA BURGDORFERI (LYME
SCAN HISTORY
OWL30_2 3 100 NSINGLE
SPTR37_9f 3 134 NSINGLE
INITIAL MOTIF SETS
FLGPRINGFLGI1 Length of motif = 16 Motif number = 1
Flagellar P-ring protein motif I - 1
PCODE ST INT
RIKDIASLQAGRDNQL FLGI_AGRTU 30 30
RIKDIVSFEGVRENQL FLGI_CAUCR 29 29
RIRDLTSVQGVRQNSL FLGI_ECOLI 21 21
RLKDIASISGVRSNQL FLGI_PSEPU 24 24
RIKDVASLQSGRDNQL FLGI_RHIME 28 28
RIRDLTSVQGVRENSL FLGI_SALTY 21 21
FLGPRINGFLGI2 Length of motif = 16 Motif number = 2
Flagellar P-ring protein motif II - 1
PCODE ST INT
LIGYGLVVGLQGTGDS FLGI_AGRTU 45 -1
LIGYGIVVGLNGTGDS FLGI_CAUCR 44 -1
LIGYGLVVGLDGTGDQ FLGI_ECOLI 36 -1
LIGYGLVVGLNGTGDQ FLGI_PSEPU 39 -1
LIGYGLVVGLQGTGDS FLGI_RHIME 43 -1
LIGYGLVVGLDGTGDQ FLGI_SALTY 36 -1
FLGPRINGFLGI3 Length of motif = 16 Motif number = 3
Flagellar P-ring protein motif III - 1
PCODE ST INT
PFTEQSMRAMLQNLGI FLGI_AGRTU 65 4
PMTKQSLEAMLERQGV FLGI_CAUCR 64 4
PFTTQTLNNMLSQLGI FLGI_ECOLI 56 4
PFTLQTFNNMLSQFGI FLGI_PSEPU 59 4
PFTDQSIRAMLQNLGI FLGI_RHIME 63 4
PFTTQTLNNMLSQLGI FLGI_SALTY 56 4
FLGPRINGFLGI4 Length of motif = 20 Motif number = 4
Flagellar P-ring protein motif IV - 1
PCODE ST INT
KNIAAVMVTANLPPFASPGS FLGI_AGRTU 90 9
KNTAAVMVTANLPPFSASGS FLGI_CAUCR 89 9
KNVAAVMVTASLPPFGRQGQ FLGI_ECOLI 82 10
KNVAAVSVHADLPPFAKPGQ FLGI_PSEPU 86 11
RNVAAVLVTATLPPFASPGS FLGI_RHIME 88 9
KNVAAVMVTASYPPFARQGQ FLGI_SALTY 82 10
FLGPRINGFLGI5 Length of motif = 18 Motif number = 5
Flagellar P-ring protein motif V - 1
PCODE ST INT
DVTVSSLGDATSLRGGNL FLGI_AGRTU 112 2
DVTVSTLGDAKSLLGGTL FLGI_CAUCR 111 2
DVVVSSMGNAKSLRGGTL FLGI_ECOLI 104 2
DITVSSIGNSKSLRGGSL FLGI_PSEPU 108 2
DVTVGSLGDATSLRGGTL FLGI_RHIME 110 2
DVVVSSMGNAKSLRGGTL FLGI_SALTY 104 2
FLGPRINGFLGI6 Length of motif = 19 Motif number = 6
Flagellar P-ring protein motif VI - 1
PCODE ST INT
LIMTSLSGADGQIYAVAQG FLGI_AGRTU 129 -1
LLVTSLQGADGQTYAVAQG FLGI_CAUCR 128 -1
LLMTPLKGVDSQVYALAQG FLGI_ECOLI 121 -1
LLMTPLKGIDGNVYAIAQG FLGI_PSEPU 125 -1
LVMTSLSGADGQIYAVAQG FLGI_RHIME 127 -1
LLMTPLKGVDSQVYALAQG FLGI_SALTY 121 -1
FLGPRINGFLGI7 Length of motif = 19 Motif number = 7
Flagellar P-ring protein motif VII - 1
PCODE ST INT
TSARVPNGAIIERELPSKF FLGI_AGRTU 169 21
TAGRIAGGGVIERETGFQM FLGI_CAUCR 169 22
NGGRITNGAVIERELPSQF FLGI_ECOLI 161 21
SAGRIPGGASVERAVPSGF FLGI_PSEPU 166 22
TAGRVPNGAIIERELPSKF FLGI_RHIME 167 21
NGGRITNGAIIERELPTQF FLGI_SALTY 161 21
FLGPRINGFLGI8 Length of motif = 19 Motif number = 8
Flagellar P-ring protein motif VIII - 1
PCODE ST INT
LQLRNPDFSTAVRVADVVN FLGI_AGRTU 195 7
LTLRNPDFTTARRVADAIN FLGI_CAUCR 195 7
LQLNDEDFSMAQQIADTIN FLGI_ECOLI 187 7
LNLNRPDFTTAKRIVDKVN FLGI_PSEPU 192 7
LQLRNPDFSTAVGMAAAIN FLGI_RHIME 193 7
LQLNDEDFTMAQQITDAIN FLGI_SALTY 187 7
FLGPRINGFLGI9 Length of motif = 13 Motif number = 9
Flagellar P-ring protein motif IX - 1
PCODE ST INT
AKVVINERTGTIV FLGI_AGRTU 261 47
AKVVIDEVAGVIV FLGI_CAUCR 256 42
AKVVINSRTGSVV FLGI_ECOLI 251 45
AKVIINSRTGTIV FLGI_PSEPU 256 45
ARVVINERTGTIV FLGI_RHIME 259 47
AKVVINSRTGSVV FLGI_SALTY 251 45
FINAL MOTIF SETS
FLGPRINGFLGI1 Length of motif = 16 Motif number = 1
Flagellar P-ring protein motif I - 3
PCODE ST INT
RIKDIASLQAGRDNQL FLGI_AGRTU 30 30
RIRDLTSVQGVRENSL FLGI_SALTY 21 21
RIRDLTSVQGVRQNSL FLGI_ECOLI 21 21
RIKDVASLQSGRDNQL FLGI_RHIME 28 28
RLKDIASISGVRSNQL FLGI_PSEPU 24 24
RIKDVAQVAGVRNNQL O30854 20 20
RIKDIVSFEGVRENQL FLGI_CAUCR 29 29
RIKDIATIEGNRYNYL O67608 23 23
KIGDIASVVGVRDNQL O25028 21 21
KLKEIADIYPTNTNFL O51713 41 41
FLGPRINGFLGI2 Length of motif = 16 Motif number = 2
Flagellar P-ring protein motif II - 3
PCODE ST INT
LIGYGLVVGLQGTGDS FLGI_AGRTU 45 -1
LIGYGLVVGLDGTGDQ FLGI_SALTY 36 -1
LIGYGLVVGLDGTGDQ FLGI_ECOLI 36 -1
LIGYGLVVGLQGTGDS FLGI_RHIME 43 -1
LIGYGLVVGLNGTGDQ FLGI_PSEPU 39 -1
LVGYGLVTGLPGTGES O30854 35 -1
LIGYGIVVGLNGTGDS FLGI_CAUCR 44 -1
LIGYGLVVGLKGTGDG O67608 38 -1
LIGYGLVIGLNGTGDK O25028 36 -1
LTGIGIVAGLAGKGDS O51713 56 -1
FLGPRINGFLGI3 Length of motif = 16 Motif number = 3
Flagellar P-ring protein motif III - 3
PCODE ST INT
PFTEQSMRAMLQNLGI FLGI_AGRTU 65 4
PFTTQTLNNMLSQLGI FLGI_SALTY 56 4
PFTTQTLNNMLSQLGI FLGI_ECOLI 56 4
PFTDQSIRAMLQNLGI FLGI_RHIME 63 4
PFTLQTFNNMLSQFGI FLGI_PSEPU 59 4
PFTDQSFNAMLQSFGI O30854 52 1
PMTKQSLEAMLERQGV FLGI_CAUCR 64 4
QFTVQSLANMLRRMGI O67608 57 3
KFTMQSISNMLESVNV O25028 55 3
ILEENNIINEIGSNNI O51713 81 9
FLGPRINGFLGI4 Length of motif = 20 Motif number = 4
Flagellar P-ring protein motif IV - 3
PCODE ST INT
KNIAAVMVTANLPPFASPGS FLGI_AGRTU 90 9
KNVAAVMVTASYPPFARQGQ FLGI_SALTY 82 10
KNVAAVMVTASLPPFGRQGQ FLGI_ECOLI 82 10
RNVAAVLVTATLPPFASPGS FLGI_RHIME 88 9
KNVAAVSVHADLPPFAKPGQ FLGI_PSEPU 86 11
KNVAAVIVTADLPAFSKQGQ O30854 78 10
KNTAAVMVTANLPPFSASGS FLGI_CAUCR 89 9
KNVAAVMVTAKVPPYAKAGM O67608 82 9
KNVAAVMITASLPPFARQGD O25028 80 9
KNIALVNVSLQVKGNTIKGS O51713 99 2
FLGPRINGFLGI5 Length of motif = 18 Motif number = 5
Flagellar P-ring protein motif V - 3
PCODE ST INT
DVTVSSLGDATSLRGGNL FLGI_AGRTU 112 2
DVVVSSMGNAKSLRGGTL FLGI_SALTY 104 2
DVVVSSMGNAKSLRGGTL FLGI_ECOLI 104 2
DVTVGSLGDATSLRGGTL FLGI_RHIME 110 2
DITVSSIGNSKSLRGGSL FLGI_PSEPU 108 2
DITVSSIGSAKSLRGGTL O30854 100 2
DVTVSTLGDAKSLLGGTL FLGI_CAUCR 111 2
DVEVSSIGDAKSLEGGTL O67608 104 2
DIHISSIGDAKSIQGGTL O25028 102 2
KACVASILDSKDLTNGIL O51713 121 2
FLGPRINGFLGI6 Length of motif = 19 Motif number = 6
Flagellar P-ring protein motif VI - 3
PCODE ST INT
LIMTSLSGADGQIYAVAQG FLGI_AGRTU 129 -1
LLMTPLKGVDSQVYALAQG FLGI_SALTY 121 -1
LLMTPLKGVDSQVYALAQG FLGI_ECOLI 121 -1
LVMTSLSGADGQIYAVAQG FLGI_RHIME 127 -1
LLMTPLKGIDGNVYAIAQG FLGI_PSEPU 125 -1
LMQTFLKGLDGQVYAVAQG O30854 117 -1
LLVTSLQGADGQTYAVAQG FLGI_CAUCR 128 -1
LLMTPLRGPDGKVYAIAQG O67608 121 -1
LVMTPLNAVDGNIYALAQG O25028 119 -1
LLKTNLKNKEGEIIAIASG O51713 138 -1
FLGPRINGFLGI7 Length of motif = 19 Motif number = 7
Flagellar P-ring protein motif VII - 3
PCODE ST INT
TSARVPNGAIIERELPSKF FLGI_AGRTU 169 21
NGGRITNGAIIERELPTQF FLGI_SALTY 161 21
NGGRITNGAVIERELPSQF FLGI_ECOLI 161 21
TAGRVPNGAIIERELPSKF FLGI_RHIME 167 21
SAGRIPGGASVERAVPSGF FLGI_PSEPU 166 22
TVGMISSGAIVEREVPNPF O30854 158 22
TAGRIAGGGVIERETGFQM FLGI_CAUCR 169 22
TVGRIPNGAILEKDLPFSA O67608 161 21
LSANIINGATIEREVSYDL O25028 148 10
NAKIGTFTFSIEKDNQNIF O51713 258 101
FLGPRINGFLGI8 Length of motif = 19 Motif number = 8
Flagellar P-ring protein motif VIII - 3
PCODE ST INT
LQLRNPDFSTAVRVADVVN FLGI_AGRTU 195 7
LQLNDEDFTMAQQITDAIN FLGI_SALTY 187 7
LQLNDEDFSMAQQIADTIN FLGI_ECOLI 187 7
LQLRNPDFSTAVGMAAAIN FLGI_RHIME 193 7
LNLNRPDFTTAKRIVDKVN FLGI_PSEPU 192 7
FNLFESDFTTAQRLADAVN O30854 184 7
LTLRNPDFTTARRVADAIN FLGI_CAUCR 195 7
IYLDEPDFTTAKNVQDVIN O67608 186 6
LSLKNPNFKNAIQVQNTLN O25028 174 7
IFLSKNNKTTIQVNSMKLN O51713 275 -2
FLGPRINGFLGI9 Length of motif = 13 Motif number = 9
Flagellar P-ring protein motif IX - 3
PCODE ST INT
AKVVINERTGTIV FLGI_AGRTU 261 47
AKVVINSRTGSVV FLGI_SALTY 251 45
AKVVINSRTGSVV FLGI_ECOLI 251 45
ARVVINERTGTIV FLGI_RHIME 259 47
AKVIINSRTGTIV FLGI_PSEPU 256 45
AKIIVNSRTGTIV O30854 248 45
AKVVIDEVAGVIV FLGI_CAUCR 256 42
AKVVIDGRSGIVL O67608 248 43
NKIIVDEKSGTIV O25028 236 43
AAQKINKLNGELI O51713 314 20
User query: Display/Full Code "FLGPRINGFLGI"