WORKLIST ENTRIES (1):
AUTOINDCRSYN View alignment View Structure Autoinducer synthesis protein signature
Type of fingerprint: COMPOUND with 7 elements
Links:
PROSITE; PS00949 AUTOINDUCERS_SYNTH
PFAM; PF00765 Autoind_synth
INTERPRO; IPR001690
Creation date 02-JUN-2001
1. BASSLER, B.L.
How bacteria talk to each other: regulation of gene expression by quorum
sensing.
CURR.OPIN.MICROBIOL. 2 582-587 (1999).
2. SURETTE, M.G., MILLER, M.B. AND BASSLER, B.L.
Quorum sensing in Escherichia coli, Salmonella typhimurium, and Vibrio
harveyi: A new family of genes responsible for autoinducer production.
PROC.NATL.ACAD.SCI.U.S.A. 96 1639-1644 (1999).
3. FUQUA W.C. AND WINANS S.C.
A LuxR-LuxI type regulatory system activates Agrobacterium Ti plasmid
conjugal transfer in the presence of a plant tumor metabolite.
J.BACTERIOL. 176 2796-2806 (1994).
4. ENGEBRECHT, J. AND SILVERMAN, M.
Nucleotide sequence of the regulatory locus controlling expression of
bacterial genes for bioluminescence.
NUCLEIC ACIDS RES. 15 10455-10467 (1987).
5. SWIFT, S., WINSON, M.K., CHAN, P.F., BAINTON, N.J., BIRDSALL, M.,
REEVES, P.J., REES, C.E.D., CHHABRA, S.R., HILL, P.J., THROUP, J.P.,
BYCROFT, B.W., SALMOND, G.P.C., WILLIAMS, P. AND STEWART, G.S.A.B.
A novel strategy for the isolation of luxI homologues: evidence for the
widespread distribution of a LuxR:LuxI superfamily in enteric bacteria.
MOL.MICROBIOL. 10 511-520 (1993).
6. LATIFI, A., WINSON, M.K., FOGLINO, M., BYCROFT, B.W., STEWART, G.S.A.B.,
LAZDUNSKI, A. AND WILLIAMS, P.
Multiple homologues of LuxR and LuxI control expression of virulence
determinants and secondary metabolites through quorum sensing in
Pseudomonas aeruginosa PAO1.
MOL.MICROBIOL. 17 333-343 (1995).
Bacterial species have many methods of controlling gene expression and cell
growth. Regulation of gene expression in response to changes in cell density
is termed quorum sensing [1,2]. Quorum-sensing bacteria produce, release and
respond to hormone-like molecules (autoinducers) that accumulate in the
external environment as the cell population grows. Once a threshold of these
molecules is reached, a signal transduction cascade is triggered that
ultimately leads to behavioural changes in the bacterium [2]. Autoinducers
are thus clearly important mediators of molecular communication.
Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated
by octopine, a metabolite released from plant tumours [3]. Octopine causes
conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI),
and exogenous AAI further stimulates conjugation [3]. The putative AAI
synthase and an AAI-responsive transcriptional regulator have been found
to be encoded by the Ti plasmid traI and traR genes, respectively [3]. TraR
and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio
fischeri, and AAI is similar in structure to the diffusable V.fischeri
autoinducer, the inducing ligand of LuxR [3]. TraR activates target genes
in the presence of AAI and also activates traR and traI themselves, creating
two positive-feedback loops [3]. TraR-AAI-mediated activation in wild-type
Agrobacterium strains is enhanced by culturing on solid media, suggesting a
possible role in cell density sensing [3].
Production of light by the marine bacterium Vibrio fischeri and by
recombinant hosts containing cloned lux genes is controlled by the density
of the culture [4]. Density-dependent regulation of lux gene expression has
been shown to require a locus consisting of the luxR and luxI genes [4].
In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine
lactone (OHHL) acts as the autoinducer by binding to transcriptional
regulatory proteins and activating them [5,6]. OHHL and related molecules,
such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI)
homoserine lactones, are produced by a family of proteins that share a high
level of sequence similarity.
AUTOINDCRSYN is a 7-element fingerprint that provides a signature for
autoinducer synthesis proteins. The fingerprint was derived from an initial
alignment of 18 sequences: the motifs were drawn from conserved regions
spanning virtually the full alignment length. Two iterations on SPTR39_15f
were required to reach convergence, at which point a true set comprising 30
sequences was identified. Several partial matches were also found, all of
which are autoinducer synthesis proteins that fail to make significant
matches with one or more motifs.
SUMMARY INFORMATION
30 codes involving 7 elements
1 codes involving 6 elements
3 codes involving 5 elements
1 codes involving 4 elements
1 codes involving 3 elements
1 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
7| 30 30 30 30 30 30 30
6| 1 1 1 1 0 1 1
5| 3 3 3 3 0 3 0
4| 1 1 1 1 0 0 0
3| 1 1 1 0 0 0 0
2| 1 0 1 0 0 0 0
--+------------------------------------
| 1 2 3 4 5 6 7
True positives..
CARI_ERWCA O30345 ECHI_ERWCH EXPI_ERWCH
O85823 EAGI_ENTAG Q9RH44 Q9XDD0
EXPI_ERWCA YUKI_YERRU YENI_YEREN SWRI_SERLI
Q9L3I9 ESAI_ERWST TRAI_AGRT5 O66168
Q9L6U6 PSYI_PSESZ TRAI_AGRT6 O85693
LUXJ_VIBFI TRAI_RHISN LUXI_VIBFI PHZI_PSEAR
Q9R9G9 PHZI_PSEFL VANI_VIBAN ASAI_AERSA
AHYI_AERHY RHLI_PSEAE
Subfamily: Codes involving 6 elements
Subfamily True positives..
LASI_PSEAE
Subfamily: Codes involving 5 elements
Subfamily True positives..
SOLI_BURSO Q9L6U4 Q9ZIU1
Subfamily: Codes involving 4 elements
Subfamily True positives..
O30761
Subfamily: Codes involving 3 elements
Subfamily True positives..
Q9KJ70
Subfamily: Codes involving 2 elements
Subfamily True positives..
RAII_RHIET
PROTEIN TITLES
CARI_ERWCA AUTOINDUCER SYNTHESIS PROTEIN CARI - Erwinia carotovora.
O30345 LUXI HOMOLOG - Erwinia carotovora subsp. betavasculorum.
ECHI_ERWCH AUTOINDUCER SYNTHESIS PROTEIN ECHI - Erwinia chrysanthemi.
EXPI_ERWCH AUTOINDUCER SYNTHESIS PROTEIN EXPI - Erwinia chrysanthemi.
O85823 N-ACYLHOMOSERINE LACTONE SYNTHASE YSPI - Yersinia pseudotube
EAGI_ENTAG AUTOINDUCER SYNTHESIS PROTEIN EAGI - Enterobacter agglomeran
Q9RH44 HOMOSERINE LACTONE SYNTHASE YPEI - Yersinia pestis.
Q9XDD0 N-ACYLHOMOSERINE LACTONE SYNTHASE YPSI - Yersinia pseudotube
EXPI_ERWCA AUTOINDUCER SYNTHESIS PROTEIN EXPI - Erwinia carotovora.
YUKI_YERRU AUTOINDUCER SYNTHESIS PROTEIN YUKI - Yersinia ruckeri.
YENI_YEREN AUTOINDUCER SYNTHESIS PROTEIN YENI - Yersinia enterocolitica
SWRI_SERLI AUTOINDUCER SYNTHESIS PROTEIN SWRI - Serratia liquefaciens.
Q9L3I9 N-ACYL HOMOSERINE LACTONE SYNTHASE, SMAI - Serratia sp. ATCC
ESAI_ERWST AUTOINDUCER SYNTHESIS PROTEIN ESAI - Erwinia stewartii.
TRAI_AGRT5 AUTOINDUCER SYNTHESIS PROTEIN TRAI - Agrobacterium tumefacie
O66168 TRAI - Agrobacterium tumefaciens.
Q9L6U6 PUTATIVE ACYLHOMOSERINE LACTONE SYNTHASE - Pseudomonas fluor
PSYI_PSESZ AUTOINDUCER SYNTHESIS PROTEIN PSYI - Pseudomonas syringae (p
TRAI_AGRT6 AUTOINDUCER SYNTHESIS PROTEIN TRAI - Agrobacterium tumefacie
O85693 ACYL HOMOSERINE LACTONE BIOSYNTHETIC PROTEIN - Pseudomonas s
LUXJ_VIBFI AUTOINDUCER SYNTHESIS PROTEIN LUXI - Vibrio fischeri.
TRAI_RHISN PROBABLE AUTOINDUCER SYNTHESIS PROTEIN TRAI - Rhizobium sp.
LUXI_VIBFI AUTOINDUCER SYNTHESIS PROTEIN LUXI - Vibrio fischeri.
PHZI_PSEAR AUTOINDUCER SYNTHESIS PROTEIN PHZI - Pseudomonas aureofacien
Q9R9G9 AUTOINDUCER SYNTHASE PHZI - Pseudomonas chlororaphis (Pseudo
PHZI_PSEFL AUTOINDUCER SYNTHESIS PROTEIN PHZI - Pseudomonas fluorescens
VANI_VIBAN AUTOINDUCER SYNTHESIS PROTEIN VANI - Vibrio anguillarum.
ASAI_AERSA AUTOINDUCER SYNTHESIS PROTEIN ASAI - Aeromonas salmonicida.
AHYI_AERHY AUTOINDUCER SYNTHESIS PROTEIN AHYI - Aeromonas hydrophila.
RHLI_PSEAE AUTOINDUCER SYNTHESIS PROTEIN RHLI - Pseudomonas aeruginosa.
LASI_PSEAE AUTOINDUCER SYNTHESIS PROTEIN LASI - Pseudomonas aeruginosa.
SOLI_BURSO AUTOINDUCER SYNTHESIS PROTEIN SOLI - Burkholderia solanacear
Q9L6U4 PUTATIVE ACYLHOMOSERINE LACTONE SYNTHASE - Pseudomonas fluor
Q9ZIU1 PUTATIVE ACYL HOMOSERINE LACTONE SYNTHASE - Burkholderia cep
O30761 AUTOINDUCER SYNTHASE - Rhodobacter sphaeroides (Rhodopseudom
Q9KJ70 AHL-SYNTHASE CINI - Rhizobium leguminosarum.
RAII_RHIET AUTOINDUCER SYNTHESIS PROTEIN RAII - Rhizobium etli.
SCAN HISTORY
SPTR39_15f 2 185 NSINGLE
INITIAL MOTIF SETS
AUTOINDCRSYN1 Length of motif = 20 Motif number = 1
Autoinducer synthesis protein motif I - 1
PCODE ST INT
QMHRLRATVFGGRLEWDVSI TRAI_AGRT5 20 20
QMHRLRAEVFGNRLKWDVAI TRAI_AGRT6 20 20
SHHELRARVFSDRLGWEVNV TRAI_RHISN 20 20
GILSLRYQVFKQRLEWDLVV LUXI_VIBFI 20 20
GILSLRYQVFKRRLEWDLVS LUXJ_VIBFI 20 20
EIFSLREITFKDRLDWKVTC YENI_YEREN 19 19
TLYSMRKKIFSDRLEWKVRV PSYI_PSESZ 22 22
ELYRFRNRVFSDRLGWDVES ASAI_AERSA 19 19
EVFALRKGTFKDRLDWTVNC EXPI_ERWCH 19 19
ELYKLRKKTFSDRLGWEVIC ESAI_ERWST 19 19
EVFTLRKDTFKDRLDWAVNC ECHI_ERWCH 19 19
ELFTLRKETFKDRLNWAVQC CARI_ERWCA 19 19
DLYKLRKITFKDRLDWAVNC EAGI_ENTAG 19 19
ELFTLRKETFKDRLNWAVKC EXPI_ERWCA 19 19
ELGRYRHQVFIEKLGWDVVS RHLI_PSEAE 19 19
MLGRFRHEQFVEKLGWRLPI PHZI_PSEFL 18 18
MLGRFRHEQFVEKLGWRLPA PHZI_PSEAR 18 18
ELFSLRKKTFKDRLDWLVNC SWRI_SERLI 19 19
AUTOINDCRSYN2 Length of motif = 23 Motif number = 2
Autoinducer synthesis protein motif II - 1
PCODE ST INT
IAGEERDQYDNFKPSYLLAITDS TRAI_AGRT5 40 0
EDGGERDQYDELSPTYILATFGG TRAI_AGRT6 40 0
VGGCESDTFDDLQPTYILAVSSN TRAI_RHISN 40 0
ENNLESDEYDNSNAEYIYACDDT LUXI_VIBFI 40 0
EDNLESDEYDNSNAEYIYACDDA LUXJ_VIBFI 40 0
IDGKESDQYDDENTNYILGTIDD YENI_YEREN 39 0
SHAFEFDEYDNAATTYLVGSWNG PSYI_PSESZ 42 0
HRGLEQDSFDTPDTHWVLIEDEE ASAI_AERSA 39 0
INGMEFDEYDNEHTTYLLGVKEG EXPI_ERWCH 39 0
SQGMESDEFDGPGTRYILGICEG ESAI_ERWST 39 0
INGMEFDEYDNEHTTYLLGVKEG ECHI_ERWCH 39 0
TDGMEFDQYDNNNTTYLFGIKDN CARI_ERWCA 39 0
SNDMEFDEFDNSGTRYMLGIYDN EAGI_ENTAG 39 0
INGMEFDQYDDDNATYLFGVEGD EXPI_ERWCA 39 0
VRDQEFDQFDHPQTRYIVAMSRQ RHLI_PSEAE 42 3
QAGYEWDQYDTEHARYLLAFNEH PHZI_PSEFL 41 3
QAGCEWDQYDTEHARYLLAFNED PHZI_PSEAR 41 3
ENNMEFDEYDNRHATYIFGTYQN SWRI_SERLI 39 0
AUTOINDCRSYN3 Length of motif = 19 Motif number = 3
Autoinducer synthesis protein motif III - 1
PCODE ST INT
RVAGCVRLLPACGPTMLEQ TRAI_AGRT5 64 1
RVVGCARLLAPSGPTMLER TRAI_AGRT6 64 1
RVVGCARLLPALGPTMVAN TRAI_RHISN 64 1
NVSGCWRLLPTTGDYMLKS LUXI_VIBFI 64 1
EVNGCWRLLPTTGDYMLKT LUXJ_VIBFI 64 1
TIVCSVRFIDMKYPTMITG YENI_YEREN 62 0
VPLAGLRLINTCDPYMLEG PSYI_PSESZ 65 0
GLCGCIRLLSCAQDYMLPS ASAI_AERSA 62 0
KIICSVRFIEMKYPNMITG EXPI_ERWCH 62 0
QLVCSVRFTSLDRPNMITH ESAI_ERWST 62 0
KVICSVRFIEIKYPNMITG ECHI_ERWCH 62 0
TVICSLRFIETKYPNMITG CARI_ERWCA 62 0
QLVCSVRFIDLRLPNMITH EAGI_ENTAG 62 0
QVICSSRLIETKYPNMITG EXPI_ERWCA 62 0
GICGCARLLPTTDAYLLKD RHLI_PSEAE 65 0
SIVGCARLIPTTFPNLLEG PHZI_PSEFL 65 1
AIVGCARLIPTTFPNLLEG PHZI_PSEAR 65 1
HVICSLRFIETKYPNMISD SWRI_SERLI 62 0
AUTOINDCRSYN4 Length of motif = 13 Motif number = 4
Autoinducer synthesis protein motif IV - 1
PCODE ST INT
SGMVESSRFCVDT TRAI_AGRT5 97 14
TAMIETSRFCVDT TRAI_AGRT6 97 14
SSMVESSRFCVDT TRAI_RHISN 97 14
PNIVELSRFAVGK LUXI_VIBFI 97 14
PNIVELSRFAVGK LUXJ_VIBFI 97 14
DGFIESSRFFVEK YENI_YEREN 94 13
AAMAESSRFFVDT PSYI_PSESZ 97 13
SDVWELTRLAIDA ASAI_AERSA 95 14
GNYIESSRFFVDR EXPI_ERWCH 94 13
AYGTESSRFFVDK ESAI_ERWST 93 12
GNYIESSRFFVDR ECHI_ERWCH 94 13
GNYLESSRFFVDK CARI_ERWCA 94 13
GDYIESSRFFVDK EAGI_ENTAG 94 13
GKYIESSRFFVDK EXPI_ERWCA 94 13
PSVWELSRYAASA RHLI_PSEAE 97 13
PAIWEMTRFTTRE PHZI_PSEFL 97 13
PAIWEMTRFTTRE PHZI_PSEAR 97 13
GNYVEASRLFIDK SWRI_SERLI 95 14
AUTOINDCRSYN5 Length of motif = 22 Motif number = 5
Autoinducer synthesis protein motif V - 1
PCODE ST INT
ATLTLFAGIIEWSMASGYTEIV TRAI_AGRT5 123 13
ATLTMFAGIIEWSMANGYDEIV TRAI_AGRT6 123 13
ATLTMFAGIIEWSVANRYTEIV TRAI_RHISN 123 13
ITMKLFEAIYKHAVSQGITEYV LUXI_VIBFI 121 11
ITMKLFQAIYKHAVSQGITEYV LUXJ_VIBFI 121 11
LSTILFLAMVNYARDRGHKGIL YENI_YEREN 119 12
LTEMLLFSMHNHAALSGLQSII PSYI_PSESZ 122 12
LTCVIFREVYAFARAKGIRELV ASAI_AERSA 120 12
ACLTLFLAMINYARKYHYDGIL EXPI_ERWCH 119 12
ISQVLFLAMVNWAQNNAYGNIY ESAI_ERWST 118 12
ACVTLFLAMINYARKYHYDGIL ECHI_ERWCH 119 12
ISSMLFLSMINYSKDKGYDGIY CARI_ERWCA 119 12
ISYVLFLSMINYARHHGHTGIY EAGI_ENTAG 119 12
VSTMFFLATVNYSKSKGYDGVY EXPI_ERWCA 119 12
LAMKIFWSSLQCAWYLGASSVV RHLI_PSEAE 115 5
LAMPLFWKTLKTASLAGADAIV PHZI_PSEFL 112 2
LAMPLFWRSLKTASLAGADAIV PHZI_PSEAR 112 2
ISAMLFLSMINYARNCGYEGIY SWRI_SERLI 120 12
AUTOINDCRSYN6 Length of motif = 22 Motif number = 6
Autoinducer synthesis protein motif VI - 1
PCODE ST INT
TATDLRFERILKRAGWPMRRLG TRAI_AGRT5 145 0
TATDLRFERILKRAGWPMTRLG TRAI_AGRT6 145 0
TVTDLRFERILARVGWPLQRIG TRAI_RHISN 145 0
TVTSTAIERFLKRIKVPCHRIG LUXI_VIBFI 143 0
TVTSIAIERFLKRIKVPCHRIG LUXJ_VIBFI 143 0
TVVSRGMFILLKRSGWNITVLN YENI_YEREN 141 0
TVVSKAMARIVRKSGWEHHVLS PSYI_PSESZ 144 0
AVVSLPVERIFRRLGLPIERLG ASAI_AERSA 142 0
TIVSHPMLTLLKRSGWRISIIQ EXPI_ERWCH 141 0
TIVSRAMLKILTRSGWQIKVIK ESAI_ERWST 140 0
TIVSHPMLTLLKRSGWRISIIQ ECHI_ERWCH 141 0
TIVSHPMLTILKRSGWGIRVVE CARI_ERWCA 141 0
TIVSRAMLTIAKRSGWEIEVIK EAGI_ENTAG 141 0
TIVSHPMLTILKRSGWKISIVE EXPI_ERWCA 141 0
AVTTTAMERYFVRNGVILQRLG RHLI_PSEAE 137 0
GIVNSTMERYYKINGVKYERLG PHZI_PSEFL 134 0
GIVNSTMERYYKINGVHYERLG PHZI_PSEAR 134 0
AIISHPMRIIFQRSGWHISVVK SWRI_SERLI 142 0
AUTOINDCRSYN7 Length of motif = 18 Motif number = 7
Autoinducer synthesis protein motif VII - 1
PCODE ST INT
EPTAIGNTIAIAGRLPAD TRAI_AGRT5 167 0
EPVAIGNTVAVAGHLPAD TRAI_AGRT6 167 0
EPRPIGATVAVAGTLPAK TRAI_RHISN 167 0
EIHVLGDTKSVVLSMPIN LUXI_VIBFI 167 2
EIHLLGNTRSVVLSMPIN LUXJ_VIBFI 167 2
QGESEKNEVIYLLHLGID YENI_YEREN 163 0
TGEASPGETVLLLEMPVT PSYI_PSESZ 166 0
QAVDLGAVRGVGIRFHLD ASAI_AERSA 166 2
QGLSEKQEKIYLLHLPTD EXPI_ERWCH 163 0
EAFLTEKERIYLLTLPAG ESAI_ERWST 162 0
QGLSEKQERIYLLHLPTD ECHI_ERWCH 163 0
QGLSEKEERVYLVFLPVD CARI_ERWCA 163 0
EGFVSENEPIYLLRLPID EAGI_ENTAG 163 0
QGMSEKHERVYLLFLPVD EXPI_ERWCA 163 0
PPQKVKGETLVAISFPAY RHLI_PSEAE 159 0
SVIDHQNEKILAIKLSAH PHZI_PSEFL 156 0
PVTVHQNEKILAIKLSAH PHZI_PSEAR 156 0
TGCSEKNKNIYLIYMPID SWRI_SERLI 164 0
FINAL MOTIF SETS
AUTOINDCRSYN1 Length of motif = 20 Motif number = 1
Autoinducer synthesis protein motif I - 2
PCODE ST INT
ELFTLRKETFKDRLNWAVQC CARI_ERWCA 19 19
ELFTLRKETFKDRLNWAVQC O30345 19 19
EVFTLRKDTFKDRLDWAVNC ECHI_ERWCH 19 19
EVFALRKGTFKDRLDWTVNC EXPI_ERWCH 19 19
DLYKLRKKTFKDRLNWEVNC O85823 19 19
DLYKLRKITFKDRLDWAVNC EAGI_ENTAG 19 19
EIFTLRKITFKDRLDWKVTC Q9RH44 19 19
EIFTLRKITFKDRLDWKVTC Q9XDD0 19 19
ELFTLRKETFKDRLNWAVKC EXPI_ERWCA 19 19
DLYRLRKKTFKDRLQWAVNC YUKI_YERRU 19 19
EIFSLREITFKDRLDWKVTC YENI_YEREN 19 19
ELFSLRKKTFKDRLDWLVNC SWRI_SERLI 19 19
ELFSLRKKTFKDRLNWRVSC Q9L3I9 19 19
ELYKLRKKTFSDRLGWEVIC ESAI_ERWST 19 19
QMHRLRATVFGGRLEWDVSI O66168 20 20
QMHRLRATVFGGRLEWDVSI TRAI_AGRT5 20 20
DLYGLRKEVFADRLNWKVNV Q9L6U6 21 21
TLYSMRKKIFSDRLEWKVRV PSYI_PSESZ 22 22
QMHRLRAEVFGNRLKWDVAI TRAI_AGRT6 20 20
TLYALRKKIFSDRLEWKVRV O85693 22 22
GILSLRYQVFKRRLEWDLVS LUXJ_VIBFI 20 20
SHHELRARVFSDRLGWEVNV TRAI_RHISN 20 20
GILSLRYQVFKQRLEWDLVV LUXI_VIBFI 20 20
MLGRFRHEQFVEKLGWRLPA PHZI_PSEAR 18 18
MLGRFRHEQFVEKLGWRLPA Q9R9G9 18 18
MLGRFRHEQFVEKLGWRLPI PHZI_PSEFL 18 18
SLLKLRYKVFSQRLQWELKT VANI_VIBAN 20 20
ELYRFRNRVFSDRLGWDVES ASAI_AERSA 19 19
ELYRFRNRVFSDRLGWDVES AHYI_AERHY 19 19
ELGRYRHQVFIEKLGWDVVS RHLI_PSEAE 19 19
AUTOINDCRSYN2 Length of motif = 23 Motif number = 2
Autoinducer synthesis protein motif II - 2
PCODE ST INT
TDGMEFDQYDNNNTTYLFGIKDN CARI_ERWCA 39 0
TDGMEFDQYDNNNTTYLFGIKDN O30345 39 0
INGMEFDEYDNEHTTYLLGVKEG ECHI_ERWCH 39 0
INGMEFDEYDNEHTTYLLGVKEG EXPI_ERWCH 39 0
SNGMEFDEYDNSDTRYLLGIYQG O85823 39 0
SNDMEFDEFDNSGTRYMLGIYDN EAGI_ENTAG 39 0
IDGKESDQYDDENTNYLLGTIDD Q9RH44 39 0
IDGKESDQYDDENTNYLLGTIDD Q9XDD0 39 0
INGMEFDQYDDDNATYLFGVEGD EXPI_ERWCA 39 0
SNDMEFDEYDNPNTRYLLGIYGN YUKI_YERRU 39 0
IDGKESDQYDDENTNYILGTIDD YENI_YEREN 39 0
ENNMEFDEYDNRHATYIFGTYQN SWRI_SERLI 39 0
EQNMEFDVYDNKNTTYIFGVYEG Q9L3I9 39 0
SQGMESDEFDGPGTRYILGICEG ESAI_ERWST 39 0
IAGEERDQYDNFKPSYLLAITDS O66168 40 0
IAGEERDQYDNFKPSYLLAITDS TRAI_AGRT5 40 0
RDDIEFDEYDNERTTYLVGTWKN Q9L6U6 41 0
SHAFEFDEYDNAATTYLVGSWNG PSYI_PSESZ 42 0
EDGGERDQYDELSPTYILATFGG TRAI_AGRT6 40 0
SQAFEFDDYDSAAATYLIGSWNG O85693 42 0
EDNLESDEYDNSNAEYIYACDDA LUXJ_VIBFI 40 0
VGGCESDTFDDLQPTYILAVSSN TRAI_RHISN 40 0
ENNLESDEYDNSNAEYIYACDDT LUXI_VIBFI 40 0
QAGCEWDQYDTEHARYLLAFNED PHZI_PSEAR 41 3
QPGCEWDQYDTEHARYLLAFNED Q9R9G9 41 3
QAGYEWDQYDTEHARYLLAFNEH PHZI_PSEFL 41 3
NRGMETDEYDVPEAHYLYAKEEQ VANI_VIBAN 40 0
HRGLEQDSFDTPDTHWVLIEDEE ASAI_AERSA 39 0
HRGLEQDSFDTPDTHWVLIEDEE AHYI_AERHY 39 0
VRDQEFDQFDHPQTRYIVAMSRQ RHLI_PSEAE 42 3
AUTOINDCRSYN3 Length of motif = 19 Motif number = 3
Autoinducer synthesis protein motif III - 2
PCODE ST INT
TVICSLRFIETKYPNMITG CARI_ERWCA 62 0
TVICSLRFIETKYPNMITG O30345 62 0
KVICSVRFIEIKYPNMITG ECHI_ERWCH 62 0
KIICSVRFIEMKYPNMITG EXPI_ERWCH 62 0
QLICSVRFIELHLPNMITH O85823 62 0
QLVCSVRFIDLRLPNMITH EAGI_ENTAG 62 0
TLVCSVRFVEMQYPTMITG Q9RH44 62 0
TLVCSVRFVEMQYPTMITG Q9XDD0 62 0
QVICSSRLIETKYPNMITG EXPI_ERWCA 62 0
QLICSVRFIELHRPNMITH YUKI_YERRU 62 0
TIVCSVRFIDMKYPTMITG YENI_YEREN 62 0
HVICSLRFIETKYPNMISD SWRI_SERLI 62 0
SIICSLRFIETRFPNMIID Q9L3I9 62 0
QLVCSVRFTSLDRPNMITH ESAI_ERWST 62 0
RVAGCVRLLPACGPTMLEQ O66168 64 1
RVAGCVRLLPACGPTMLEQ TRAI_AGRT5 64 1
VPLAGLRLINTLDPYMVEG Q9L6U6 64 0
VPLAGLRLINTCDPYMLEG PSYI_PSESZ 65 0
RVVGCARLLAPSGPTMLER TRAI_AGRT6 64 1
VPLAGLRLINTCDPYMLDG O85693 65 0
EVNGCWRLLPTTGDYMLKT LUXJ_VIBFI 64 1
RVVGCARLLPALGPTMVAN TRAI_RHISN 64 1
NVSGCWRLLPTTGDYMLKS LUXI_VIBFI 64 1
AIVGCARLIPTTFPNLLEG PHZI_PSEAR 65 1
AIVGCARLIPTTFPNLLEG Q9R9G9 65 1
SIVGCARLIPTTFPNLLEG PHZI_PSEFL 65 1
HLVGCWRILPTTSRYMLKD VANI_VIBAN 64 1
GLCGCIRLLSCAQDYMLPS ASAI_AERSA 62 0
GLCGCIRLLSCAKDYMLPS AHYI_AERHY 62 0
GICGCARLLPTTDAYLLKD RHLI_PSEAE 65 0
AUTOINDCRSYN4 Length of motif = 13 Motif number = 4
Autoinducer synthesis protein motif IV - 2
PCODE ST INT
GNYLESSRFFVDK CARI_ERWCA 94 13
GNYLESTRFFVDK O30345 94 13
GNYIESSRFFVDR ECHI_ERWCH 94 13
GNYIESSRFFVDR EXPI_ERWCH 94 13
RGYIESSRFFVDK O85823 94 13
GDYIESSRFFVDK EAGI_ENTAG 94 13
DGFIESSRFFVEK Q9RH44 94 13
DGFIESSRFFVEK Q9XDD0 94 13
GKYIESSRFFVDK EXPI_ERWCA 94 13
GNYIESSRFFVDK YUKI_YERRU 94 13
DGFIESSRFFVEK YENI_YEREN 94 13
GNYVEASRLFIDK SWRI_SERLI 95 14
GNHIEASRLFIDK Q9L3I9 94 13
AYGTESSRFFVDK ESAI_ERWST 93 12
SGMVESSRFCVDT O66168 97 14
SGMVESSRFCVDT TRAI_AGRT5 97 14
ALMAESSRFFVDK Q9L6U6 96 13
AAMAESSRFFVDT PSYI_PSESZ 97 13
TAMIETSRFCVDT TRAI_AGRT6 97 14
AGMAESSRFFVDT O85693 97 13
PNIVELSRFAVGK LUXJ_VIBFI 97 14
SSMVESSRFCVDT TRAI_RHISN 97 14
PNIVELSRFAVGK LUXI_VIBFI 97 14
PAIWEMTRFTTRE PHZI_PSEAR 97 13
PAIWEMTRFTTRE Q9R9G9 97 13
PAIWEMTRFTTRE PHZI_PSEFL 97 13
KEIYELSRFAVDK VANI_VIBAN 97 14
SDVWELTRLAIDA ASAI_AERSA 95 14
NDVWELTRLAIDA AHYI_AERHY 95 14
PSVWELSRYAASA RHLI_PSEAE 97 13
AUTOINDCRSYN5 Length of motif = 22 Motif number = 5
Autoinducer synthesis protein motif V - 2
PCODE ST INT
ISSMLFLSMINYSKDKGYDGIY CARI_ERWCA 119 12
ISSMLFLSMINYSRDKGYDGIY O30345 119 12
ACVTLFLAMINYARKYHYDGIL ECHI_ERWCH 119 12
ACLTLFLAMINYARKYHYDGIL EXPI_ERWCH 119 12
ISYLFFLSIINYSRHNGYTGIY O85823 119 12
ISYVLFLSMINYARHHGHTGIY EAGI_ENTAG 119 12
LSAILFLSMVNYARNRGYKGIL Q9RH44 119 12
LSAILFLSMVNYARNCGYKGIL Q9XDD0 119 12
VSTMFFLATVNYSKSKGYDGVY EXPI_ERWCA 119 12
ISYVLFLAVINYTRHHKHTGIY YUKI_YERRU 119 12
LSTILFLAMVNYARDRGHKGIL YENI_YEREN 119 12
ISAMLFLSMINYARNCGYEGIY SWRI_SERLI 120 12
ISLLLFLSMINYARSLGYEGIY Q9L3I9 119 12
ISQVLFLAMVNWAQNNAYGNIY ESAI_ERWST 118 12
ATLTLFAGIIEWSMASGYTEIV O66168 123 13
ATLTLFAGIIEWSMASGYTEIV TRAI_AGRT5 123 13
LTEMLLLCMHNHAAHSGLESII Q9L6U6 121 12
LTEMLLFSMHNHAALSGLQSII PSYI_PSESZ 122 12
ATLTMFAGIIEWSMANGYDEIV TRAI_AGRT6 123 13
LTEMLLFSMHNHAASAGLESII O85693 122 12
ITMKLFQAIYKHAVSQGITEYV LUXJ_VIBFI 121 11
ATLTMFAGIIEWSVANRYTEIV TRAI_RHISN 123 13
ITMKLFEAIYKHAVSQGITEYV LUXI_VIBFI 121 11
LAMPLFWRSLKTASLAGADAIV PHZI_PSEAR 112 2
LAMPLFWRSLKTASLAGADAIV Q9R9G9 112 2
LAMPLFWKTLKTASLAGADAIV PHZI_PSEFL 112 2
VTLQMFQSLYHHAQQYHINAYV VANI_VIBAN 121 11
LTCVIFREVYAFARAKGIRELV ASAI_AERSA 120 12
LTCIIFREVYAFAKAQGIRELV AHYI_AERHY 120 12
LAMKIFWSSLQCAWYLGASSVV RHLI_PSEAE 115 5
AUTOINDCRSYN6 Length of motif = 22 Motif number = 6
Autoinducer synthesis protein motif VI - 2
PCODE ST INT
TIVSHPMLTILKRSGWGIRVVE CARI_ERWCA 141 0
TIVSHPMLTILKRSGWGISVVE O30345 141 0
TIVSHPMLTLLKRSGWRISIIQ ECHI_ERWCH 141 0
TIVSHPMLTLLKRSGWRISIIQ EXPI_ERWCH 141 0
TIVSRAMLTILKRSGWQVEVIK O85823 141 0
TIVSRAMLTIAKRSGWEIEVIK EAGI_ENTAG 141 0
TVVSRGMYTILKRSGWGITVIN Q9RH44 141 0
TVVSRGMYTILKRSGWGITVIN Q9XDD0 141 0
TIVSHPMLTILKRSGWKISIVE EXPI_ERWCA 141 0
TIVSRAMLTILKRSGWQFDVIK YUKI_YERRU 141 0
TVVSRGMFILLKRSGWNITVLN YENI_YEREN 141 0
AIISHPMRIIFQRSGWHISVVK SWRI_SERLI 142 0
AIVSHPMLIIFQRSGWQVSIVE Q9L3I9 141 0
TIVSRAMLKILTRSGWQIKVIK ESAI_ERWST 140 0
TATDLRFERILKRAGWPMRRLG O66168 145 0
TATDLRFERILKRAGWPMRRLG TRAI_AGRT5 145 0
TVVSNAMGRIVRNAGWHYEILD Q9L6U6 143 0
TVVSKAMARIVRKSGWEHHVLS PSYI_PSESZ 144 0
TATDLRFERILKRAGWPMTRLG TRAI_AGRT6 145 0
TVVSKAMARIVRKSGWEHRVLA O85693 144 0
TVTSIAIERFLKRIKVPCHRIG LUXJ_VIBFI 143 0
TVTDLRFERILARVGWPLQRIG TRAI_RHISN 145 0
TVTSTAIERFLKRIKVPCHRIG LUXI_VIBFI 143 0
GIVNSTMERYYKINGVHYERLG PHZI_PSEAR 134 0
GIVNSTMERYYKINGVHYERLG Q9R9G9 134 0
GIVNSTMERYYKINGVKYERLG PHZI_PSEFL 134 0
TVTSASVEKLIKRMGIPCERLG VANI_VIBAN 143 0
AVVSLPVERIFRRLGLPIERLG ASAI_AERSA 142 0
AVVSLPVERIFRRLGLPIERLG AHYI_AERHY 142 0
AVTTTAMERYFVRNGVILQRLG RHLI_PSEAE 137 0
AUTOINDCRSYN7 Length of motif = 18 Motif number = 7
Autoinducer synthesis protein motif VII - 2
PCODE ST INT
QGLSEKEERVYLVFLPVD CARI_ERWCA 163 0
QGLSEKKERVYLVFLPVD O30345 163 0
QGLSEKQERIYLLHLPTD ECHI_ERWCH 163 0
QGLSEKQEKIYLLHLPTD EXPI_ERWCH 163 0
EAHITEKERIYLLHLPID O85823 163 0
EGFVSENEPIYLLRLPID EAGI_ENTAG 163 0
QGESEKNEVIYLLHLSID Q9RH44 163 0
QGESEKNEVIYLLHLSID Q9XDD0 163 0
QGMSEKHERVYLLFLPVD EXPI_ERWCA 163 0
EAFVSEKERIYLLRLPVD YUKI_YERRU 163 0
QGESEKNEVIYLLHLGID YENI_YEREN 163 0
TGCSEKNKNIYLIYMPID SWRI_SERLI 164 0
KGLSEKHQNIYLIHMPVD Q9L3I9 163 0
EAFLTEKERIYLLTLPAG ESAI_ERWST 162 0
EPTAIGNTIAIAGRLPAD O66168 167 0
EPTAIGNTIAIAGRLPAD TRAI_AGRT5 167 0
VGEAAPGEKVLLLDMPVS Q9L6U6 165 0
TGEASPGETVLLLEMPVT PSYI_PSESZ 166 0
EPVAIGNTVAVAGHLPAD TRAI_AGRT6 167 0
TGEASPGETVLLLDMPVN O85693 166 0
EIHLLGNTRSVVLSMPIN LUXJ_VIBFI 167 2
EPRPIGATVAVAGTLPAK TRAI_RHISN 167 0
EIHVLGDTKSVVLSMPIN LUXI_VIBFI 167 2
PVTVHQNEKILAIKLSAH PHZI_PSEAR 156 0
PVTVHQNEKILAIKLSAH Q9R9G9 156 0
SVIDHQNEKILAIKLSAH PHZI_PSEFL 156 0
KVHLLGSTRSVALHIPMN VANI_VIBAN 167 2
QAVDLGAVRGVGIRFHLD ASAI_AERSA 166 2
QAVDLGAVRGVGIRFHLD AHYI_AERHY 166 2
PPQKVKGETLVAISFPAY RHLI_PSEAE 159 0
User query: Display/Full Code "AUTOINDCRSYN"