WORKLIST ENTRIES (1):
ALPHAAMYLASE View alignment View Structure Alpha-amylase signature
Type of fingerprint: COMPOUND with 5 elements
Links:
PRINTS; PR00731 GLHYDRLASE1; PR00132 GLHYDRLASE2; PR00133 GLHYDRLASE3
PRINTS; PR00732 GLHYDRLASE4; PR00733 GLHYDRLASE6; PR00734 GLHYDRLASE7
PRINTS; PR00735 GLHYDRLASE8; PR00134 GLHYDRLASE10; PR00736 GLHYDRLASE15
PRINTS; PR00737 GLHYDRLASE16; PR00738 GLHYDRLASE20; PR00739 GLHYDRLASE26
PRINTS; PR00740 GLHYDRLASE27; PR00741 GLHYDRLASE29; PR00742 GLHYDRLASE35
PRINTS; PR00743 GLHYDRLASE36; PR00744 GLHYDRLASE37; PR00745 GLHYDRLASE39
PRINTS; PR00746 GLHYDRLASE41; PR00747 GLHYDRLASE48; PR00748 MELIBIASE
PRINTS; PR00137 LYSOZYME; PR00684 T4LYSOZYME; PR00749 LYSOZYMEG
PRINTS; PR00750 BETAAMYLASE
INTERPRO; IPR000461
PFAM; PF00128 alpha-amylase
PDB; 2TAA 3Dinfo
SCOP; 2TAA
CATH; 2TAA
Creation date 11-JUL-1991; UPDATE 13-JUN-1999
1. HENRISSAT, B. AND BAIROCH, A.
New families in the classification of glycosyl hydrolases based on amino
acid sequence similarities.
BIOCHEM.J. 293 781-788 (1993).
2. HENRISSAT, B.
A classification of glycosyl hydrolases based on amino acid sequence
similarities.
BIOCHEM.J. 280 309-316 (1991).
3. DAVIES, G. AND HENRISSAT, B.
Structures and mechanisms of glycosyl hydrolases.
STRUCTURE 3 853-859 (1995).
4. HENRISSAT, B. AND BAIROCH, A.
Updating the sequence-based classification of glycosyl hydrolases.
BIOCHEM.J. 316 695-696 (1996).
5. ROGERS, J.C.
Conserved amino-acid sequence domains in alpha-amylases from plants,
mammals and bacteria.
BIOCHEM.BIOPHYS.RES.COMMUN. 128 480-476 (1985).
6. LONG, C.M., VIROLLE, J-J., CHANG, S-Y., CHANG, S. AND BIBB, M.J.
Alpha-amylase gene of Streptomyces limosus: Nucleotide sequence, expression
motifs, and amino-acid sequence homology to mammalian and invertebrate
alpha-amylases.
J.BACTERIOL. 169 5745-5754 (1987).
7. MATSUURA, Y., KUSUNOKI, M., HARADA, W. AND KAKUDO, M.
Structure and possible catalytic residues of taka-amylase A.
J.BIOCHEM.(TOKYO) 95 697-702 (1984).
8. BOEL, E., BRADY, L., BRZOZOWSKI, A.M., DEREWENDA, Z., DODSON, G.G.,
JENSEN, V.J., PETERSEN, S.B., SWIFT, H., THIM, L. AND WOLDIKE, H.F.
Calcium binding in alpha-amylases: An X-ray diffraction study at 2.1
Angstroms resolution of two enzymes from Aspergillus.
BIOCHEMISTRY 29(26) 6244-6249 (1990).
O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that
hydrolyse the glycosidic bond between two or more carbohydrates, or between
a carbohydrate and a non-carbohydrate moiety. A classification system for
glycosyl hydrolases, based on sequence similarity, has led to the definition
of up to 60 different families [1-4] (http://expasy.hcuge.ch/cgi-bin/lists?
glycosid.txt). Family 57 encompases the alpha-amylases (EC 3.2.1.1).
Alpha-amylases are 1,4-alpha-D-glucan glucanohydrolases, which degrade
both the branched and unbranched forms of starch by cleaving the internal
alpha-1,4 bonds connecting the glucose monomers. The products of these
reactions are maltose and maltotriose, which are further degraded to glucose
by maltases. One atom of calcium is required to bind to each protein
molecule to allow it to function, but excess calcium can inhibit activity
by binding to amino acids that are required for the catalytic activity
of the enzyme.
ALPHAAMYLASE is a 5-element fingerprint that provides a signature for alpha-
amylase family. The fingerprint was derived from an initial alignment of 6
sequences (after J.C. Rogers [5]): the motifs were drawn from conserved
regions spanning the first two-thirds of the alignment. Three iterations
on OWL11.0 were required to reach convergence, at which point a true set
comprising 44 sequences was identified. Of these, all but 3 were alpha-
amylases: AMT4_PSEST and AMT4_PSESA are maltotetrahydrolases, which cleave
the alpha-1,4 bonds between adjacent glucose monomers of maltotetrose, and
thus perform similar roles to alpha-amylases; and AMT6_BACS7 is a glucan-1,
4-alpha-maltohexaosidase, which cleaves amylaceous polysaccharides in such
a way as to yield maltohexaose, a molecule consisting of 6 glucose monomers
joined by alpha-1,4 bonds.
Motifs 2, 3 and 5 are good discriminators for all alpha-amylases and
related proteins, such as maltases and cyclomaltodextrin glucanotrans-
ferases, which also digest alpha-1,4 bonds between connected glucose
monomers in either starch (CDGTases) or smaller molecules such as maltose
(maltases). Motifs 1 and 4 appear to discriminate between the alpha-amylases
and the subfamily of related proteins that make only partial matches.
Computer modelling studies have shown that the 5 motifs surround the active
site, suggesting that they may be required for the activity of the protein
(M.E.Beck, unpublished data). This hypothesis has been strengthened by 2
studies: the first shows that of the 18 residues thought to be required for
enzymic activity, 11 are contained within the 5 motifs [7]; the second
shows that excess calcium acts as an inhibitor by binding to some of the
residues contained in the motifs believed to have catalytic functions [8].
An update on SPTR37_9f identified a true set of 102 sequences, and 99
partial matches.
SUMMARY INFORMATION
102 codes involving 5 elements
28 codes involving 4 elements
17 codes involving 3 elements
54 codes involving 2 elements
COMPOSITE FINGERPRINT INDEX
5| 102 102 102 102 102
4| 20 28 27 9 28
3| 2 17 17 0 15
2| 1 32 51 0 24
--+--------------------------
| 1 2 3 4 5
True positives..
Q23834 O18345 Q23932 Q27923
Q27887 Q27584 Q27583 Q27582
Q24676 Q24675 Q24644 AMYA_DROYA
AMYA_DROME Q24737 AMYA_DROMA Q24643
Q24642 Q24611 Q24610 AMYP_MOUSE
O77017 O77016 O77014 O76265
O76261 O76260 Q27863 Q27611
O77018 O18344 Q24609 Q24613
Q27609 Q27610 Q27612 Q27891
O77015 O77019 O77020 O76262
O76459 O77013 O77022 O77021
O77407 O76263 O18408 AMYP_PIG
AMYS_MOUSE O76264 AMY_TENMO O77012
O77011 O76284 Q98942 O18420
AMYC_HUMAN AMYP_HUMAN AMYS_HUMAN O18552
Q26855 Q26854 Q26193 Q16924
AMY1_AEDAE O02413 O02652 P91778
AMY_ALTHA P91982 Q52413 Q17059
Q53633 AMY_STRVL AMY_STRGR AMY_STRLM
AMY_STRHY O65947 Q59964 AMY_STRTL
P97179 O86876 Q52516 AMYA_AERHY
Q56791 Q03651 AMY2_HORVU AMY1_AERHY
Q40015 AM3D_ORYSA O81699 Q40016
AMY6_HORVU AMY1_ORYSA Q42504 AMY1_HORVU
O04965 Q40017 Q52414 AM2A_ORYSA
AMC2_ORYSA O04964
Subfamily: Codes involving 4 elements
Subfamily True positives..
Q17023 AMY_THECU O24781 Q41770
AMY_BACAM O82953 O81700 AMY_BACSU
Q45516 Q45520 AMY_BACLI O82839
P71034 O31193 AMY_BACST AM3A_ORYSA
AM3E_ORYSA Q41442 O50582 Q53786
AMT4_PSESA AM3B_ORYSA AMYA_VIGMU AMY_BUTFI
Q40018 AMY3_WHEAT O06915 Q48502
Subfamily: Codes involving 3 elements
Subfamily True positives..
Q61297 AMT6_BACS7 Q59222 AMT4_PSEST
Q03657 AM3C_ORYSA O08452 O33476
Q60224 AMY2_SALTY AMY2_ECOLI AMY_ASPSH
AMYB_ASPAW AMYA_ASPOR AMYA_ASPAW Q44062
AMYM_BACST
Subfamily: Codes involving 2 elements
Subfamily True positives..
O46116 O68875 P96107 AMY1_ECOLI
Q45574 Q03658 O50200 P70983
Q45772 P96992 CDGT_BACS0 CDGT_BACS3
Q60102 CDGT_BACLI CDGT_BACCI MAL1_DROME
CDG1_PAEMA O52766 CDG2_PAEMA CDGT_BACSS
AMYR_BACS8 CDGU_BACCI AMY1_SACFI Q60051
AMY_THETU CDGT_BACSP AMYB_PAEPO Q06812
CDGT_BACST AMY_BACCI O53198 Q60027
AMY2_SCHPO Q59239 O82984 O30565
CDGT_BACS2 CDGT_BACOH YDD2_SCHPO GLGX_ECOLI
Q01117 O13296 O16099 O16098
MA1S_YEAST MA3S_YEAST MA6S_YEAST P94451
O48541 Q41386 P93416 O81638
O64454 AMY1_SCHPO
PROTEIN TITLES
Q23834 ALPHA-AMYLASE - DROSOPHILA ANANASSAE (FRUIT FLY).
O18345 ALPHA-AMYLASE - DROSOPHILA ANANASSAE (FRUIT FLY).
Q23932 ALPHA-AMYLASE - DROSOPHILA ERECTA (FRUIT FLY).
Q27923 ALPHA-AMYLASE - DROSOPHILA ERECTA (FRUIT FLY).
Q27887 ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
Q27584 ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
Q27583 ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
Q27582 ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
Q24676 ALPHA-AMYLASE - DROSOPHILA TEISSIERI (FRUIT FLY).
Q24675 ALPHA-AMYLASE - DROSOPHILA TEISSIERI (FRUIT FLY).
Q24644 ALPHA-AMYLASE - DROSOPHILA SIMULANS (FRUIT FLY).
AMYA_DROYA ALPHA-AMYLASE A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
AMYA_DROME ALPHA-AMYLASE A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
Q24737 ALPHA-AMYLASE - DROSOPHILA VIRILIS (FRUIT FLY).
AMYA_DROMA ALPHA-AMYLASE A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
Q24643 ALPHA-AMYLASE - DROSOPHILA SIMULANS (FRUIT FLY).
Q24642 ALPHA-AMYLASE - DROSOPHILA SECHELLIA (FRUIT FLY).
Q24611 ALPHA-AMYLASE - DROSOPHILA ORENA (FRUIT FLY).
Q24610 ALPHA-AMYLASE - DROSOPHILA ORENA (FRUIT FLY).
AMYP_MOUSE ALPHA-AMYLASE, PANCREATIC PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-
O77017 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA SIMULANS (FRUI
O77016 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA SIMULANS (FRUI
O77014 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA MAURITIANA (FR
O76265 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA ERECTA (FRUIT
O76261 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA SECHELLIA (FRU
O76260 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA TEISSIERI (FRU
Q27863 ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
Q27611 ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
O77018 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA TAKAHASHII.
O18344 ALPHA-AMYLASE (AMY C6) - DROSOPHILA ANANASSAE (FRUIT FLY).
Q24609 ALPHA AMYLASE - DROSOPHILA PSEUDOOBSCURA (FRUIT FLY).
Q24613 ALPHA AMYLASE - DROSOPHILA PSEUDOOBSCURA (FRUIT FLY).
Q27609 ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
Q27610 ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
Q27612 ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
Q27891 ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
O77015 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA ORENA (FRUIT F
O77019 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA BAKOUE.
O77020 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA AURARIA (FRUIT
O76262 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA LINI.
O76459 PUTATIVE AMYLASE-RELATED PROTEIN AMYREL - DROSOPHILA SERRATA
O77013 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA KIKKAWAI.
O77022 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA PUNJABIENSIS.
O77021 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA DOSSOUI.
O77407 AMYLASE - DROSOPHILA ANANASSAE (FRUIT FLY).
O76263 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA WILLISTONI (FR
O18408 AMYLASE-RELATED PROTEIN - DROSOPHILA MELANOGASTER (FRUIT FLY
AMYP_PIG ALPHA-AMYLASE, PANCREATIC (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
AMYS_MOUSE ALPHA-AMYLASE, SALIVARY AND HEPATIC PRECURSOR (EC 3.2.1.1) (
O76264 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA YAKUBA (FRUIT
AMY_TENMO ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
O77012 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA ERCEPEAE.
O77011 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA ATRIPEX.
O76284 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA BOCQUETI.
Q98942 ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1.) - GALLUS GALLUS (CHICK
O18420 AMYREL - DROSOPHILA SUBOBSCURA (FRUIT FLY).
AMYC_HUMAN ALPHA-AMYLASE 2B PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN
AMYP_HUMAN ALPHA-AMYLASE, PANCREATIC PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-
AMYS_HUMAN ALPHA-AMYLASE, SALIVARY PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-
O18552 PUTATIVE AMYLASE-RELATED PROTEIN - DROSOPHILA PSEUDOOBSCURA
Q26855 ALPHA-AMYLASE II - TRIBOLIUM CASTANEUM (RED FLOUR BEETLE).
Q26854 ALPHA-AMYLASE I - TRIBOLIUM CASTANEUM (RED FLOUR BEETLE).
Q26193 PREAMYLASE 1 PRECURSOR - PENAEUS VANNAMEI (PENOEID SHRIMP) (
Q16924 ALPHA-AMYLASE - AEDES ATROPALPUS (ROCK-POOL MOSQUITO).
AMY1_AEDAE ALPHA-AMYLASE I PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
O02413 AMYLASE - AEDES AEGYPTI (YELLOWFEVER MOSQUITO).
O02652 AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUCAN GLU
P91778 ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
AMY_ALTHA ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
P91982 C50B6.7 PROTEIN - CAENORHABDITIS ELEGANS.
Q52413 ALPHA-AMYLASE PRECURSOR - PSEUDOMONAS SP.
Q17059 ALPHA-AMYLASE - ANOPHELES MERUS (MOSQUITO).
Q53633 AMYLASE - STREPTOMYCES ALBUS.
AMY_STRVL ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
AMY_STRGR ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
AMY_STRLM ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
AMY_STRHY ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
O65947 ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
Q59964 ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
AMY_STRTL ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
P97179 ALPHA-AMYLASE - STREPTOMYCES LIVIDANS.
O86876 ALPHA-AMYLASE - STREPTOMYCES LIVIDANS.
Q52516 MALTOPENTAOSE FORMING AMYLASE PRECURSOR - PSEUDOMONAS SP.
AMYA_AERHY ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
Q56791 ALPHA-AMYLASE PRECURSOR - XANTHOMONAS CAMPESTRIS.
Q03651 ALPHA-AMYLASE TYPE B PRECURSOR - HORDEUM VULGARE (BARLEY).
AMY2_HORVU ALPHA-AMYLASE TYPE B ISOZYME PRECURSOR (EC 3.2.1.1) (1,4-ALP
AMY1_AERHY ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
Q40015 ALPHA-AMYLASE 1 - HORDEUM VULGARE (BARLEY).
AM3D_ORYSA ALPHA-AMYLASE ISOZYME 3D PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
O81699 ALPHA AMYLASE PRECURSOR (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-AL
Q40016 ALPHA-AMYLASE 1 - HORDEUM VULGARE (BARLEY).
AMY6_HORVU ALPHA-AMYLASE TYPE B ISOZYME PRECURSOR (EC 3.2.1.1) (1,4-ALP
AMY1_ORYSA ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
Q42504 ALPHA-AMYLASE TYPE A - HORDEUM VULGARE (BARLEY).
AMY1_HORVU ALPHA-AMYLASE TYPE A ISOZYME PRECURSOR (EC 3.2.1.1) (1,4-ALP
O04965 ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
Q40017 ALPHA-AMYLASE 2 - HORDEUM VULGARE (BARLEY).
Q52414 ALPHA-AMYLASE PRECURSOR - PSEUDOMONAS SP.
AM2A_ORYSA ALPHA-AMYLASE ISOZYME 2A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
AMC2_ORYSA ALPHA-AMYLASE ISOZYME C2 PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
O04964 ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
Q17023 ALPHA-AMYLASE - ANOPHELES GAMBIAE (AFRICAN MALARIA MOSQUITO)
AMY_THECU ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
O24781 ALPHA-AMYLASE PRECURSOR - BACILLUS SP.
Q41770 ALPHA-AMYLASE - ZEA MAYS (MAIZE).
AMY_BACAM ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
O82953 ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) - BACILLUS SUBTILIS.
O81700 ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
AMY_BACSU ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
Q45516 ALPHA-AMYLASE - BACILLUS SUBTILIS.
Q45520 2633 ALPHA-AMYLASE - BACILLUS SUBTILIS.
AMY_BACLI ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
O82839 AMYLASE - BACILLUS SP.
P71034 ALPHA-AMYLASE PRECURSOR - BACILLUS SP.
O31193 ALPHA AMYLASE - BACILLUS STEAROTHERMOPHILUS.
AMY_BACST ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
AM3A_ORYSA ALPHA-AMYLASE ISOZYME 3A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
AM3E_ORYSA ALPHA-AMYLASE ISOZYME 3E PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
Q41442 ALPHA-AMYLASE PRECURSOR - SOLANUM TUBEROSUM (POTATO).
O50582 ALPHA-AMYLASE PRECURSOR - STREPTOCOCCUS BOVIS.
Q53786 INTRACELLULAR ALPHA-AMYLASE (EC 3.2.1.1) - STREPTOCOCCUS BOV
AMT4_PSESA GLUCAN 1,4-ALPHA-MALTOTETRAHYDROLASE PRECURSOR (EC 3.2.1.60)
AM3B_ORYSA ALPHA-AMYLASE ISOZYME 3B PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
AMYA_VIGMU ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
AMY_BUTFI ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
Q40018 ALPHA-AMYLASE 2 - HORDEUM VULGARE (BARLEY).
AMY3_WHEAT ALPHA-AMYLASE AMY3 PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCA
O06915 ALPHA-AMYLASE - LACTOBACILLUS PLANTARUM.
Q48502 ALPHA-AMYLASE - LACTOBACILLUS AMYLOVORUS.
Q61297 PANCREATIC ALPHA AMYLASE ISOZYME - MUS MUSCULUS (MOUSE).
AMT6_BACS7 GLUCAN 1,4-ALPHA-MALTOHEXAOSIDASE PRECURSOR (EC 3.2.1.98) (G
Q59222 ALPHA-AMYLASE (EC 3.2.2.1) (PURINE NUCLEOSIDASE) - BACILLUS
AMT4_PSEST GLUCAN 1,4-ALPHA-MALTOTETRAHYDROLASE PRECURSOR (EC 3.2.1.60)
Q03657 AMYLASE (EC 3.2.1.-) - BACILLUS CIRCULANS.
AM3C_ORYSA ALPHA-AMYLASE ISOZYME 3C PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D
O08452 ALPHA AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUC
O33476 ALPHA-AMYLASE PRECURSOR - PYROCOCCUS SP.
Q60224 ALPHA-AMYLASE PRECURSOR - NATRONOCOCCUS SP.
AMY2_SALTY CYTOPLASMIC ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
AMY2_ECOLI CYTOPLASMIC ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
AMY_ASPSH ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
AMYB_ASPAW ALPHA-AMYLASE B PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
AMYA_ASPOR ALPHA-AMYLASE A PRECURSOR (EC 3.2.1.1) (TAKA-AMYLASE A) (TAA
AMYA_ASPAW ALPHA-AMYLASE A PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN G
Q44062 AMYLASE - AEROMONAS HYDROPHILA.
AMYM_BACST MALTOGENIC ALPHA-AMYLASE PRECURSOR (EC 3.2.1.133) (GLUCAN 1,
O46116 ALPHA AMYLASE - DROSOPHILA PSEUDOOBSCURA (FRUIT FLY).
O68875 INTRACELLULAR A-AMYLASE - STREPTOCOCCUS MUTANS.
P96107 ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
AMY1_ECOLI ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
Q45574 H-167 G6-AMYLASE GENE PRECURSOR - BACILLUS SP.
Q03658 EXO-MALTOPENTAOHYDROLASE PRECURSOR (EC 3.2.1.-) (AMYLASE) -
O50200 AMYLASE (EC 3.2.1.1) (ALPHA-AMYLASE) (1,4-ALPHA-D-GLUCAN GLU
P70983 ALKALINE AMYLOPULLULANASE - BACILLUS SP.
Q45772 OUTER MEMBRANE PROTEIN - BACTEROIDES THETAIOTAOMICRON.
P96992 AMLC PROTEIN - STREPTOMYCES LIVIDANS.
CDGT_BACS0 CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
CDGT_BACS3 CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
Q60102 PERIPLASMIC ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) - XANTHOMON
CDGT_BACLI CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
CDGT_BACCI CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
MAL1_DROME POSSIBLE MALTASE D PRECURSOR (EC 3.2.1.20) (LARVAL VISCERAL
CDG1_PAEMA CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
O52766 ALPHA-CYCLODEXTRIN GLUCANOTRANSFERASE (EC 2.4.1.19) (CYCLOMA
CDG2_PAEMA CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
CDGT_BACSS CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
AMYR_BACS8 RAW-STARCH-DIGESTING AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALP
CDGU_BACCI CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
AMY1_SACFI ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) - SACCHAROMYCOPSIS FIBU
Q60051 ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
AMY_THETU ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
CDGT_BACSP CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
AMYB_PAEPO BETA/ALPHA-AMYLASE PRECURSOR [INCLUDES: BETA-AMYLASE (EC 3.2
Q06812 ALPHA-AMYLASE (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLUCANOHYDROL
CDGT_BACST CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
AMY_BACCI ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
O53198 MALTASE - MYCOBACTERIUM TUBERCULOSIS.
Q60027 ALPHA-GLUCOSIDASE (EC 3.2.1.20) (MALTASE) (GLUCOINVERTASE) (
AMY2_SCHPO PROBABLE ALPHA-AMYLASE C4A8.01 PRECURSOR (EC 3.2.1.1) (1,4-A
Q59239 CYCLODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19) (CYC
O82984 CYCLOMALTODEXTRIN GLUCANOTRANSFERASE - BACILLUS SP.
O30565 CYCLODEXTRIN GLYCOSYLTRANSFERASE (EC 2.4.1.19) (CYCLOMALTODE
CDGT_BACS2 CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
CDGT_BACOH CYCLOMALTODEXTRIN GLUCANOTRANSFERASE PRECURSOR (EC 2.4.1.19)
YDD2_SCHPO HYPOTHETICAL 55.4 KD PROTEIN C1B9.02C IN CHROMOSOME I - SCHI
GLGX_ECOLI GLYCOGEN OPERON PROTEIN GLGX (EC 3.2.1.-) - ESCHERICHIA COLI
Q01117 ALPHA-AMYLASE PRECURSOR (EC 3.2.1.1) (1,4-ALPHA-D-GLUCAN GLU
O13296 ACID-STABLE ALPHA-AMYLASE - ASPERGILLUS KAWACHII.
O16099 MALTASE 2 - DROSOPHILA VIRILIS (FRUIT FLY).
O16098 MALTASE 1 - DROSOPHILA VIRILIS (FRUIT FLY).
MA1S_YEAST ALPHA-GLUCOSIDASE MAL1S (EC 3.2.1.20) (MALTASE) - SACCHAROMY
MA3S_YEAST ALPHA-GLUCOSIDASE MAL3S (EC 3.2.1.20) (MALTASE) - SACCHAROMY
MA6S_YEAST ALPHA-GLUCOSIDASE MAL6S (EC 3.2.1.20) (MALTASE) - SACCHAROMY
P94451 EXO-ALPHA-1, 4-GLUCOSIDASE - BACILLUS STEAROTHERMOPHILUS.
O48541 LIMIT DEXTRINASE - HORDEUM VULGARE (BARLEY).
Q41386 PULLULANASE - SPINACIA OLERACEA (SPINACH).
P93416 STARCH DEBRANCHING ENZYME PRECURSOR - ORYZA SATIVA (RICE).
O81638 PULLULANASE-TYPE STARCH DEBRANCHING ENZYME - ZEA MAYS (MAIZE
O64454 STARCH DEBRANCHING ENZYME - ORYZA SATIVA (RICE).
AMY1_SCHPO PROBABLE ALPHA-AMYLASE C23D3.14C PRECURSOR (EC 3.2.1.1) (1,4
SCAN HISTORY
OWL11_0 3 150 NSINGLE
OWL17_1 1 200 NSINGLE
OWL18_0 1 200 NSINGLE
OWL19_1 1 275 NSINGLE
OWL26_0 1 400 NSINGLE
SPTR37_9f 2 250 NSINGLE
INITIAL MOTIF SETS
ALPHAAMYLASE1 Length of motif = 18 Motif number = 1
Alpha-amylase motif I - 1
PCODE ST INT
WWERYQPISYKICSRSGN ALMSS 73 73
WWERYQPVSYKLCTRSGN ALPGP 58 58
WYWLYQPTSYQIGNRYLG ALBS 99 99
WYNMMMGKVDDIAAAGVT ALBH 43 43
WYNFLMGKVDDIAAAGIT ALBHB 42 42
YFEWYTPNDGQHWKRLQN ALBSN 39 39
ALPHAAMYLASE2 Length of motif = 12 Motif number = 2
Alpha-amylase motif II - 1
PCODE ST INT
GVRIYVDAVINH ALMSS 105 14
GVRIYVDAVINH ALPGP 90 14
GIKVIVDAVINH ALBS 132 15
GVQAIADIVINH ALBH 106 45
GVKAIADIVINH ALBHB 105 45
NVQVYGDVVLNH ALBSN 123 66
ALPHAAMYLASE3 Length of motif = 12 Motif number = 3
Alpha-amylase motif III - 1
PCODE ST INT
VAGFRLDASKHM ALMSS 206 89
VAGFRLDASKHM ALPGP 191 89
ADGFRFDAAKHI ALBS 211 67
FDAWRLDFARGY ALBH 198 80
LDGWRFDFAKGY ALBHB 197 80
LDGFRIDAAKHI ALBSN 256 121
ALPHAAMYLASE4 Length of motif = 19 Motif number = 4
Alpha-amylase motif IV - 1
PCODE ST INT
FIFQEVIDLGGEAVSSNEY ALMSS 244 26
FIFQEVIDLGGEAIKSGEY ALPGP 229 26
FQYGEILQDSASRDAAYAN ALBS 245 22
LAVAEVWDNMATGGDGKPN ALBH 225 15
FAVAEIWTSLAYGGDGKPN ALBHB 224 15
FTVAEYWQNNAGKLENYLN ALBSN 288 20
ALPHAAMYLASE5 Length of motif = 13 Motif number = 5
Alpha-amylase motif V - 1
PCODE ST INT
DRALVFVDNHDNQ ALMSS 305 42
DRALVFVDNHDNQ ALPGP 290 42
DKLVTWVESHDTY ALBS 300 36
AKAATFVDNHDTG ALBH 305 61
AKAVTFVDNHDTG ALBHB 303 60
EKAVTFVENHDTQ ALBSN 349 42
FINAL MOTIF SETS
ALPHAAMYLASE1 Length of motif = 18 Motif number = 1
Alpha-amylase motif I - 2
PCODE ST INT
WWERYQPISYKLVTRSGN Q23834 75 75
WWERYQPISYKLVTRSGN O18345 74 74
WWERYQPISYKLDTRSGN Q23932 74 74
WWERYQPISYKLDTRSGN Q27923 74 74
WWERYQPISYKLETRSGN Q27887 74 74
WWERYQPISYKLETRSGN Q27584 74 74
WWERYQPISYKLETRSGN Q27583 74 74
WWERYQPISYKLETRSGN Q27582 74 74
WWERYQPISYKLETRSGN Q24676 74 74
WWERYQPISYKLETRSGN Q24675 74 74
WWERYQPISYKLETRSGN Q24644 74 74
WWERYQPISYKLETRSGN AMYA_DROYA 74 74
WWERYQPISYKLETRSGN AMYA_DROME 74 74
WWERYQPISYKLNTRSGN Q24737 74 74
WWERYQPISYKLETRSGN AMYA_DROMA 74 74
WWERYQPISYKLETRSGN Q24643 74 74
WWERYQPISYKLETRSGN Q24642 74 74
WWERYQPISYKLVTRSGN Q24611 74 74
WWERYQPISYKLVTRSGN Q24610 74 74
WWERYQPISYKICTRSGN AMYP_MOUSE 73 73
WWERYQPISYKLTTRSGN O77017 75 75
WWERYQPISYKLTTRSGN O77016 75 75
WWERYQPISYKLTTRSGN O77014 75 75
WWERYQPISYKLTTRSGN O76265 75 75
WWERYQPISYKLTTRSGN O76261 75 75
WWERYQPISYKLTTRSGN O76260 75 75
WWERYQPISYKLTTRSGN Q27863 74 74
WWERYQPISYKLTTRSGN Q27611 74 74
WWERYQPISYKLTTRSGN O77018 75 75
WWERYQPISYKLITRSGN O18344 75 75
WWERYQPISYKLTTRSGN Q24609 74 74
WWERYQPISYKLTTRSGN Q24613 74 74
WWERYQPISYKLTTRSGN Q27609 74 74
WWERYQPISYKLTTRSGN Q27610 74 74
WWERYQPISYKLTTRSGN Q27612 74 74
WWERYQPISYKLTTRSGN Q27891 74 74
WWERYQPISYRLTTRSGN O77015 75 75
WWERYQPISYKLTTRSGN O77019 76 76
WWERYQPISYKLTTRSGN O77020 76 76
WWERYQPISYKLTTRSGN O76262 76 76
WWERYQPISYKLTTRSGN O76459 76 76
WWERYQPISYKLTTRSGN O77013 76 76
WWERYQPISYKLTTRSGN O77022 76 76
WWERYQPISYKLTTRSGN O77021 76 76
WWERYQPISYQLMTRSGN O77407 74 74
WWERYQPISYKLVTRSGN O76263 74 74
WWERYQPISYKLTTRSGN O18408 75 75
WWERYQPVSYKLCTRSGN AMYP_PIG 58 58
WWERYQPISYKICSRSGN AMYS_MOUSE 73 73
RWERYQPISYKLTSRSGN O76264 75 75
WWERYQPVSYIINTRSGD AMY_TENMO 56 56
WWERYQPISYKLTTRSGD O77012 76 76
WWERYQPISYKLVTRSGN O77011 76 76
WWERYQPISYKLTTRSGN O76284 76 76
WWERYQPISYKICSRSGN Q98942 73 73
WWERYQPISYKLITRSGD O18420 76 76
WWERYQPVSYKLCTRSGN AMYC_HUMAN 73 73
WWERYQPVSYKLCTRSGN AMYP_HUMAN 73 73
WWERYQPVSYKLCTRSGN AMYS_HUMAN 73 73
WWERYQPISYKLITRSGN O18552 76 76
WWERYQPVSYILNTRSGD Q26855 75 75
WWERYQPVSYILNTRSGD Q26854 75 75
WWERYQPVSYKLVTRSGD Q26193 76 76
WWERYQPASYHLNTRSGS Q16924 74 74
WWERYQPISFEIKSRSGN AMY1_AEDAE 314 314
WWERYQPISFEIKSRSGN O02413 314 314
WWERYQPASYHLNTRSGS O02652 74 74
WWERYQPVSYKLQTRSGS P91778 74 74
WWTRYQPVSYELQSRGGN AMY_ALTHA 70 70
WWVRYQPVSYKLDSRSGN P91982 80 80
WWSRYQPVSYAFEGRSGN Q52413 74 74
WWERYQPISFKLDTRSGS Q17059 82 82
WWTSYQPVSYKIAGRLGD Q53633 79 79
WWTSYQPVSYKIAGRLGD AMY_STRVL 78 78
WWTSYQPVSYKIAGRLGD AMY_STRGR 78 78
WWTSYQPVSYKIAGRLGD AMY_STRLM 78 78
WWTSYQPVSYKIAGRLGD AMY_STRHY 80 80
WWTSYQPVSYKIAGPVGD O65947 73 73
WWTSYQPVSYRIAGRLGD Q59964 81 81
WWTSYQPVSYKIAGRLGD AMY_STRTL 79 79
WWTSYQPVSYRIAGRLGD P97179 85 85
WWTSYQPVSYRIAGRLGD O86876 85 85
WWMRYQPVSYSLDRSRSG Q52516 82 82
WWTVYQPVSYKNFNSFGG AMYA_AERHY 70 70
WWARYQPQDIRLIDNPLG Q56791 77 77
WYNFLMGKVDDIAAAGVT Q03651 42 42
WYNFLMGKVDDIAAAGIT AMY2_HORVU 42 42
WWARYQPQDLRLVDSPLG AMY1_AERHY 63 63
WYNFLMGKVDDIAAAGIT Q40015 42 42
WYNMLKGQVDDIAKAGVT AM3D_ORYSA 43 43
WYNMMMGKVDDIAAAGVT O81699 42 42
WYNFLMGKVDDIAAAGIT Q40016 42 42
WYNFLMGKVDDIAAAGVT AMY6_HORVU 42 42
WYNFLMGKVDDIAAAGIT AMY1_ORYSA 43 43
WYNMMMGKVDDIAAAGVT Q42504 42 42
WYNMMMGKVDDIAAAGVT AMY1_HORVU 43 43
WYNMMMGKVDDIAAAGVT O04965 42 42
WYNMMMGKVDDIAAVGVT Q40017 43 43
WWARHQPQDLRVIDSPIG Q52414 65 65
WYNLLMGKVDDIVAAGVT AM2A_ORYSA 40 40
WYNLLMGKVDDIVAAGVT AMC2_ORYSA 40 40
WYNMMLGKVDDIAAAGVT O04964 42 42
ALPHAAMYLASE2 Length of motif = 12 Motif number = 2
Alpha-amylase motif II - 2
PCODE ST INT
GVRIYVDVVFNH Q23834 107 14
GVRIYVDVVFNH O18345 106 14
GVRIYVDVVFNH Q23932 106 14
GVRIYVDVVFNH Q27923 106 14
GVRTYVDVVFNH Q27887 106 14
GVRTYVDVVFNH Q27584 106 14
GVRTYVDVVFNH Q27583 106 14
GVRTYVDVVFNH Q27582 106 14
GVRTYVDVVFNH Q24676 106 14
GVRTYVDVVFNH Q24675 106 14
GVRTYVDVVFNH Q24644 106 14
GVRTYVDVVFNH AMYA_DROYA 106 14
GVRTYVDVVFNH AMYA_DROME 106 14
GVRTYVDVVFNH Q24737 106 14
GVRIYVDVIFNH AMYA_DROMA 106 14
GVRIYVDVIFNH Q24643 106 14
GVRIYVDVIFNH Q24642 106 14
GVRIYVDVIFNH Q24611 106 14
GVRIYVDVIFNH Q24610 106 14
GVRIYVDAVINH AMYP_MOUSE 105 14
GVRIYVDVLLNH O77017 107 14
GVRIYVDVLLNH O77016 107 14
GVRIYVDVLLNH O77014 107 14
GVRIYVDVLLNH O76265 107 14
GVRIYVDVLLNH O76261 107 14
GVRIYVDVLLNH O76260 107 14
GVRTYVDVIFNH Q27863 106 14
GVRTYVDVIFNH Q27611 106 14
GVRIYVDVLLNH O77018 107 14
GVRIYVDVLLNH O18344 107 14
GVRTYVDVIFNH Q24609 106 14
GVRTYVDVIFNH Q24613 106 14
GVRTYVDVIFNH Q27609 106 14
GVRTYVDVIFNH Q27610 106 14
GVRTYVDVIFNH Q27612 106 14
GVRTYVDVIFNH Q27891 106 14
GVRIYVDVLLNH O77015 107 14
GIRIYVDVLLNH O77019 108 14
GIRIYVDVLLNH O77020 108 14
GIRIYVDVLLNH O76262 108 14
GIRIYVDVLLNH O76459 108 14
GIRIYVDVLLNH O77013 108 14
GIRIYVDVLLNH O77022 108 14
GIRIYVDVLLNH O77021 108 14
GVRIYVDVVFNH O77407 106 14
GVRIYVDVLLNH O76263 106 14
GVRIYVDVLLNH O18408 107 14
GVRIYVDAVINH AMYP_PIG 90 14
GVRIYVDAVINH AMYS_MOUSE 105 14
GVRIYVDVLLNH O76264 107 14
GVRIYVDAVINH AMY_TENMO 88 14
GIRIYVDVLLNH O77012 108 14
GIRIYVDVLLNH O77011 108 14
GIRIYGDVLLNH O76284 108 14
GVRIYVDAVVNH Q98942 105 14
GVRIYVDVLLNH O18420 108 14
GVRIYVDAVINH AMYC_HUMAN 105 14
GVRIYVDAVINH AMYP_HUMAN 105 14
GVRIYVDAVINH AMYS_HUMAN 105 14
GVRIYVDVLLNH O18552 108 14
GVRIYVDTVINH Q26855 107 14
GVRIYVDTVINH Q26854 107 14
GVRIYVDAVINH Q26193 108 14
GVRIYVDIVINH Q16924 106 14
GVRIYVDVVVNH AMY1_AEDAE 346 14
GVRIYVDVVVNH O02413 346 14
GVRIYVDIVINH O02652 106 14
NVRIYSDTVINH P91778 106 14
GVDIYVDTLINH AMY_ALTHA 102 14
GVRIIVDIVMNH P91982 112 14
GVDIYVDAVINH Q52413 106 14
GVRLYVDIIINH Q17059 114 14
GVKVVVDTVINH Q53633 111 14
GVKVVADSVINH AMY_STRVL 110 14
GVKVVADSVINH AMY_STRGR 110 14
GVKVVADSVINH AMY_STRLM 110 14
GVKVIADAVVNH AMY_STRHY 112 14
GVKVVADTVINH O65947 105 14
GVKVVADAVINH Q59964 113 14
GVKVVVDTVINH AMY_STRTL 111 14
GVKVVADSVVNH P97179 117 14
GVKVVADSVVNH O86876 117 14
GVGIYVDAVINH Q52516 115 15
GVKVYADAVFNH AMYA_AERHY 103 15
GVETYADVVFNH Q56791 110 15
GVKAIADIVINH Q03651 105 45
GVKAIADIVINH AMY2_HORVU 105 45
GIAVYADVVLNH AMY1_AERHY 96 15
GVKAIADIVINH Q40015 105 45
GVQCVADVVINH AM3D_ORYSA 106 45
GVHVIADIVINH O81699 105 45
AVKAIADIVINH Q40016 105 45
AVKAIADIVINH AMY6_HORVU 105 45
GVQVIADIVINH AMY1_ORYSA 106 45
GVQAIADIVINH Q42504 105 45
GVQAIADIVINH AMY1_HORVU 106 45
GVQAITDIVINH O04965 105 45
GVQAIADIVINH Q40017 106 45
GVGVYADVVLNH Q52414 98 15
GIQAIADVVINH AM2A_ORYSA 103 45
GIQAIADVVINH AMC2_ORYSA 103 45
GVQAIADIVINH O04964 105 45
ALPHAAMYLASE3 Length of motif = 12 Motif number = 3
Alpha-amylase motif III - 2
PCODE ST INT
VAGFRVDAAKHM Q23834 199 80
VAGFRVDAAKHM O18345 198 80
VAGFRVDAAKHM Q23932 198 80
VAGFRVDAAKHM Q27923 198 80
VAGFRVDAAKHM Q27887 198 80
VAGFRVDAAKHM Q27584 198 80
VAGFRVDAAKHM Q27583 198 80
VAGFRVDAAKHM Q27582 198 80
VAGFRVDAAKHM Q24676 198 80
VAGFRVDAAKHM Q24675 198 80
VAGFRVDAAKHM Q24644 198 80
VAGFRVDAAKHM AMYA_DROYA 198 80
VAGFRVDAAKHM AMYA_DROME 198 80
VAGFRVDAAKHM Q24737 198 80
VAGFRVDAAKHM AMYA_DROMA 198 80
VAGFRVDAAKHM Q24643 198 80
VAGFRVDAAKHM Q24642 198 80
VAGFRVDAAKHM Q24611 198 80
VAGFRVDAAKHM Q24610 198 80
VAGFRLDAAKHM AMYP_MOUSE 203 86
VAGFRVDAAKHM O77017 201 82
VAGFRVDAAKHM O77016 201 82
VAGFRVDAAKHM O77014 201 82
VAGFRVDAAKHM O76265 201 82
VAGFRVDAAKHM O76261 201 82
VAGFRVDAAKHM O76260 201 82
VAGFRVDAAKHM Q27863 198 80
VAGFRVDAAKHM Q27611 198 80
VAGFRVDAAKHM O77018 201 82
VAGFRVDAAKHM O18344 201 82
VAGFRVDAAKHM Q24609 198 80
VAGFRVDAAKHM Q24613 198 80
VAGFRVDAAKHM Q27609 198 80
VAGFRVDAAKHM Q27610 198 80
VAGFRVDAAKHM Q27612 198 80
VAGFRVDAAKHM Q27891 198 80
VAGFRVDAAKHM O77015 201 82
VAGFRVDAAKHM O77019 202 82
VAGFRVDAAKHM O77020 202 82
VAGFRVDAAKHM O76262 202 82
VAGFRVDAAKHM O76459 202 82
VAGFRVDAAKHM O77013 202 82
VAGFRVDAAKHM O77022 202 82
VAGFRVDAAKHM O77021 202 82
VAGFRVDAAKHM O77407 198 80
VAGFRVDAAKHM O76263 200 82
VAGFRVDAAKHM O18408 201 82
VAGFRIDASKHM AMYP_PIG 191 89
VAGFRLDASKHM AMYS_MOUSE 206 89
VAGFRVDAAKHM O76264 201 82
VAGFRVDAAKHM AMY_TENMO 179 79
VAGFRVDAAKHM O77012 202 82
VAGFRVDAAKHM O77011 202 82
VAGFRVDAAKHM O76284 202 82
VAGFRIDAAKHM Q98942 206 89
VAGFRVDAAKHM O18420 202 82
VAGFRLDASKHM AMYC_HUMAN 206 89
VAGFRLDASKHM AMYP_HUMAN 206 89
VAGFRIDASKHM AMYS_HUMAN 206 89
VAGFRVDAAKHM O18552 202 82
VAGFRVDAAKHM Q26855 198 79
VAGFRVDAAKHM Q26854 198 79
VAGFRIDASKHM Q26193 208 88
VAGFRVDAVKHM Q16924 195 77
VAGFRMDACKHM AMY1_AEDAE 441 83
VAGFRMDACKHM O02413 441 83
IAGFRVDAVKHM O02652 195 77
VAGFRIDAAKHM P91778 206 88
VKGFRFDASKHV AMY_ALTHA 192 78
VAGFRHDASKHM P91982 217 93
VAGFRIDAAKHM Q52413 184 66
VAGFRVDAAKHM Q17059 209 83
VDGFRIDAAKHI Q53633 200 77
VDGFRIDAAKHM AMY_STRVL 199 77
VDGFRIDAAKHM AMY_STRGR 199 77
VDGFRIDAAKHM AMY_STRLM 199 77
VDGFRIDAAKHI AMY_STRHY 198 74
VDGFRIDAAKHI O65947 194 77
VDGFRIDAAKHM Q59964 202 77
VDGFRIDAATHI AMY_STRTL 200 77
VDGFRIDAAKHM P97179 206 77
VDGFRIDAAKHM O86876 206 77
VKGLRVDAAKHI Q52516 205 78
VAGFRIDAAKHM AMYA_AERHY 192 77
VTGFRVDAAKHM Q56791 223 101
FDGWRFDFAKGY Q03651 197 80
FDGWRFDFAKGY AMY2_HORVU 197 80
IKGFRVDAVKHM AMY1_AERHY 209 101
LDGWRFDFAKGY Q40015 197 80
FDGWRLDFAKGY AM3D_ORYSA 197 79
FDAWRLDFAKGY O81699 197 80
FDGWRFDFAKGY Q40016 199 82
FDGWRFDFAKGY AMY6_HORVU 199 82
FDAWRLDFAKGY AMY1_ORYSA 197 79
FDAWRLDFARGY Q42504 197 80
FDAWRLDFARGY AMY1_HORVU 198 80
FDAWRLDFARGY O04965 197 80
FDAWRLDFARGY Q40017 198 80
ISGFRIDAVKHM Q52414 211 101
FDAWRLDFARGY AM2A_ORYSA 196 81
FDAWRLDFARGY AMC2_ORYSA 196 81
FDAWRLDFARGY O04964 197 80
ALPHAAMYLASE4 Length of motif = 19 Motif number = 4
Alpha-amylase motif IV - 2
PCODE ST INT
YIVQEVIDMGGEAISKSEY Q23834 238 27
YIVQEVIDMGGEAISKSEY O18345 237 27
YIVQEVIDMGGEAISKSEY Q23932 237 27
YIVQEVIDMGGEAISKSEY Q27923 237 27
YIVQEVIDMGGEAISKSEY Q27887 237 27
YIVQEVIDMGGEAISKSEY Q27584 237 27
YIVQEVIDMGGEAISKSEY Q27583 237 27
YIVQEVIDMGGEAISKSEY Q27582 237 27
YIVQEVIDMGGEAISKSEY Q24676 237 27
YIVQEVIDMGGEAISKSEY Q24675 237 27
YIVQEVIDMGGEAISKSEY Q24644 237 27
YIVQEVIDMGGEAISKSEY AMYA_DROYA 237 27
YIVQEVIDMGGEAISKSEY AMYA_DROME 237 27
YIFQEVIDLGGEAISKSEY Q24737 237 27
YIVQEVIDMGGEAISKSEY AMYA_DROMA 237 27
YIVQEVIDMGGEAISKSEY Q24643 237 27
YIVQEVIDMGGEAISKSEY Q24642 237 27
YIVQEVIDMGGEAISKSEY Q24611 237 27
YIVQEVIDMGGEAISKSEY Q24610 237 27
FIFQEVIDLGGEAIKGSEY AMYP_MOUSE 241 26
FIFQEVIDHGHETVSRDEY O77017 240 27
FIFQEVIDHGHETVSRDEY O77016 240 27
FIFQEVIDHGHETVSRDEY O77014 240 27
FIFQEVIDHGHETVSRDEY O76265 240 27
FIFQEVIDHGHETVSRDEY O76261 240 27
FIFQEVIDHGHETVSRDEY O76260 240 27
YIVQEVIDMGGEAISKSEY Q27863 237 27
YIVQEVIDMGGEAISKSEY Q27611 237 27
FIFQEVIDHGHETVSRDEY O77018 240 27
FIFQEVIDHGHETVSREEY O18344 240 27
YIVQEVIDMGGEAISKTEY Q24609 237 27
YIVQEVIDMGGEAISKTEY Q24613 237 27
YIVQEVIDMGGEAISKTEY Q27609 237 27
YIVQEVIDMGGEAISKTEY Q27610 237 27
YIVQEVIDMGGEAISKTEY Q27612 237 27
YIVQEVIDMGGEAISKTEY Q27891 237 27
FIFQEVIDHGHETVSRDEY O77015 240 27
FIFQEVIDHGHETVSREEY O77019 241 27
FIFQEVIDHGHETVSREEY O77020 241 27
FIFQEVIDHGHETVSREEY O76262 241 27
FIFQEVIDHGHETVSREEY O76459 241 27
FIFQEVIDHGHETVSREEY O77013 241 27
FIFQEVIDHGHETVSREEY O77022 241 27
FIFQEVIDHGHETVSRDEY O77021 241 27
FIIQEVIDMGGEAISKFEY O77407 237 27
FIYQEVIDHGHETVTREEY O76263 239 27
FIFQEVIDHGHETDSRDEY O18408 240 27
FIFQEVIDLGGEAIQSSEY AMYP_PIG 229 26
FIFQEVIDLGGEAVSSNEY AMYS_MOUSE 244 26
FIFQEVIDHGHETVSRDEY O76264 240 27
FIYQEVIDLGGEAISKNEY AMY_TENMO 218 27
FIFQEVIDHGHETVSRDEY O77012 241 27
FIFQEVIDHGHETVSREEY O77011 241 27
FIFQEVIDHGHETVSREEY O76284 241 27
FIYQEVIDLGGEPITGSQY Q98942 244 26
FIFQEVIDHGGQEVTREEY O18420 241 27
FIYQEVIDLGGEPIKSSDY AMYC_HUMAN 244 26
FIYQEVIDLGGEPIKSSDY AMYP_HUMAN 244 26
FIYQEVIDLGGEPIKSSDY AMYS_HUMAN 244 26
FIFQEVIDHGGQEVTREEY O18552 241 27
FIFQEVIDLGGEAISKHEY Q26855 237 27
FIFQEVIDLGGEAISKHEY Q26854 237 27
FIFQEVIDLGGEAISSGEY Q26193 246 26
FITQEVIDLGGEAITKYEY Q16924 234 27
FIFQEVIDLGTEGVSAKEY AMY1_AEDAE 480 27
FIFQEVIDLGTEGVSAKEY O02413 480 27
FITQEVIDLGGEAISKYEY O02652 234 27
FIFQEVIDMGGEPISASEY P91778 244 26
VVFQEVIDQGGEAVGASEY AMY_ALTHA 220 16
FAVHEVIDRGGEAVKCGDY P91982 255 26
YIFQEVIGAENEPVKPAEY Q52413 212 16
FLAQEVIDMGAHEVVRKFE Q17059 248 27
YWKQEVIYGAGEAVQPGEY Q53633 229 17
FWKLEAIHGAGEAVSPSEY AMY_STRVL 228 17
YWKQEAIHGAGEAVQPSEY AMY_STRGR 228 17
YWKQEAIHGAGEAVQPSEY AMY_STRLM 228 17
FWVQEVIYGAGEAVRPDEY AMY_STRHY 226 16
YWKQEVIYGAGEAVQPTEY O65947 223 17
SGSPEVIQGGGEAVQPEEY Q59964 230 16
YWKQEVIYGAGEPPKPGEY AMY_STRTL 229 17
YWKHEAIYGAGEAVSPTEY P97179 235 17
YWKHEAIYGSGEAVSPTEY O86876 235 17
FWFLEVIGAPGEAVQPSQY Q52516 238 21
RAYLEVIGAGGESPDIQPG AMYA_AERHY 219 15
YVFGEVITGGGSGNGDYDQ Q56791 252 17
FAVAEIWTSLAYGGDGKPN Q03651 224 15
FAVAEIWTSLAYGGDGKPN AMY2_HORVU 224 15
HVFGEVITTGGAGSTDYER AMY1_AERHY 238 17
FAVAEIWTSLAYGGDGKPN Q40015 224 15
FVVAEIWNSLSYNGDGKPA AM3D_ORYSA 224 15
LAVAEVWDTMQTGGDGKPE O81699 224 15
FAVAEIWTSLAYGGDGKPN Q40016 226 15
FAVAEIWTSLAYGGDGKPN AMY6_HORVU 226 15
FAVAEIWTSMANGGDGKPN AMY1_ORYSA 224 15
LAVAEVWDNMATGGDGKPN Q42504 224 15
LAVAEVWDNMATGGDGKPN AMY1_HORVU 225 15
LAVAEVWDNMATGGDGKPN O04965 224 15
LAVAEVWDNMATGGDGKPN Q40017 225 15
HVFGEVITSGGLGDATYDA Q52414 240 17
LAVAELWDSMAYGGDGKPE AM2A_ORYSA 224 16
LAVAELWDSMAYGGDGKPE AMC2_ORYSA 224 16
LAVAEIWDGMVPGGDGKPN O04964 224 15
ALPHAAMYLASE5 Length of motif = 13 Motif number = 5
Alpha-amylase motif V - 2
PCODE ST INT
DRSLVFVDNHDNQ Q23834 297 40
DRSLVFVDNHDNQ O18345 296 40
DRSLVFVDNHDNQ Q23932 296 40
DRSLVFVDNHDNQ Q27923 296 40
DRSLVFVDNHDNQ Q27887 296 40
DRSLVFVDNHDNQ Q27584 296 40
DRSLVFVDNHDNQ Q27583 296 40
DRSLVFVDNHDNQ Q27582 296 40
DRSLVFVDNHDNQ Q24676 296 40
DRSLVFVDNHDNQ Q24675 296 40
DRSLVFVDNHDNQ Q24644 296 40
DRSLVFVDNHDNQ AMYA_DROYA 296 40
DRSLVFVDNHDNQ AMYA_DROME 296 40
DRSLVFVDNHDNQ Q24737 296 40
DRSLVFVDNHDNQ AMYA_DROMA 296 40
DRSLVFVDNHDNQ Q24643 296 40
DRSLVFVDNHDNQ Q24642 296 40
DRSLVFVDNHDNQ Q24611 296 40
DRSLVFVDNHDNQ Q24610 296 40
DRALVFVDNHDNQ AMYP_MOUSE 302 42
GQALTFVDNHDNQ O77017 299 40
GQALTFVDNHDNQ O77016 299 40
GQALTFVDNHDNQ O77014 299 40
GQALTFVDNHDNQ O76265 299 40
GQALTFVDNHDNQ O76261 299 40
GQALTFVDNHDNQ O76260 299 40
DRSLVFVDNHDNQ Q27863 296 40
DRSLVFVDNHDNQ Q27611 296 40
TQALTFVDNHDNQ O77018 299 40
GQALTFVDNHDNQ O18344 299 40
DRSLVFVDNHDNQ Q24609 296 40
DRSLVFVDNHDNQ Q24613 296 40
DRSLVFVDNHDNQ Q27609 296 40
DRSLVFVDNHDNQ Q27610 296 40
DRSLVFVDNHDNQ Q27612 296 40
DRSLVFVDNHDNQ Q27891 296 40
GQALTFVDNHDNQ O77015 299 40
DQALTFVDNHDNQ O77019 300 40
DQALTFVDNHDNQ O77020 300 40
EQALTFVDNHDNQ O76262 300 40
EQALTFVDNHDNQ O76459 300 40
EQALTFVDNHDNQ O77013 300 40
EQALTFVDNHDNQ O77022 300 40
EQALTFVDNHDNQ O77021 300 40
NCSLVFVDNHDNQ O77407 296 40
GQALTFVDNHDNQ O76263 298 40
GQALTFVDNHDSQ O18408 299 40
DRALVFVDNHDNQ AMYP_PIG 290 42
DRALVFVDNHDNQ AMYS_MOUSE 305 42
GQALTFVDNHDNQ O76264 299 40
LDAVVFVDNHDNQ AMY_TENMO 277 40
GQVLTFVDNHDNQ O77012 300 40
GQALTFVDIHDNQ O77011 300 40
EQAFTFVDNHDNQ O76284 300 40
DRALVFVDNHDNQ Q98942 305 42
GQAFTFVDNHDNQ O18420 300 40
DRALVFVDNHDNQ AMYC_HUMAN 305 42
DRALVFVDNHDNQ AMYP_HUMAN 305 42
DRALVFVDNHDNQ AMYS_HUMAN 305 42
GQALTFVDNHVNQ O18552 300 40
LDAVAFIDNHDNQ Q26855 296 40
LDAVAFIDNHDNQ Q26854 296 40
HDALVFIDNHDNQ Q26193 305 40
HLGLVFVDNHDNQ Q16924 293 40
SQALVFVDNHDNQ AMY1_AEDAE 542 43
SQALVFVDNHDNQ O02413 542 43
HLGLAFVDNHDNQ O02652 293 40
NDVVVFIDNHDNQ P91778 303 40
SSAVVFVDNHDNQ AMY_ALTHA 278 39
HDVLNFIDNHDNQ P91982 316 42
SDAVTFVTNHDEE Q52413 270 39
RDAFVFVDNHDNQ Q17059 308 41
TTAGVFVDNHDTE Q53633 287 39
GQSGVFVDNHDTE AMY_STRVL 286 39
GKSAVFVDNHDTE AMY_STRGR 286 39
GKSAVFVDNHDTE AMY_STRLM 286 39
RQARTFVDNWDTE AMY_STRHY 282 37
SVAGVFVDNHDTD O65947 281 39
ASARTFVDNWDTE Q59964 286 37
TTAGVFVDNHDTE AMY_STRTL 287 39
DEAAVFVTNHDTE P97179 293 39
DEAAVFVTNHDTE O86876 293 39
SKAIAFVDNHDKQ Q52516 301 44
NKAFVFVDNHDPE AMYA_AERHY 278 40
NRAVTFAVTHDIP Q56791 318 47
AKAVTFVDNHDTG Q03651 303 60
AKAVTFVDNHDTG AMY2_HORVU 303 60
NRAVTFAITHDIP AMY1_AERHY 304 47
AKAVTFVDNHDTG Q40015 303 60
EKAVTFVDNHDTG AM3D_ORYSA 301 58
AKAVTFVDNHDTG O81699 304 61
AKAVTFVDNHDNG Q40016 305 60
AKAVTFVDNHDTG AMY6_HORVU 305 60
AKATTFVDNHDTG AMY1_ORYSA 304 61
AKAVTFVDNHDTG Q42504 304 61
AKAATFVDNHDTG AMY1_HORVU 305 61
AKAVTFVDNHDTG O04965 304 61
AKAATFVDNHDTG Q40017 305 61
ARAITFTITHDIP Q52414 306 47
AKAVTFVDNHDTG AM2A_ORYSA 304 61
AKAVTFVDNHDTG AMC2_ORYSA 304 61
AKAVTFIDNHDTG O04964 304 61
User query: Display/Full Code "ALPHAAMYLASE"