| HPVCAPSIDL1: | Papillomavirus major capsid protein L1 signature |
| Seed alignment containing 18 sequences: |
1 11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291 301 311 321 331 341 351 361 371 381 391 401 411 421 431 441 451 461 471 481 491 501 511 521 531 541 551 561
|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|-
HPU372171 -------------------------------MSLWLPSEATVYLPP-VPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKP---NNNKILVPKVSGLQYRVFRIYLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAG---VDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCNNVAVTPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAG------AVGENVPDDLYIKGS---GPTA-----NLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAIST--SEPTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTS-QAIACQKHTPPAPKED-PLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGFKAKPKFTLGKRKATPTTSSTSTTAKRKKRKL-
HPU22461 -------------------------------MALWRSSDNTVYLPP-PSVAKVVNTDDYVTRTGIYYYAGTSRLLTVGHPYFKVPVN---GGRKQEIPKVSAYQYRVFRVSLPDPNKFGLPDPSLYNPDTQRLVWACIGVEIGRGQPLGVGVSGHPLYNRLDDTENSHFSSAVSTQ---DSRDNVSVDYKQTQLCIIGCVPAMGEHWAKGKACKSTTVQQGDCPPLELVNTAIEDGDMIDTGYGAMDFRTLQETKSEVPLDICQSVCKYPDYLQMSADVYGDSMFFCLRKEQLFARHFWNRGG------MVGDTIPSELYIKGTD---IRE-----RPGTHVYSPSPSGSMVSSDSQLFNKPYWLHKAQGHNNGICWHNQLFITVVDTTRSTNFTLSACTET-AIPAVYSPTKFKEYTRHVEEYDLQFIFQLCTITLTADVMAYIHTMNPAILDNWNIGVTPPPSASLVDTYRYLQS-AAIACQKDAPTPEKKD-PYDDLKFWNVDLKEKFSTELDQFPLGRKFLLQVGARRRPTIGPRKRPASAKSSSSASKHKRKRVSK-
HPU34193 ----------------------------------------TVYLPP-VPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKP---NNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAG---VDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAG------AVGENVPDDLYIKGS---GSTA-----NLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAIST--SETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTS-QAIACQKHTPPAPKED-PLKQYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKR---
VL1_HPV1A -------------------------MYNVFQMAVWLPAQNKFYLPP-QPITRILSTDEYVTRTNLFYHATSERLLLVGHPLFEIS-----SNQTVTIPKVSPNAFRVFRVRFADPNRFAFGDKAIFNPETERLVWGLRGIEIGRGQPLGIGITGHPLLNKLDDAENPTNYINTHANG--DSRQNTAFDAKQTQMFLVGCTPASGEHWTSSR-CPGEQVKLGDCPRVQMIESVIEDGDMMDIGFGAMDFAALQQDKSDVPLDVVQATCKYPDYIRMNHEAYGNSMFFFARREQMYTRHFFTRGG----SVGDKEAVPQSLYLTADAE--PRT-----TLATTNYVGTPSGSMVSSDVQLFNRSYWLQRCQGQNNGICWRNQLFITVGDNTRGTSLSISMKNNAS---TTYSNANFNDFLRHTEEFDLSFIVQLCKVKLTPENLAYIHTMDPNILEDWQLSVSQPPTNPLEDQYRFLGSSLAAKCPEQAPPEPQ-TDPYSQYKFWEVDLTERMSEQLDQFPLGRKFLYQSGMTQRTATSSTTKRKTVR-VSTSAKRRRKA----
VL1_HPV63 -------------------------------MAVWLPAQNKFYLPT-QPITKILSSDDYVSRTNIFYHATSDRLLIVGHPLYEVTR-A--NDNTMTVPKVSPNQYRVFRVRFPDPNRFAFGDKDIFDPETERLVWGLRGIEIGRGQPLGVGISGNPLLNRFDDAENPSRYNNTHATG--DNRQNVAFDAKQTQMFLIGCTPATGEHWSIARRCAGTQFQLGDCPPIELVNTVIEDGDMFDIGLGAMDFGSLQANKADAPLDIAGTVCKYPDYIKMGQEVHGNSLFFFARREQMYLRHVFTHAG----IVSEKEKVPTSAYIAAKAEQ-PQN-----TIATDNYFVAPSGSLVSSDVQIFNRPYWLQRSQGQNNGICWRNELFVTVADNTRGTTMNINVLNKATP--ETYDSADYNEYTRHVEEYELSFIVQLCKVKLTPENLAFLHNMDPTIIDSWQLTVSQPPANAIEDKYRFIES-LATKCPDNVPPPTP-TDPYKDLRFWDVDLSERMSEQLDQFPLGRKFLYQSGLAQRSVPKTVNFRKRRSSNTTVAKRRRRA----
VL1_CRPVK -------------------------------MAVWLSTQNKFYLPP-QPVTKIPSTDEYVTRTNVFYYASSDRLLTVGHPYYEIRDKG-----TMLVPKVSPNQYRVFRIKLPDPNKFAFGDKQLYDPEKERLVWCLRGIEVNRGQPLGVSVTGNPIFNKFDDVENPTKYYNNHADQQ-DYRKSMAFDPKQVQLLMLGCVPATGEHWAQAKQCAEDPPQQTDCPPIELVNTVIEDGDMCEIGFGAMDHKTLQASLSEVPLELAQSISKYPDYLKMQKDQFGDSMFFYARREQMYARHFFSRAGGDKENVKSRAYIKRTQMQGEANA----------NIATDNYCITPSGSLVSSDSQVFNRAYWLQKAQGMNNGVCWDNQIFVTVVDNTRGTILSLVTKSKEQIKKTHGKTVHFSSYLRHVEEYELQFVLQLCKVKLTPENLSYLHSMHPTIIDNWQLSVSAQPSGTLEDQYRYLQS-IATKCPPPEPPKEN-TDPYKNYKFWEVDLSEKLSDQLDQYPLGRKFLNQSGLQRIG-TKRPAPAPVSIVKSSKRKRRT------
HPVT73ELG5 ---------------------------------MWRPTDAKVYLPP-VSVSKVVSTDEYVTRTNIYYYAGSTRLLAVGHPYFPIKDS---QKRKTIVPKVSGLQYRVFRLRLPDPNKFGFPDASFYNPDKERLVWACSGVEVGRGQPLGIGTSGNPFMNKLDDTENAPKYIAGQN---TDGRECMSVDYKQTQLCILGCRPPLGEHWGPGTPCTSQTVNTGDCPPLELKNTPIQDGDMIDVGFGAMDFKALQANKSDVPIDISNTTCKYPDYLGMAADPYGDSMWFYLRREQMFVRHLFNRAG------DTGDKIPDDLMIKGT---GNTA-----TPSSCVFYPTPSGSMVSSDAQLFNKPYWLQKAQGQNNGICWHNQLFLTVVDTTRSTNFSVCVGTQASSSTTTYANSNFKEYLRHAEEFDLQFVFQLCKISLTTEVMTYIHSMNSTILEEWNFGLTPPPSGTLEETYRYVTS-QAISCQRPQPPKETED-PYAKLSFWDVDLKEKFSAELDQFPLGRKFLLQLGMRARPKLQASKRSASATTSATP--KKKRAKRI-
VL1_HPV52 -----MVQILFYILVIFYYVAGVNVFHIFLQMSVWRPSEATVYLPP-VPVSKVVSTDEYVSRTSIYYYAGSSRLLTVGHPYFSIKNTSSGNGKKVLVPKVSGLQYRVFRIKLPDPNKFGFPDTSFYNPETQRLVWACTGLEIGRGQPLGVGISGHPLLNKFDDTETSNKYAGKPG---IDNRECLSMDYKQTQLCILGCKPPIGEHWGKGTPCNNNSGNPGDCPPLQLINSVIQDGDMVDTGFGCMDFNTLQASKSDVPIDICSSVCKYPDYLQMASEPYGDSLFFFLRREQMFVRHFFNRAG------TLGDPVPGDLYIQGSN-SGNTA-----TVQSSAFFPTPSGSMVTSESQLFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMTLCAEVK---KESTYKNENFKEYLRHGEEFDLQFIFQLCKITLTADVMTYIHKMDATILEDWQFGLTPPPSASLEDTYRFVTS-TAITCQKNTPPKGKED-PLKDYMFWEVDLKEKFSADLDQFPLGRKFLLQAGLQARPKLKR-----PASSAPRTSTKKKKVKR--
PPH35CG7 -------------------------------MSLWRSNEATVYLPP-VSVSKVVSTDEYVTRTNIYYHAGSSRLLAVGHPYYAIKKQ---DSNKIAVPKVSGLQYRVFRVKLPDPNKFGFPDTSFYDPCLQRLVWACTGVEVGRGQPLGVGISGHPLLNKLDDTENLNKYVGNSGNSGTDNRECISMDYKQTQLCLIGCRPPIGEHWGKGTPCNANQVKAGECPPLELLNTVLQDGDMVDTGFGAMDFTTLQANKSDVPLDICSSICKYPDYLKMVSEPYGDMLFFYLRREQMFVRHLFNRAG------TVGETVPADLYIKG-----TTG-----TLPSTSYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWSNQLFVTVVDTTRSTNMSVCSAVSS--SDSTYKNDNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNPSILEDWNFGLTPPPSGTLEDTYRYVTS-QAVTCQKPSAPKPKDD-PLKNYTFWEVDLKEKFSADLDQFPLGRKFLLQAGLKARPNFRLGRRAAPASTSKKSSTKRRKVKS--
VL1_HPV30 ------------------------MFPIFLQMAVWRPSETKVYLPP-TPVSKVVPTDAYVKRTNIFYHAGSSRLLAVGHPYYSISKA---GNSKTDVPKVSAFQYRVFRVRLPDPNKFGLPDTNVFNPEQERLVWACVGLEIGRGQPLGVGVSGNPLFNKLDDTESSTIANQDTAE---DSRDNISVDPKQTQLCIIGCTPAIGEHWAKGTACRSAPPAQGDCPPLELVNSPIQDGDMVDIGFGAMDFKTLQESKSDVPLDISQSTCKYPDYLKMSADAYGDSMWFYLRREQLFARHYFNRAG------AIGEQLPSTLYIKGTN---NRD-----PPPSSVYVATPSGSMVTSEAQLFNKPYWLQRAQGHNNGICWGNQVFVTVVDTTRNTNMTISATTQT-LS--TYNSSQIKQYVRHVEEYELQFVFQLCKISLSAETMAYLHTMNSTLLEGWNIGLSPPAATSLEDKYRYVKS-LAITCQKDQPPAEKED-PLAKYKFWDVNLQDSFSADLDQFPLGRKFLMQLGVRTKPSTTTKKRSAPS-SSTSTPSAKRKRR---
VL1_HPV16 -----MQVTFIYILVITCYENDVNVYHIFFQMSLWLPSEATVYLPP-VPVSKVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKP---NNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAG---VDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTNVAVNPGDCPPLELINTVIQDGDMVHTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAG------TVGENVPDDLYIKGS---GSTA-----NLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAIST--SETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVT--QAIACQKHTPPAPKEDDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQAGLKAKPKFTLGKRKATPTTSSTSTTAKRKKRKL-
VL1_HPV04 -------------------------------MSSWLSTTGKVYLPPAQPVARVLETDEYITGTSLYFHAGTERLLTVGHPYFPVKDVQ--EPHKVLVPKVSGSQFRVFRFNLPDPNRFALIDNGFYDSDHERLVWKLRGIEIGRGGPLGIGTTGHPLYNKFGDTENPNGYKKQSD----DNRQDVSLDPKQTQMFIIGCTPAIGEHWDKAEPCPSPAPQQGDCPPIELVNSYIQDGDMCDIGFGAFNFKALQADKSSAPLDVIATVCKWPDFLKMGKDIYGDSLFFFGRREQLYARHFFVRAG------TMGDALPEPFEATSDYFIGAQNQQDQYTLGPHIYVGTPSGSLVSSESQLFNRPYWLNRAQGTNNGICWDNQLFVTLVDNTHNTNFTISVKSDGANDNYQYKASDFKQYLRHIEEFEMEFIFQLCKVPLTADVMAHLNVMNPNILDNWQLNFVPPPPSGIEDQYRFLQS-RATRCPTQTPATEKED-PYKDLSFWVVDLSERFSSELSQFSLGRRFLYQSGLINGSLKRKRIISSSHAQTNTKRSAKRKRSLK-
HPU40822 -------MVLHFIYIHHGILHANAVNVFPCFLQMWRPSDNQVYVPPPAPVSKVISTDAYVTRTNIFYHASSSRLLAVGNPYFPIRQS-----NKTVVPKVSGYQFRVFKVVLPDPNKFALPDTSIFDPSSQRLVWACTGLEVGRGQPLGIGISGHPLLNKLDDVENSASYAANPG---QDNRVNVAMDYKQTQLCMVGCAPPLGEHWGKGKQCSNVNVKPGDCPALELITSVIQDGDMVDTGFGAMNFADLQPIKSDVPLDICNTTCKYPDYLQMAADPYGDRLFFYLRKEQMFARHFFNRAG------TVGEDIPQDLYIKGTTR----S-----TLANAIYFNTPSGSLVSSETQLFNKPFWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMTVCAPTSQS-PSATYNSSDYKQYMRHVEEFDLQFIFQLCSIKLTAEVMAYIHTMNPTVLEEWNFGLTPPPNGTLEDTYRYVQS-QAITCQKPTPDKAKPN-PYANLSFWEVNLKEKFSSELDQYPLGRKFLLQTGVQARSSVRVSKKRSAPTAPSSATKQKRSRKR--
PAVCGS6 -------------------------------MAVWLPAQNKFYLPP-QPSTKVLSTDEYVSRTNIFYHASSERLLTVGHPFYEIYKEE--RSEEVIVPKVSPNQYRVFRLLLPDPNNFAFGDKSLFDPEKERLVWGLRGLEIGRGQPLGISVTGHPTFDRYNDVENPNKNLAGHGGGT-DSRVNMGLDPKQTQMFMIGCKPALGEHWSLTRWCTGQVHTAGQCPPIELRNTTIEDGDMVDIGFGAMDFKALQHYKSGVPIDIVNSACKYPDYLKMANEPYGDRCFFFVRREQLYARHIMSRSG-----TQGLEPVPKDTYATREDN----------NIGTTNYFSTPSGSLVSSEGQLFNRPYWIQRSQGKNNGIAWGNQLFLTVVDNTRGTPLTINIGQQDKPEEGNYVPSSYRTYLRHVEEYEVSIIVQLCKVKLSPENLAIIHTMDPNIIEDWHLNVTP-PSGTLDDTYRYINS-LATKCPTNIPPKTN-VDPFADFKFWEVDLKDKMTEQLDQTPLGRKFLFQTNVLRPRSVKVRSTSHVSVKRKAVKRKRK------
VL1_HPV13 ---------------------------------MWRPSDNKLYVPPPAPVSKVITTDAYVTRTNIFYHASSSRLLAVGNPYFPIKKQ-----NKTVVPKVSGYQFRVFKVVLPDPNKFALPDTSIFDSTSQRLVWACTGLEVGRGQPLGVGISGHPLLNKYDDVENSASYAANPG---QDNRVNVAMDYKQTQLCLVGCAPPLGEHWGQGKQCTGVNVQPGDCPPLELISSVIQDGDMVDTGFGAMNFAELQSNKSDVPLDICTSTCKYPDYLQMAADPYGDRLFFYLRKEQMFARHFFNRAG------SVGEQIPAELYVKGSN-----------TLSNSIYYNTPSGSLVSSEAQLFNKPYWLQKAQGHNNGICWGNHLFVTVVDTTRSTNMTVCAATTSS-LSDTYKATEYKQYMRHVEEFDLQFIFQLCTIKLTAEVMSYIHTMNPTILEDWNFGLSPPPNGTLEDTYRYVQS-QAITCQKPTPDKEKQD-PYAGLSFWEVNLKEKFSSELDQYPLGRKFLLQTGVQSRSPIRVGRKRAASTSTATPTTRKKAKRK--
VL1_HPV35 -------------------------------MSLWRSNEATVYLPP-VSVSKVVSTDEYVTRTNIYYHAGSSRLLAVGHPYYAIKKQ---DSNKIAVPKVSGLQYRVFRVKLPDPNKFGFPDTSFYDPASQRLVWACTGVEVGRGQPLGVGISGHPLLNKLDDTENSNKYVGNSG---TDNRECISMDYKQTQLCLIGCRPPIGEHWGKGTPCNANQVKAGECPPLELLNTVLQDGDMVDTGFGAMDFTTLQANKSDVPLDICSSICKYPDYLKMVSEPYGDMLFFYLRREQMFVRHLFNRAG------TVGETVPADLYIKG-----TTG-----TLPSTSYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWSNQLFVTVVDTTRSTNMSVCSAVSS--SDSTYKNDNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNPSILEDWNFGLTPPPSGTLEDTYRYVTS-QAVTCQKPSAPKPKDD-PLKNYTFWEVDLKEKFSADLDQFPLGRKFLLQAGLKARPNFRLGKRAAPASTSKKSSTKRRKVKS--
MRU018345 MSYIGAIMGRTIIYTRHCPDAGVTAGISIFQMAYWLPNNQKLYLPP-APVQRILSTDEFTTRTDIYYYASSDRLLTVGNPYYPILDG-----DTVTVPKVSPNQYRVFRCKLPDPNRFAFGEKSVYDPEKQRLAWCIRGVEIARGQPLGIGITGHPLYNRLEDVENPGK--YPSAPGT-DNRQNVGLDPKQTQMFIVGCVPAQGEHWSRALTCSNQVVKKGDCPPIQRMSGMIEDGDMGDIGYGNLDFRVLQENKSEVPLEVVDSICKYPDYLGMSKETHGNSCFFYARQARLYSRHFFNRAG------VQGETVPESLYKKGKDGQ-AQS-----TLALATYSGTPSGSLVSSDAVLFNRPYWLERAQGQNNGILWNNDLFVTVLDNTRGTHFSISIATQDE---NDYTASNYKQYTRHVEEFELEFIFQLVKINLSTEVLAYLHGMDPSILDNWNLTLGPPNDGSLADKYRFIES-LATKCPDNVEVTK--PDPYKGRIFWNIDLTERLTADLDQFSLGRKFLYQHARISNRKRSLPASRNGGGTSSSSTKRRKK-----
VL1_HPV65 -------------------------------MASWLSAKGKVYLPPAQPVARVLETDEYITGTSLYFHAGTERLLTVGHPYFPVKDVQ--DQHKVLVPKVSGSQYRVFRFYLPDPNRFALIDNGFYDSDHERLVWRLRGIEIGRGGPLGIGTTGHPLYNKFGDSENPNGYRKQSD----DNRQDVSLDPKQTQMFIIGCTPAIGEHWDKAEPCASPVPQPGDCPPIELVNTYIEDGDMCDIGFGAFNFKALQQDKSSAPLDVVATMCKWPDFLKMSKDVYGDSLFFYGRREQLYARHFFVRAG------AMGDALPEPFEVKTDYWIPAQEGQDQNTLGPHIYIGTPSGSLVSSESQLFNRPYWLNRAQGTNNGICWDNQLFVTLVDNTHNTNFTISVKTEAADESYKYKAGDFKQYLRHIEEFEMEFIFQLCTVPLTADVMAHLNVMNPNILDNWQLNFVPPPPSGIEDQYRFIQS-RATRCPTQSPSTEKED-PYKDLSFWGVDLTERFSSELSQFSLGRRFLYQSGLINGTLKRKRTIN-SQAPTSIKRSAKRKRSIKQ